Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

87659069 .. 87661719

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000037030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGACCAAGATCATTAAGGAGATGTTGACTCCACATGTACGTGTCGCTAGAGATGCTCAAGATCTTCTCATCGAGTGTTGTGTTGAAGATCTTGCTGGCTTGTCCTTCCAGACAACGCCTATTTATATAGATGTGAATGATGGGAGAAATAAGGGCTGCAACAGGGCTATTGTCTTATGCCAAGTGCCAAGAGATTTTATTCTCCTATATTCTTTCCTGACGAGGAATCTATCAAAGAAAGTGATGGTCTTCTTCTCTTCTTGCAACTCAGTAAAATTCCACTCTGACCTTCTTACATACGTTAATGTGGATTGCTTTGATATCCATGGAAACCAAAAGCAGCAGAAAAGGACAGGTACTCTTTTTGACTACTGCAAGGACTGGATTATGCAGTGTGATCCTCCAGATGAACCCAAGGCTGGTCGAACAGCTCGTGGGGAAGGTGGAAAAGGAAAAGCACTACTTTTCCTCATTCCCGAAGAGTTGCAGGAGAAGTTGGTTGCCAACAACTACCATCTGAACCGTGCAGCAAAAGATGCATATAGGTCTTATCTATTAGCATATAATACACACTCTATGAAGGACATATGTTCACCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

201

Amino Acids

22.75

Weight (kDa)

8.33

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	275
AfaI	GTAC	2 cut(s)	39, 358
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	2 cut(s)	34, 40
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	1 cut(s)	431
AluI	AGCT	1 cut(s)	431
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	156, 340, 527
ApoI	RAATTY	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	585
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	143, 352, 539
BccI	CCATC	3 cut(s)	134, 238, 522
BfaI	CTAG	1 cut(s)	48
BglII	AGATCT	2 cut(s)	61, 88
BisI	GCNGC	3 cut(s)	157, 341, 528
BlsI	GCNGC	3 cut(s)	158, 342, 529
BmsI	GCATC	2 cut(s)	43, 526
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	325, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	386
BseDI	CCNNGG	2 cut(s)	325, 414
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	143, 352, 539
BsgI	GTGCAG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	419
Bsp143I	GATC	4 cut(s)	9, 61, 88, 397
Bsp19I	CCATGG	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	281
BspPI	GGATC	1 cut(s)	392
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	386
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	325, 414
BssMI	GATC	4 cut(s)	9, 61, 88, 397
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	325, 414
Bst2BI	CACGAG	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	262, 474
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	268
BstDSI	CCRYGG	1 cut(s)	325
BstKTI	GATC	4 cut(s)	12, 64, 91, 400
BstMBI	GATC	4 cut(s)	9, 61, 88, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 536
BstNSI	RCATGY	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	143, 352, 539
BstV2I	GAAGAC	1 cut(s)	241
BstX2I	RGATCY	2 cut(s)	61, 88
BstYI	RGATCY	2 cut(s)	61, 88
BtgI	CCRYGG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	595
Csp6I	GTAC	2 cut(s)	38, 357
CviAII	CATG	2 cut(s)	35, 326
CviJI	RGCY	6 cut(s)	99, 156, 167, 419, 431, 599
CviKI_1	RGCY	6 cut(s)	99, 156, 167, 419, 431, 599
CviQI	GTAC	2 cut(s)	38, 357
DdeI	CTNAG	1 cut(s)	268
DpnI	GATC	4 cut(s)	11, 63, 90, 399
DpnII	GATC	4 cut(s)	9, 61, 88, 397
Eam1104I	CTCTTC	2 cut(s)	262, 474
EarI	CTCTTC	2 cut(s)	262, 474
Eco130I	CCWWGG	2 cut(s)	325, 414
Eco32I	GATATC	1 cut(s)	322
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	325, 414
EcoT22I	ATGCAT	1 cut(s)	541
ErhI	CCWWGG	2 cut(s)	325, 414
FaeI	CATG	2 cut(s)	38, 329
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	2 cut(s)	34, 325
FauNDI	CATATG	1 cut(s)	587
Fnu4HI	GCNGC	3 cut(s)	157, 341, 528
Fsp4HI	GCNGC	3 cut(s)	157, 341, 528
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	3 cut(s)	157, 341, 528
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	596
Hin1II	CATG	2 cut(s)	38, 329
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	28, 226
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	585
Hpy166II	GTNNAC	2 cut(s)	27, 593
Hpy188I	TCNGA	2 cut(s)	286, 519
Hpy188III	TCNNGA	5 cut(s)	59, 109, 217, 404, 476
Hpy8I	GTNNAC	2 cut(s)	27, 593
HpyAV	CCTTC	4 cut(s)	115, 299, 434, 574
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	2 cut(s)	40, 300
HpyCH4V	TGCA	7 cut(s)	159, 264, 375, 391, 487, 527, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 536
HpyF3I	CTNAG	1 cut(s)	268
HpySE526I	ACGT	2 cut(s)	40, 300
Hsp92II	CATG	2 cut(s)	38, 329
Kzo9I	GATC	4 cut(s)	9, 61, 88, 397
LpnPI	CCDG	9 cut(s)	81, 122, 148, 230, 339, 367, 405, 417, 473
Lsp1109I	GCAGC	3 cut(s)	143, 352, 539
LweI	GCATC	2 cut(s)	43, 526
MaeI	CTAG	1 cut(s)	48
MaeII	ACGT	2 cut(s)	40, 300
MalI	GATC	4 cut(s)	11, 63, 90, 399
MboI	GATC	4 cut(s)	9, 61, 88, 397
MboII	GAAGA	6 cut(s)	56, 98, 241, 244, 249, 491
MflI	RGATCY	2 cut(s)	61, 88
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	22
MnlI	CCTC	3 cut(s)	216, 411, 479
Mph1103I	ATGCAT	1 cut(s)	541
MseI	TTAA	2 cut(s)	15, 303
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	53, 536
NcoI	CCATGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	587
NdeII	GATC	4 cut(s)	9, 61, 88, 397
NlaIII	CATG	2 cut(s)	38, 329
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	1 cut(s)	38
PciI	ACATGT	1 cut(s)	34
PcsI	WCGNNNNNNNCGW	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	158, 342, 529
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Ppu21I	YACGTR	1 cut(s)	41
PscI	ACATGT	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	61, 88
RsaI	GTAC	2 cut(s)	39, 358
RsaNI	GTAC	2 cut(s)	38, 357
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	15, 303
SatI	GCNGC	3 cut(s)	157, 341, 528
Sau3AI	GATC	4 cut(s)	9, 61, 88, 397
SchI	GAGTC	1 cut(s)	22
SetI	ASST	7 cut(s)	43, 291, 303, 358, 433, 445, 548
SfaNI	GCATC	2 cut(s)	43, 526
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	275
SspMI	CTAG	1 cut(s)	48
StyI	CCWWGG	2 cut(s)	325, 414
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	2 cut(s)	43, 303
TaqI	TCGA	2 cut(s)	72, 424
TasI	AATT	1 cut(s)	275
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	15, 303
Tru9I	TTAA	2 cut(s)	15, 303
TscAI	CASTG	1 cut(s)	398
TseI	GCWGC	3 cut(s)	156, 340, 527
TspDTI	ATGAA	2 cut(s)	423, 593
TspRI	CASTG	1 cut(s)	398
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	38
XspI	CTAG	1 cut(s)	48
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.