Prupe.6G097300_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
6776053 .. 6780670
4618 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G097300.1

Sequence Viewer

Length: 1755 bp
ATGACAGACCCAATCCGTTACGCATCTCCGGACGACGAGACGAAGAAGACGACGCACAAGAGAAAGAGAGGGAATAAACCGTCGGAAGAATCAGAGCCTCGAAACCCTTATCAGGCCCAACAAAACGAAGAAGAGGAGAAAGGAGAAGGTGATGATGACAATAAGAAGGAAAAGAAGACGAAGAAAATGAAGGGAGAGGAAGCAGAGGCCAACGCAGAGGGGGTGGAGGAGGAGAATAAGAGGAAGAAGAAGGTCAAAAGTGGTGGAGGGTCTGGGATTATGAGCAGAGACTCCTTTGGTTCATTGAATTTGTCTGCCAACACTTTCAAGGCCATTCAGGAACTCAACTTTCAGTATATGACTCAGATTCAAGCCAGAGCAATCCCATCACTATTGATCGGAAAAGATGTCCTCGGAGCTGCTAGGACAGGATCCGGGAAGACTCTTGCTTTTCTTATACCAGCTTTGGAGTTGCTATATCACACAAAGTTTACTCCTCGTAATGGAACAGGTGTTGTTGTCATTTGCCCAACACGGGAACTTGCAATTCAGACCTATGCCGTGGCAAAGGACCTTCTGAAGTACCACTCACATACTGTTGACTTGGTTATCGGTGGTGCAGCTAGGAGAGGTGAAGCAGAACGTCTTGTAAAAGGAGTAAATCTATTGGTTGCAACCCCTGGTCGACTTCTTGACCATCTCCAGAATACCAAGGGATTCATATATAAGAACTTGAAGTGCCTCATAATTGATGAAGCTGATAGGATTTTGGAAGCAAACTTTGAGGAAGAAATGAAACAGATTATTAAGCTTCTACCCAAGAAAAGGCAAACAGCTTTATTTTCAGCAACCCAAACTACAAAGGTTCACGATCTTGCTAGATTGTCGTTGAAAGAACATCACTTGATTGATGTTGATGGTGGAAGAACTAAGGTCACCAATGAAGGGCTGAAACAAGGCTATTTTATTGTGCCTAGTGAGGAGAGATTTATTCTCCTATATTCTTTTCTGGTGGCGATTCGGTCTAAGAAAGTGATGGTCTTCTTCTCTTCTTGTAACTCAGTCAAATTCCACTCTGACCTTCTTAGATACGTTAATGTGGATTGCTTTGATATCCATGGAAAGCAAAAGCAGCAGAGGAGGACAAAAACTTTTTTTGACTTCTGCAAAGCAGAGAAAGGAATCTTACTCTGTACTGATGTTGCTGCTCGTGGCCTGGATATTCCTGCTGTGGACGTGATTGTGCAGTTTGATCCTCCAGATGATCCCAAGGAATATATCCACAGAGTTGGTCGAACAGCTCGAGGGGAAGGTGGAAAAGGAAAGGCATTTCTTTTCCTCATACCCGAAGAGATGCAATTTATTCGCTATTTGAAGGCTGAAAAAGTCCCCGTTGAAGAGCAACAAATTAATAAGAATAAGCTGAAAAATGTGCAGTCTCAACTGGAAAAGATGGTTGAGGGCAACTACTATCTGCGCCAAGCGGCAAAAGAAGCATATAAATCTTATCTATTAGCGTATAATTCACACTCTATGAAGGACATCTTTAATGTTCACCGTCTCGATCTGCAGGCGGTCGCAGCTTCATTTTGCTTTTCAAGTCTTCCCAAGGTGAATTTGAACTTAAACAGCAGTGCATCAAAGTTCCGGAAGAAGATGCACAAAGTAGGAGGAAGTAGAAATGGATTCAGCGAGAGCAATCCTTATGGAATGCGAAAAGGTAGAGATGAAATTCGACAATTTGTGAAGCATTAA

Protein Analysis

585

Amino Acids

66.05

Weight (kDa)

9.48

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 685
AccIII TCCGGA 2 cut(s) 28, 1647
AciI CCGC 2 cut(s) 1484, 1574
AclWI GGATC 4 cut(s) 426, 439, 1247, 1259
AcsI RAATTY 4 cut(s) 307, 1067, 1615, 1731
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 2 cut(s) 584, 1195
AfiI CCNNNNNNNGG 5 cut(s) 112, 503, 535, 825, 945
AgsI TTSAA 9 cut(s) 307, 328, 371, 736, 892, 1375, 1397, 1599, 1621
AjiI CACGTC 1 cut(s) 1237
AjnI CCWGG 2 cut(s) 679, 1215
AluBI AGCT 9 cut(s) 419, 464, 623, 758, 811, 836, 1301, 1423, 1583
AluI AGCT 9 cut(s) 419, 464, 623, 758, 811, 836, 1301, 1423, 1583
Alw26I GTCTC 4 cut(s) 32, 282, 1443, 1565
AlwI GGATC 4 cut(s) 426, 439, 1247, 1259
Ama87I CYCGRG 1 cut(s) 1302
Aor13HI TCCGGA 2 cut(s) 28, 1647
AoxI GGCC 4 cut(s) 114, 207, 330, 1213
ApeKI GCWGC 5 cut(s) 419, 620, 1132, 1205, 1580
ApoI RAATTY 4 cut(s) 307, 1067, 1615, 1731
AseI ATTAAT 1 cut(s) 1410
AspLEI GCGC 1 cut(s) 1479
AspS9I GGNCC 2 cut(s) 115, 571
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 5 cut(s) 161, 644, 928, 1547, 1624
AvaI CYCGRG 1 cut(s) 1302
AvaII GGWCC 1 cut(s) 571
BamHI GGATCC 1 cut(s) 431
BauI CACGAG 1 cut(s) 1209
BbsI GAAGAC 5 cut(s) 53, 182, 446, 1033, 1595
BbvI GCAGC 5 cut(s) 406, 632, 1144, 1192, 1592
BccI CCATC 5 cut(s) 394, 705, 911, 1030, 1447
BceAI ACGGC 1 cut(s) 545
BcgI CGANNNNNNTGC 2 cut(s) 1346, 1380
BciT130I CCWGG 2 cut(s) 681, 1217
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 4 cut(s) 32, 282, 1443, 1565
BfaI CTAG 4 cut(s) 423, 624, 879, 975
BfmI CTRYAG 1 cut(s) 1568
BisI GCNGC 6 cut(s) 420, 621, 1133, 1206, 1485, 1581
BlsI GCNGC 6 cut(s) 421, 622, 1134, 1207, 1486, 1582
Bme1390I CCNGG 3 cut(s) 436, 681, 1217
Bme18I GGWCC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 1302
BmgBI CACGTC 1 cut(s) 1237
BmgT120I GGNCC 2 cut(s) 115, 571
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 3 cut(s) 436, 681, 1217
BmsI GCATC 4 cut(s) 32, 1344, 1646, 1647
BpiI GAAGAC 5 cut(s) 53, 182, 446, 1033, 1595
BpmI CTGGAG 2 cut(s) 686, 1242
BpuMI CCSGG 1 cut(s) 436
BsaJI CCNNGG 7 cut(s) 412, 561, 679, 711, 1117, 1269, 1608
BsaWI WCCGGW 2 cut(s) 28, 1647
Bsc4I CCNNNNNNNGG 5 cut(s) 112, 503, 535, 825, 945
Bse1I ACTGG 1 cut(s) 1449
BseAI TCCGGA 2 cut(s) 28, 1647
BseBI CCWGG 2 cut(s) 681, 1217
BseDI CCNNGG 7 cut(s) 412, 561, 679, 711, 1117, 1269, 1608
BseLI CCNNNNNNNGG 5 cut(s) 112, 503, 535, 825, 945
BseMII CTCAG 2 cut(s) 377, 1074
BseNI ACTGG 1 cut(s) 1449
BseRI GAGGAG 6 cut(s) 149, 242, 245, 486, 995, 1153
BseXI GCAGC 5 cut(s) 406, 632, 1144, 1192, 1592
BsgI GTGCAG 3 cut(s) 639, 1265, 1454
Bsh1285I CGRYCG 1 cut(s) 1578
BshFI GGCC 4 cut(s) 116, 209, 332, 1215
BsiEI CGRYCG 1 cut(s) 1578
BsiHKCI CYCGRG 1 cut(s) 1302
BsiSI CCGG 3 cut(s) 29, 435, 1648
BslFI GGGAC 1 cut(s) 1373
BslI CCNNNNNNNGG 5 cut(s) 112, 503, 535, 825, 945
BsmAI GTCTC 4 cut(s) 32, 282, 1443, 1565
BsmBI CGTCTC 2 cut(s) 32, 1565
BsmFI GGGAC 1 cut(s) 1373
BsmI GAATGC 1 cut(s) 1716
BsnI GGCC 4 cut(s) 116, 209, 332, 1215
BsoBI CYCGRG 1 cut(s) 1302
Bsp13I TCCGGA 2 cut(s) 28, 1647
Bsp143I GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
Bsp19I CCATGG 1 cut(s) 1117
BspACI CCGC 2 cut(s) 1484, 1574
BspANI GGCC 4 cut(s) 116, 209, 332, 1215
BspCNI CTCAG 2 cut(s) 376, 1073
BspEI TCCGGA 2 cut(s) 28, 1647
BspLI GGNNCC 1 cut(s) 433
BspMAI CTGCAG 1 cut(s) 1572
BspPI GGATC 4 cut(s) 426, 439, 1247, 1259
BspQI GCTCTTC 1 cut(s) 1392
BsrI ACTGG 1 cut(s) 1449
BssECI CCNNGG 7 cut(s) 412, 561, 679, 711, 1117, 1269, 1608
BssMI GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
BssSI CACGAG 1 cut(s) 1209
BssT1I CCWWGG 4 cut(s) 711, 1117, 1269, 1608
Bst2BI CACGAG 1 cut(s) 1209
Bst2UI CCWGG 2 cut(s) 681, 1217
Bst4CI ACNGT 3 cut(s) 81, 598, 1559
Bst6I CTCTTC 4 cut(s) 126, 1054, 1344, 1392
BstC8I GCNNGC 1 cut(s) 1572
BstDEI CTNAG 5 cut(s) 363, 930, 1026, 1060, 1085
BstDSI CCRYGG 2 cut(s) 561, 1117
BstEII GGTNACC 1 cut(s) 934
BstHHI GCGC 1 cut(s) 1479
BstKTI GATC 6 cut(s) 399, 434, 874, 1255, 1267, 1567
BstMAI GTCTC 4 cut(s) 32, 282, 1443, 1565
BstMBI GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
BstMCI CGRYCG 1 cut(s) 1578
BstMWI GCNNNNNNNGC 3 cut(s) 1132, 1493, 1580
BstNI CCWGG 2 cut(s) 681, 1217
BstPI GGTNACC 1 cut(s) 934
BstSCI CCNGG 3 cut(s) 434, 679, 1215
BstSFI CTRYAG 1 cut(s) 1568
BstV1I GCAGC 5 cut(s) 406, 632, 1144, 1192, 1592
BstV2I GAAGAC 5 cut(s) 53, 182, 446, 1033, 1595
BstX2I RGATCY 1 cut(s) 431
BstXI CCANNNNNNTGG 1 cut(s) 1289
BstYI RGATCY 1 cut(s) 431
BsuRI GGCC 4 cut(s) 116, 209, 332, 1215
BtgI CCRYGG 2 cut(s) 561, 1117
BtrI CACGTC 1 cut(s) 1237
BtsI GCAGTG 1 cut(s) 1639
BtsIMutI CAGTG 1 cut(s) 1639
Cac8I GCNNGC 1 cut(s) 1572
CfoI GCGC 1 cut(s) 1479
Cfr13I GGNCC 2 cut(s) 115, 571
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 583, 1194
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 1 cut(s) 1118
CviQI GTAC 2 cut(s) 583, 1194
DdeI CTNAG 5 cut(s) 363, 930, 1026, 1060, 1085
DpnI GATC 6 cut(s) 398, 433, 873, 1254, 1266, 1566
DpnII GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
Eam1104I CTCTTC 4 cut(s) 126, 1054, 1344, 1392
EarI CTCTTC 4 cut(s) 126, 1054, 1344, 1392
Eco130I CCWWGG 4 cut(s) 711, 1117, 1269, 1608
Eco32I GATATC 1 cut(s) 1114
Eco47I GGWCC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 599
Eco88I CYCGRG 1 cut(s) 1302
Eco91I GGTNACC 1 cut(s) 934
EcoO109I RGGNCCY 1 cut(s) 571
EcoO65I GGTNACC 1 cut(s) 934
EcoRII CCWGG 2 cut(s) 679, 1215
EcoRV GATATC 1 cut(s) 1114
EcoT14I CCWWGG 4 cut(s) 711, 1117, 1269, 1608
ErhI CCWWGG 4 cut(s) 711, 1117, 1269, 1608
Esp3I CGTCTC 2 cut(s) 32, 1565
FaeI CATG 1 cut(s) 1121
FalI AAGNNNNNCTT 2 cut(s) 1529, 1561
FaqI GGGAC 1 cut(s) 1373
FatI CATG 1 cut(s) 1117
FblI GTMKAC 1 cut(s) 685
Fnu4HI GCNGC 6 cut(s) 420, 621, 1133, 1206, 1485, 1581
Fsp4HI GCNGC 6 cut(s) 420, 621, 1133, 1206, 1485, 1581
FspBI CTAG 4 cut(s) 423, 624, 879, 975
GlaI GCGC 1 cut(s) 1478
GluI GCNGC 6 cut(s) 420, 621, 1133, 1206, 1485, 1581
GsuI CTGGAG 2 cut(s) 686, 1242
HaeIII GGCC 4 cut(s) 116, 209, 332, 1215
HapII CCGG 3 cut(s) 29, 435, 1648
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 1479
Hin1II CATG 1 cut(s) 1121
Hin6I GCGC 1 cut(s) 1477
HinP1I GCGC 1 cut(s) 1477
HincII GTYRAC 2 cut(s) 601, 686
HindII GTYRAC 2 cut(s) 601, 686
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 9 cut(s) 89, 290, 361, 367, 442, 717, 1018, 1182, 1686
HpaII CCGG 3 cut(s) 29, 435, 1648
HphI GGTGA 5 cut(s) 161, 644, 928, 1547, 1624
Hpy166II GTNNAC 6 cut(s) 492, 601, 686, 868, 1234, 1555
Hpy188I TCNGA 8 cut(s) 85, 94, 366, 401, 416, 552, 579, 1078
Hpy188III TCNNGA 8 cut(s) 29, 338, 692, 703, 869, 1259, 1562, 1648
Hpy8I GTNNAC 6 cut(s) 492, 601, 686, 868, 1234, 1555
Hpy99I CGWCG 3 cut(s) 38, 55, 85
HpyCH4III ACNGT 3 cut(s) 81, 598, 1559
HpyCH4IV ACGT 3 cut(s) 643, 1092, 1236
HpyF10VI GCNNNNNNNGC 3 cut(s) 1132, 1493, 1580
HpyF3I CTNAG 5 cut(s) 363, 930, 1026, 1060, 1085
HpySE526I ACGT 3 cut(s) 643, 1092, 1236
Hsp92II CATG 1 cut(s) 1121
HspAI GCGC 1 cut(s) 1477
Kpn2I TCCGGA 2 cut(s) 28, 1647
Kzo9I GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 1 cut(s) 416
Lsp1109I GCAGC 5 cut(s) 406, 632, 1144, 1192, 1592
LweI GCATC 4 cut(s) 32, 1344, 1646, 1647
MaeI CTAG 4 cut(s) 423, 624, 879, 975
MaeII ACGT 3 cut(s) 643, 1092, 1236
MaeIII GTNAC 3 cut(s) 17, 934, 1055
MalI GATC 6 cut(s) 398, 433, 873, 1254, 1266, 1566
MboI GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
MflI RGATCY 1 cut(s) 431
MlyI GAGTC 3 cut(s) 284, 355, 436
MmeI TCCRAC 1 cut(s) 63
MroI TCCGGA 2 cut(s) 28, 1647
MseI TTAA 6 cut(s) 807, 1095, 1410, 1548, 1625, 1753
MspI CCGG 3 cut(s) 29, 435, 1648
MspR9I CCNGG 3 cut(s) 436, 681, 1217
Mva1269I GAATGC 1 cut(s) 1716
MvaI CCWGG 2 cut(s) 681, 1217
MwoI GCNNNNNNNGC 3 cut(s) 1132, 1493, 1580
NciI CCSGG 1 cut(s) 436
NcoI CCATGG 1 cut(s) 1117
NdeII GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
NlaIII CATG 1 cut(s) 1121
NlaIV GGNNCC 1 cut(s) 433
NmuCI GTSAC 1 cut(s) 934
PaeR7I CTCGAG 1 cut(s) 1302
PciSI GCTCTTC 1 cut(s) 1392
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 1300
PctI GAATGC 1 cut(s) 1716
PfeI GAWTC 6 cut(s) 89, 367, 717, 1018, 1182, 1686
PfoI TCCNGGA 1 cut(s) 434
PkrI GCNGC 6 cut(s) 421, 622, 1134, 1207, 1486, 1582
PleI GAGTC 3 cut(s) 284, 355, 436
PpsI GAGTC 3 cut(s) 284, 355, 436
PpuMI RGGWCCY 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 1410
Psp5II RGGWCCY 1 cut(s) 571
Psp6I CCWGG 2 cut(s) 679, 1215
PspEI GGTNACC 1 cut(s) 934
PspGI CCWGG 2 cut(s) 679, 1215
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 115, 571
PspPPI RGGWCCY 1 cut(s) 571
PspXI VCTCGAGB 1 cut(s) 1302
PstI CTGCAG 1 cut(s) 1572
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 2 cut(s) 584, 1195
RsaNI GTAC 2 cut(s) 583, 1194
SalI GTCGAC 1 cut(s) 684
SapI GCTCTTC 1 cut(s) 1392
SaqAI TTAA 6 cut(s) 807, 1095, 1410, 1548, 1625, 1753
SatI GCNGC 6 cut(s) 420, 621, 1133, 1206, 1485, 1581
Sau3AI GATC 6 cut(s) 396, 431, 871, 1252, 1264, 1564
Sau96I GGNCC 2 cut(s) 115, 571
SchI GAGTC 3 cut(s) 284, 355, 436
ScrFI CCNGG 3 cut(s) 436, 681, 1217
SfaNI GCATC 4 cut(s) 32, 1344, 1646, 1647
SfcI CTRYAG 1 cut(s) 1568
Sfr274I CTCGAG 1 cut(s) 1302
SinI GGWCC 1 cut(s) 571
SlaI CTCGAG 1 cut(s) 1302
SmlI CTYRAG 1 cut(s) 1302
SmoI CTYRAG 1 cut(s) 1302
SsiI CCGC 2 cut(s) 1484, 1574
SspMI CTAG 4 cut(s) 423, 624, 879, 975
StyD4I CCNGG 3 cut(s) 434, 679, 1215
StyI CCWWGG 4 cut(s) 711, 1117, 1269, 1608
TaaI ACNGT 3 cut(s) 81, 598, 1559
TaiI ACGT 3 cut(s) 646, 1095, 1239
TaqI TCGA 6 cut(s) 100, 685, 1294, 1303, 1563, 1735
TaqII GACCGA 1 cut(s) 1011
TatI WGTACW 1 cut(s) 1193
TauI GCSGC 1 cut(s) 1487
TfiI GAWTC 6 cut(s) 89, 367, 717, 1018, 1182, 1686
Tru1I TTAA 6 cut(s) 807, 1095, 1410, 1548, 1625, 1753
Tru9I TTAA 6 cut(s) 807, 1095, 1410, 1548, 1625, 1753
TscAI CASTG 1 cut(s) 1639
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 5 cut(s) 419, 620, 1132, 1205, 1580
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 9 cut(s) 203, 291, 709, 768, 809, 957, 1550, 1575, 1743
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 1639
VpaK11BI GGWCC 1 cut(s) 571
VspI ATTAAT 1 cut(s) 1410
XapI RAATTY 4 cut(s) 307, 1067, 1615, 1731
XhoI CTCGAG 1 cut(s) 1302
XmiI GTMKAC 1 cut(s) 685
XspI CTAG 4 cut(s) 423, 624, 879, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.