Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

82762866 .. 82774340

Gene Structure 11475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG583900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAAGTGACGTATGCATTCAGACACTCTTTGCCAGATATACTCGCGGGATAAATAATTTGAACAAACTGGGTACTTGGACTGTAGCAGTTCAAAATAACTTTTTATGGTTTTTTCCTTCAGTGCTGATCAAGTTTCTATTGAATGTGCAGAATAGGCAAACAGCTTTATTTTCTGCAACCCAGACTAAGAAGGTTGAAGATCTTGCTGGCTTTTCCTTCCGGACAACGCCTATGTATATAGATGTGGATGATGGGAGAACTAAGGCCACGAATATATATAGGGCTGCAACAGGGCTATTGTCTTCAGAAGAGGACAGGACTGGATTATGCAGTGTGATCCTCCAGATGAACCCAAGATGTGAATATATCCACAAGGCTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAAAGCACTACTTTTCCTCATTCCCGAAGAGTTGCAGGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

152

Amino Acids

17.01

Weight (kDa)

9.3

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	334
AcuI	CTGAAG	2 cut(s)	105, 291
AfaI	GTAC	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	64, 95, 145, 200
AluBI	AGCT	2 cut(s)	167, 392
AluI	AGCT	2 cut(s)	167, 392
AlwI	GGATC	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	222
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	287
BauI	CACGAG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	248
BclI	TGATCA	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	222
Bse1I	ACTGG	2 cut(s)	75, 328
BseAI	TCCGGA	1 cut(s)	222
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	75, 328
BseXI	GCAGC	1 cut(s)	274
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	269
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	3 cut(s)	129, 202, 339
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	75, 328
BssMI	GATC	3 cut(s)	129, 202, 339
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	2 cut(s)	306, 435
BstC8I	GCNNGC	2 cut(s)	211, 450
BstDEI	CTNAG	2 cut(s)	189, 264
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	3 cut(s)	132, 205, 342
BstMBI	GATC	3 cut(s)	129, 202, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	157
BstSFI	CTRYAG	1 cut(s)	84
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	129, 340
Cac8I	GCNNGC	2 cut(s)	211, 450
Csp6I	GTAC	1 cut(s)	75
CviJI	RGCY	8 cut(s)	167, 213, 269, 287, 298, 380, 392, 452
CviKI_1	RGCY	8 cut(s)	167, 213, 269, 287, 298, 380, 392, 452
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	2 cut(s)	189, 264
DpnI	GATC	3 cut(s)	131, 204, 341
DpnII	GATC	3 cut(s)	129, 202, 339
Eam1104I	CTCTTC	2 cut(s)	306, 435
EarI	CTCTTC	2 cut(s)	306, 435
Eco57I	CTGAAG	2 cut(s)	105, 291
EcoT22I	ATGCAT	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FauI	CCCGC	1 cut(s)	41
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	1 cut(s)	223
HpaII	CCGG	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	24, 310
Hpy188III	TCNNGA	3 cut(s)	223, 346, 437
HpyAV	CCTTC	4 cut(s)	129, 187, 229, 395
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	6 cut(s)	18, 151, 179, 290, 333, 448
HpyF10VI	GCNNNNNNNGC	1 cut(s)	157
HpyF3I	CTNAG	2 cut(s)	189, 264
HpySE526I	ACGT	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	222
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	129, 202, 339
Lsp1109I	GCAGC	1 cut(s)	274
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	3 cut(s)	131, 204, 341
MboI	GATC	3 cut(s)	129, 202, 339
MboII	GAAGA	4 cut(s)	212, 297, 323, 452
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	1 cut(s)	58
MnlI	CCTC	3 cut(s)	307, 353, 440
Mph1103I	ATGCAT	1 cut(s)	20
MroI	TCCGGA	1 cut(s)	222
MspI	CCGG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	18
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	157
NdeII	GATC	3 cut(s)	129, 202, 339
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	20
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PctI	GAATGC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	3 cut(s)	129, 202, 339
SetI	ASST	5 cut(s)	15, 169, 198, 394, 406
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	58
TscAI	CASTG	2 cut(s)	129, 340
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	287
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	129, 340
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.