DEAD-box ATP-dependent RNA helicase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18600 |
| fragaria_vesca | FvH4_5g12870 |
| malus_domestica | MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1 |
| prunus_persica | Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1 |
| pyrus_communis | pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320 |
| rosa_chinensis | RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361 |
| rosa_laevigata | RLG00000004982 RLG00000037030 |
| rosa_multiflora | Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045 |
| rosa_roxburghii | Rroxscaffold_1G00001130 Rroxscaffold_3G00269690 |
| rosa_samantha | Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500 |
| rosa_wichuraiana | Rw5G049900 Rw7G005460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 685 |
| AccIII | TCCGGA | 2 cut(s) | 28, 1647 |
| AciI | CCGC | 2 cut(s) | 1484, 1574 |
| AclWI | GGATC | 4 cut(s) | 426, 439, 1247, 1259 |
| AcsI | RAATTY | 4 cut(s) | 307, 1067, 1615, 1731 |
| AcuI | CTGAAG | 1 cut(s) | 599 |
| AfaI | GTAC | 2 cut(s) | 584, 1195 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 112, 503, 535, 825, 945 |
| AgsI | TTSAA | 9 cut(s) | 307, 328, 371, 736, 892, 1375, 1397, 1599, 1621 |
| AjiI | CACGTC | 1 cut(s) | 1237 |
| AjnI | CCWGG | 2 cut(s) | 679, 1215 |
| AluBI | AGCT | 9 cut(s) | 419, 464, 623, 758, 811, 836, 1301, 1423, 1583 |
| AluI | AGCT | 9 cut(s) | 419, 464, 623, 758, 811, 836, 1301, 1423, 1583 |
| Alw26I | GTCTC | 4 cut(s) | 32, 282, 1443, 1565 |
| AlwI | GGATC | 4 cut(s) | 426, 439, 1247, 1259 |
| Ama87I | CYCGRG | 1 cut(s) | 1302 |
| Aor13HI | TCCGGA | 2 cut(s) | 28, 1647 |
| AoxI | GGCC | 4 cut(s) | 114, 207, 330, 1213 |
| ApeKI | GCWGC | 5 cut(s) | 419, 620, 1132, 1205, 1580 |
| ApoI | RAATTY | 4 cut(s) | 307, 1067, 1615, 1731 |
| AseI | ATTAAT | 1 cut(s) | 1410 |
| AspLEI | GCGC | 1 cut(s) | 1479 |
| AspS9I | GGNCC | 2 cut(s) | 115, 571 |
| AsuC2I | CCSGG | 1 cut(s) | 436 |
| AsuHPI | GGTGA | 5 cut(s) | 161, 644, 928, 1547, 1624 |
| AvaI | CYCGRG | 1 cut(s) | 1302 |
| AvaII | GGWCC | 1 cut(s) | 571 |
| BamHI | GGATCC | 1 cut(s) | 431 |
| BauI | CACGAG | 1 cut(s) | 1209 |
| BbsI | GAAGAC | 5 cut(s) | 53, 182, 446, 1033, 1595 |
| BbvI | GCAGC | 5 cut(s) | 406, 632, 1144, 1192, 1592 |
| BccI | CCATC | 5 cut(s) | 394, 705, 911, 1030, 1447 |
| BceAI | ACGGC | 1 cut(s) | 545 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1346, 1380 |
| BciT130I | CCWGG | 2 cut(s) | 681, 1217 |
| BcnI | CCSGG | 1 cut(s) | 436 |
| BcoDI | GTCTC | 4 cut(s) | 32, 282, 1443, 1565 |
| BfaI | CTAG | 4 cut(s) | 423, 624, 879, 975 |
| BfmI | CTRYAG | 1 cut(s) | 1568 |
| BisI | GCNGC | 6 cut(s) | 420, 621, 1133, 1206, 1485, 1581 |
| BlsI | GCNGC | 6 cut(s) | 421, 622, 1134, 1207, 1486, 1582 |
| Bme1390I | CCNGG | 3 cut(s) | 436, 681, 1217 |
| Bme18I | GGWCC | 1 cut(s) | 571 |
| BmeT110I | CYCGRG | 1 cut(s) | 1302 |
| BmgBI | CACGTC | 1 cut(s) | 1237 |
| BmgT120I | GGNCC | 2 cut(s) | 115, 571 |
| BmiI | GGNNCC | 1 cut(s) | 433 |
| BmrFI | CCNGG | 3 cut(s) | 436, 681, 1217 |
| BmsI | GCATC | 4 cut(s) | 32, 1344, 1646, 1647 |
| BpiI | GAAGAC | 5 cut(s) | 53, 182, 446, 1033, 1595 |
| BpmI | CTGGAG | 2 cut(s) | 686, 1242 |
| BpuMI | CCSGG | 1 cut(s) | 436 |
| BsaJI | CCNNGG | 7 cut(s) | 412, 561, 679, 711, 1117, 1269, 1608 |
| BsaWI | WCCGGW | 2 cut(s) | 28, 1647 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 112, 503, 535, 825, 945 |
| Bse1I | ACTGG | 1 cut(s) | 1449 |
| BseAI | TCCGGA | 2 cut(s) | 28, 1647 |
| BseBI | CCWGG | 2 cut(s) | 681, 1217 |
| BseDI | CCNNGG | 7 cut(s) | 412, 561, 679, 711, 1117, 1269, 1608 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 112, 503, 535, 825, 945 |
| BseMII | CTCAG | 2 cut(s) | 377, 1074 |
| BseNI | ACTGG | 1 cut(s) | 1449 |
| BseRI | GAGGAG | 6 cut(s) | 149, 242, 245, 486, 995, 1153 |
| BseXI | GCAGC | 5 cut(s) | 406, 632, 1144, 1192, 1592 |
| BsgI | GTGCAG | 3 cut(s) | 639, 1265, 1454 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1578 |
| BshFI | GGCC | 4 cut(s) | 116, 209, 332, 1215 |
| BsiEI | CGRYCG | 1 cut(s) | 1578 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1302 |
| BsiSI | CCGG | 3 cut(s) | 29, 435, 1648 |
| BslFI | GGGAC | 1 cut(s) | 1373 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 112, 503, 535, 825, 945 |
| BsmAI | GTCTC | 4 cut(s) | 32, 282, 1443, 1565 |
| BsmBI | CGTCTC | 2 cut(s) | 32, 1565 |
| BsmFI | GGGAC | 1 cut(s) | 1373 |
| BsmI | GAATGC | 1 cut(s) | 1716 |
| BsnI | GGCC | 4 cut(s) | 116, 209, 332, 1215 |
| BsoBI | CYCGRG | 1 cut(s) | 1302 |
| Bsp13I | TCCGGA | 2 cut(s) | 28, 1647 |
| Bsp143I | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| Bsp19I | CCATGG | 1 cut(s) | 1117 |
| BspACI | CCGC | 2 cut(s) | 1484, 1574 |
| BspANI | GGCC | 4 cut(s) | 116, 209, 332, 1215 |
| BspCNI | CTCAG | 2 cut(s) | 376, 1073 |
| BspEI | TCCGGA | 2 cut(s) | 28, 1647 |
| BspLI | GGNNCC | 1 cut(s) | 433 |
| BspMAI | CTGCAG | 1 cut(s) | 1572 |
| BspPI | GGATC | 4 cut(s) | 426, 439, 1247, 1259 |
| BspQI | GCTCTTC | 1 cut(s) | 1392 |
| BsrI | ACTGG | 1 cut(s) | 1449 |
| BssECI | CCNNGG | 7 cut(s) | 412, 561, 679, 711, 1117, 1269, 1608 |
| BssMI | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| BssSI | CACGAG | 1 cut(s) | 1209 |
| BssT1I | CCWWGG | 4 cut(s) | 711, 1117, 1269, 1608 |
| Bst2BI | CACGAG | 1 cut(s) | 1209 |
| Bst2UI | CCWGG | 2 cut(s) | 681, 1217 |
| Bst4CI | ACNGT | 3 cut(s) | 81, 598, 1559 |
| Bst6I | CTCTTC | 4 cut(s) | 126, 1054, 1344, 1392 |
| BstC8I | GCNNGC | 1 cut(s) | 1572 |
| BstDEI | CTNAG | 5 cut(s) | 363, 930, 1026, 1060, 1085 |
| BstDSI | CCRYGG | 2 cut(s) | 561, 1117 |
| BstEII | GGTNACC | 1 cut(s) | 934 |
| BstHHI | GCGC | 1 cut(s) | 1479 |
| BstKTI | GATC | 6 cut(s) | 399, 434, 874, 1255, 1267, 1567 |
| BstMAI | GTCTC | 4 cut(s) | 32, 282, 1443, 1565 |
| BstMBI | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| BstMCI | CGRYCG | 1 cut(s) | 1578 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1132, 1493, 1580 |
| BstNI | CCWGG | 2 cut(s) | 681, 1217 |
| BstPI | GGTNACC | 1 cut(s) | 934 |
| BstSCI | CCNGG | 3 cut(s) | 434, 679, 1215 |
| BstSFI | CTRYAG | 1 cut(s) | 1568 |
| BstV1I | GCAGC | 5 cut(s) | 406, 632, 1144, 1192, 1592 |
| BstV2I | GAAGAC | 5 cut(s) | 53, 182, 446, 1033, 1595 |
| BstX2I | RGATCY | 1 cut(s) | 431 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1289 |
| BstYI | RGATCY | 1 cut(s) | 431 |
| BsuRI | GGCC | 4 cut(s) | 116, 209, 332, 1215 |
| BtgI | CCRYGG | 2 cut(s) | 561, 1117 |
| BtrI | CACGTC | 1 cut(s) | 1237 |
| BtsI | GCAGTG | 1 cut(s) | 1639 |
| BtsIMutI | CAGTG | 1 cut(s) | 1639 |
| Cac8I | GCNNGC | 1 cut(s) | 1572 |
| CfoI | GCGC | 1 cut(s) | 1479 |
| Cfr13I | GGNCC | 2 cut(s) | 115, 571 |
| CseI | GACGC | 1 cut(s) | 61 |
| Csp6I | GTAC | 2 cut(s) | 583, 1194 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 244, 279 |
| CviAII | CATG | 1 cut(s) | 1118 |
| CviQI | GTAC | 2 cut(s) | 583, 1194 |
| DdeI | CTNAG | 5 cut(s) | 363, 930, 1026, 1060, 1085 |
| DpnI | GATC | 6 cut(s) | 398, 433, 873, 1254, 1266, 1566 |
| DpnII | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| Eam1104I | CTCTTC | 4 cut(s) | 126, 1054, 1344, 1392 |
| EarI | CTCTTC | 4 cut(s) | 126, 1054, 1344, 1392 |
| Eco130I | CCWWGG | 4 cut(s) | 711, 1117, 1269, 1608 |
| Eco32I | GATATC | 1 cut(s) | 1114 |
| Eco47I | GGWCC | 1 cut(s) | 571 |
| Eco57I | CTGAAG | 1 cut(s) | 599 |
| Eco88I | CYCGRG | 1 cut(s) | 1302 |
| Eco91I | GGTNACC | 1 cut(s) | 934 |
| EcoO109I | RGGNCCY | 1 cut(s) | 571 |
| EcoO65I | GGTNACC | 1 cut(s) | 934 |
| EcoRII | CCWGG | 2 cut(s) | 679, 1215 |
| EcoRV | GATATC | 1 cut(s) | 1114 |
| EcoT14I | CCWWGG | 4 cut(s) | 711, 1117, 1269, 1608 |
| ErhI | CCWWGG | 4 cut(s) | 711, 1117, 1269, 1608 |
| Esp3I | CGTCTC | 2 cut(s) | 32, 1565 |
| FaeI | CATG | 1 cut(s) | 1121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1529, 1561 |
| FaqI | GGGAC | 1 cut(s) | 1373 |
| FatI | CATG | 1 cut(s) | 1117 |
| FblI | GTMKAC | 1 cut(s) | 685 |
| Fnu4HI | GCNGC | 6 cut(s) | 420, 621, 1133, 1206, 1485, 1581 |
| Fsp4HI | GCNGC | 6 cut(s) | 420, 621, 1133, 1206, 1485, 1581 |
| FspBI | CTAG | 4 cut(s) | 423, 624, 879, 975 |
| GlaI | GCGC | 1 cut(s) | 1478 |
| GluI | GCNGC | 6 cut(s) | 420, 621, 1133, 1206, 1485, 1581 |
| GsuI | CTGGAG | 2 cut(s) | 686, 1242 |
| HaeIII | GGCC | 4 cut(s) | 116, 209, 332, 1215 |
| HapII | CCGG | 3 cut(s) | 29, 435, 1648 |
| HgaI | GACGC | 1 cut(s) | 61 |
| HhaI | GCGC | 1 cut(s) | 1479 |
| Hin1II | CATG | 1 cut(s) | 1121 |
| Hin6I | GCGC | 1 cut(s) | 1477 |
| HinP1I | GCGC | 1 cut(s) | 1477 |
| HincII | GTYRAC | 2 cut(s) | 601, 686 |
| HindII | GTYRAC | 2 cut(s) | 601, 686 |
| HindIII | AAGCTT | 1 cut(s) | 809 |
| HinfI | GANTC | 9 cut(s) | 89, 290, 361, 367, 442, 717, 1018, 1182, 1686 |
| HpaII | CCGG | 3 cut(s) | 29, 435, 1648 |
| HphI | GGTGA | 5 cut(s) | 161, 644, 928, 1547, 1624 |
| Hpy166II | GTNNAC | 6 cut(s) | 492, 601, 686, 868, 1234, 1555 |
| Hpy188I | TCNGA | 8 cut(s) | 85, 94, 366, 401, 416, 552, 579, 1078 |
| Hpy188III | TCNNGA | 8 cut(s) | 29, 338, 692, 703, 869, 1259, 1562, 1648 |
| Hpy8I | GTNNAC | 6 cut(s) | 492, 601, 686, 868, 1234, 1555 |
| Hpy99I | CGWCG | 3 cut(s) | 38, 55, 85 |
| HpyCH4III | ACNGT | 3 cut(s) | 81, 598, 1559 |
| HpyCH4IV | ACGT | 3 cut(s) | 643, 1092, 1236 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1132, 1493, 1580 |
| HpyF3I | CTNAG | 5 cut(s) | 363, 930, 1026, 1060, 1085 |
| HpySE526I | ACGT | 3 cut(s) | 643, 1092, 1236 |
| Hsp92II | CATG | 1 cut(s) | 1121 |
| HspAI | GCGC | 1 cut(s) | 1477 |
| Kpn2I | TCCGGA | 2 cut(s) | 28, 1647 |
| Kzo9I | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| LguI | GCTCTTC | 1 cut(s) | 1392 |
| LmnI | GCTCC | 1 cut(s) | 416 |
| Lsp1109I | GCAGC | 5 cut(s) | 406, 632, 1144, 1192, 1592 |
| LweI | GCATC | 4 cut(s) | 32, 1344, 1646, 1647 |
| MaeI | CTAG | 4 cut(s) | 423, 624, 879, 975 |
| MaeII | ACGT | 3 cut(s) | 643, 1092, 1236 |
| MaeIII | GTNAC | 3 cut(s) | 17, 934, 1055 |
| MalI | GATC | 6 cut(s) | 398, 433, 873, 1254, 1266, 1566 |
| MboI | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| MflI | RGATCY | 1 cut(s) | 431 |
| MlyI | GAGTC | 3 cut(s) | 284, 355, 436 |
| MmeI | TCCRAC | 1 cut(s) | 63 |
| MroI | TCCGGA | 2 cut(s) | 28, 1647 |
| MseI | TTAA | 6 cut(s) | 807, 1095, 1410, 1548, 1625, 1753 |
| MspI | CCGG | 3 cut(s) | 29, 435, 1648 |
| MspR9I | CCNGG | 3 cut(s) | 436, 681, 1217 |
| Mva1269I | GAATGC | 1 cut(s) | 1716 |
| MvaI | CCWGG | 2 cut(s) | 681, 1217 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1132, 1493, 1580 |
| NciI | CCSGG | 1 cut(s) | 436 |
| NcoI | CCATGG | 1 cut(s) | 1117 |
| NdeII | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| NlaIII | CATG | 1 cut(s) | 1121 |
| NlaIV | GGNNCC | 1 cut(s) | 433 |
| NmuCI | GTSAC | 1 cut(s) | 934 |
| PaeR7I | CTCGAG | 1 cut(s) | 1302 |
| PciSI | GCTCTTC | 1 cut(s) | 1392 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 47, 1300 |
| PctI | GAATGC | 1 cut(s) | 1716 |
| PfeI | GAWTC | 6 cut(s) | 89, 367, 717, 1018, 1182, 1686 |
| PfoI | TCCNGGA | 1 cut(s) | 434 |
| PkrI | GCNGC | 6 cut(s) | 421, 622, 1134, 1207, 1486, 1582 |
| PleI | GAGTC | 3 cut(s) | 284, 355, 436 |
| PpsI | GAGTC | 3 cut(s) | 284, 355, 436 |
| PpuMI | RGGWCCY | 1 cut(s) | 571 |
| PshBI | ATTAAT | 1 cut(s) | 1410 |
| Psp5II | RGGWCCY | 1 cut(s) | 571 |
| Psp6I | CCWGG | 2 cut(s) | 679, 1215 |
| PspEI | GGTNACC | 1 cut(s) | 934 |
| PspGI | CCWGG | 2 cut(s) | 679, 1215 |
| PspN4I | GGNNCC | 1 cut(s) | 433 |
| PspPI | GGNCC | 2 cut(s) | 115, 571 |
| PspPPI | RGGWCCY | 1 cut(s) | 571 |
| PspXI | VCTCGAGB | 1 cut(s) | 1302 |
| PstI | CTGCAG | 1 cut(s) | 1572 |
| PsuI | RGATCY | 1 cut(s) | 431 |
| RsaI | GTAC | 2 cut(s) | 584, 1195 |
| RsaNI | GTAC | 2 cut(s) | 583, 1194 |
| SalI | GTCGAC | 1 cut(s) | 684 |
| SapI | GCTCTTC | 1 cut(s) | 1392 |
| SaqAI | TTAA | 6 cut(s) | 807, 1095, 1410, 1548, 1625, 1753 |
| SatI | GCNGC | 6 cut(s) | 420, 621, 1133, 1206, 1485, 1581 |
| Sau3AI | GATC | 6 cut(s) | 396, 431, 871, 1252, 1264, 1564 |
| Sau96I | GGNCC | 2 cut(s) | 115, 571 |
| SchI | GAGTC | 3 cut(s) | 284, 355, 436 |
| ScrFI | CCNGG | 3 cut(s) | 436, 681, 1217 |
| SfaNI | GCATC | 4 cut(s) | 32, 1344, 1646, 1647 |
| SfcI | CTRYAG | 1 cut(s) | 1568 |
| Sfr274I | CTCGAG | 1 cut(s) | 1302 |
| SinI | GGWCC | 1 cut(s) | 571 |
| SlaI | CTCGAG | 1 cut(s) | 1302 |
| SmlI | CTYRAG | 1 cut(s) | 1302 |
| SmoI | CTYRAG | 1 cut(s) | 1302 |
| SsiI | CCGC | 2 cut(s) | 1484, 1574 |
| SspMI | CTAG | 4 cut(s) | 423, 624, 879, 975 |
| StyD4I | CCNGG | 3 cut(s) | 434, 679, 1215 |
| StyI | CCWWGG | 4 cut(s) | 711, 1117, 1269, 1608 |
| TaaI | ACNGT | 3 cut(s) | 81, 598, 1559 |
| TaiI | ACGT | 3 cut(s) | 646, 1095, 1239 |
| TaqI | TCGA | 6 cut(s) | 100, 685, 1294, 1303, 1563, 1735 |
| TaqII | GACCGA | 1 cut(s) | 1011 |
| TatI | WGTACW | 1 cut(s) | 1193 |
| TauI | GCSGC | 1 cut(s) | 1487 |
| TfiI | GAWTC | 6 cut(s) | 89, 367, 717, 1018, 1182, 1686 |
| Tru1I | TTAA | 6 cut(s) | 807, 1095, 1410, 1548, 1625, 1753 |
| Tru9I | TTAA | 6 cut(s) | 807, 1095, 1410, 1548, 1625, 1753 |
| TscAI | CASTG | 1 cut(s) | 1639 |
| TseFI | GTSAC | 1 cut(s) | 934 |
| TseI | GCWGC | 5 cut(s) | 419, 620, 1132, 1205, 1580 |
| Tsp45I | GTSAC | 1 cut(s) | 934 |
| TspDTI | ATGAA | 9 cut(s) | 203, 291, 709, 768, 809, 957, 1550, 1575, 1743 |
| TspGWI | ACGGA | 1 cut(s) | 5 |
| TspRI | CASTG | 1 cut(s) | 1639 |
| VpaK11BI | GGWCC | 1 cut(s) | 571 |
| VspI | ATTAAT | 1 cut(s) | 1410 |
| XapI | RAATTY | 4 cut(s) | 307, 1067, 1615, 1731 |
| XhoI | CTCGAG | 1 cut(s) | 1302 |
| XmiI | GTMKAC | 1 cut(s) | 685 |
| XspI | CTAG | 4 cut(s) | 423, 624, 879, 975 |