Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003249

Physical Location & Seq

Genomic Coordinates Forward (+)

6659520 .. 6662875

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G096100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACAGACGCAATCCCTTACGCATCTTTCGAGGACGAGACGAAGAAGAAACGCAAGAGAAAGAGAGGAAAGACACCATCGGAATCGACTGGTGCAAAAGAATCTGAGCTTCAAAACCCTAAGGAGGTTATAGATCTTGCTAGCTTGTCATTGAGAGAACCTATCTTTATTGATGTGGATGATGGGAGAACTAAGGCCATCAATGCAGGGCTGCAACATGGCTATTGTATTGTGCCTAGTGAAAAGAGATTCATTCTCCTGTATTCTTTTCTGATGAAGAATCAGTCGAAGAAAGTGGTGGTCTTCTACTCTTCTTGTAAGTCAGTCAAATTCTACTCTGACCTTCTTAGATGCGTTAATGTGGATTGCTTTGATATCCATGGAGGGCAAAAGCAGCAGCAGAGGACAACTACTTTCCTTGACTTCTGCACAGCAGAGAAAGGAATCTTACTTTGCACTGATGTTGCTGCGCGTGGGTTGGATATTCCTGCTGTGGACGTGATTGTGCAGTTTGATCCTCCAGATGATCCCAAGGAATATATCCACAGGGTCGGTCGAACAGCTCGAGGGGAAGGTGGAAAAGGAAAGGCATTTATTTTCCTCATTCCCGAAGAGATGCAATTTATTCACTATTTGACGGCAGAAAAAGTCCCCGTTGCAGAACAACAAATTAGGAAGAATAGGCTGAAAAATGTGCAGTCTAAACTGGAGAAGATGGTTGAGGGCAACTACTATCTGCACCAATCAGCAAGAGAGGCATATAAATCTTATCTATTAGCATATAATTCACACTCTATGAAGGACATCTTTAACGTTCACCGTCTCGATCTACGGGCGGTCGCAGCTTCATTTTGCTTTTGTAGTCCCCACAAGGTGAATTTGAACTTAAGCAGCAGTGCATCAAAGCTCCGGAAGAAGATGCGCATGGGAGGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

313

Amino Acids

35.39

Weight (kDa)

9.33

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18600
fragaria_vesca	FvH4_5g12870
malus_domestica	MD05G1177700.v1.1 MD06G1209500.v1.1 MD14G1220200.v1.1 MD15G1015500.v1.1
prunus_persica	Prupe.5G214700_v2.0.a1 Prupe.6G096100_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G096400_v2.0.a1 Prupe.6G097300_v2.0.a1
pyrus_communis	pycom05g16360 pycom05g16400 pycom05g16410 pycom06g18710 pycom14g18230 pycom15g01320
rosa_chinensis	RchiOBHm_Chr5g0083351 RchiOBHm_Chr5g0083361 RchiOBHm_Chr7g0184361
rosa_laevigata	RLG00000004982 RLG00000037030
rosa_multiflora	Rmu_sc0001444.1_g000013 Rmu_sc0001557.1_g000022 Rmu_sc0002245.1_g000045
rosa_roxburghii	Rroxscaffold_1G00001130 Rroxscaffold_3G00269690
rosa_samantha	Rh5AG533800 Rh5BG561600 Rh5CG583900 Rh5CG584000 Rh7AG080700 Rh7BG066500 Rh7CG066800 Rh7DG066500
rosa_wichuraiana	Rw5G049900 Rw7G005460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	923
AccII	CGCG	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	909
AciI	CCGC	1 cut(s)	836
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	2 cut(s)	509, 521
AcsI	RAATTY	2 cut(s)	329, 877
AdeI	CACNNNGTG	1 cut(s)	874
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflII	CTTAAG	1 cut(s)	886
AgsI	TTSAA	2 cut(s)	113, 883
AjiI	CACGTC	1 cut(s)	499
AluBI	AGCT	5 cut(s)	109, 144, 563, 845, 907
AluI	AGCT	5 cut(s)	109, 144, 563, 845, 907
Alw26I	GTCTC	2 cut(s)	32, 827
AlwI	GGATC	2 cut(s)	509, 521
Ama87I	CYCGRG	1 cut(s)	564
Aor13HI	TCCGGA	1 cut(s)	909
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	6 cut(s)	211, 394, 397, 467, 842, 891
ApoI	RAATTY	2 cut(s)	329, 877
AspLEI	GCGC	2 cut(s)	472, 924
AsuHPI	GGTGA	2 cut(s)	809, 886
AsuNHI	GCTAGC	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	564
AxyI	CCTNAGG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	6 cut(s)	198, 406, 409, 454, 854, 903
BccI	CCATC	4 cut(s)	85, 176, 206, 709
BceAI	ACGGC	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	32, 827
BfaI	CTAG	2 cut(s)	141, 237
BfrI	CTTAAG	1 cut(s)	886
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	6 cut(s)	212, 395, 398, 468, 843, 892
BlsI	GCNGC	6 cut(s)	213, 396, 399, 469, 844, 893
BmeT110I	CYCGRG	1 cut(s)	564
BmgBI	CACGTC	1 cut(s)	499
BmsI	GCATC	5 cut(s)	32, 341, 606, 908, 909
BmtI	GCTAGC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	295
BpmI	CTGGAG	2 cut(s)	504, 728
BsaJI	CCNNGG	2 cut(s)	379, 531
BsaWI	WCCGGW	1 cut(s)	909
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	94, 711
Bse21I	CCTNAGG	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	909
BseDI	CCNNGG	2 cut(s)	379, 531
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	2 cut(s)	94, 711
BseXI	GCAGC	6 cut(s)	198, 406, 409, 454, 854, 903
BsgI	GTGCAG	4 cut(s)	412, 527, 716, 722
Bsh1236I	CGCG	1 cut(s)	472
Bsh1285I	CGRYCG	2 cut(s)	556, 840
BshFI	GGCC	1 cut(s)	197
BsiEI	CGRYCG	2 cut(s)	556, 840
BsiHKCI	CYCGRG	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	910
BslFI	GGGAC	2 cut(s)	635, 849
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	32, 827
BsmBI	CGTCTC	2 cut(s)	32, 827
BsmFI	GGGAC	2 cut(s)	635, 849
BsnI	GGCC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	564
Bsp13I	TCCGGA	1 cut(s)	909
Bsp143I	GATC	4 cut(s)	133, 514, 526, 826
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	1 cut(s)	836
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	909
BspFNI	CGCG	1 cut(s)	472
BspOI	GCTAGC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	509, 521
BspTI	CTTAAG	1 cut(s)	886
BsrI	ACTGG	2 cut(s)	94, 711
BssECI	CCNNGG	2 cut(s)	379, 531
BssMI	GATC	4 cut(s)	133, 514, 526, 826
BssT1I	CCWWGG	2 cut(s)	379, 531
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	2 cut(s)	316, 606
BstAFI	CTTAAG	1 cut(s)	886
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	4 cut(s)	105, 120, 192, 347
BstDSI	CCRYGG	1 cut(s)	379
BstF5I	GGATG	1 cut(s)	184
BstFNI	CGCG	1 cut(s)	472
BstHHI	GCGC	2 cut(s)	472, 924
BstKTI	GATC	4 cut(s)	136, 517, 529, 829
BstMAI	GTCTC	2 cut(s)	32, 827
BstMBI	GATC	4 cut(s)	133, 514, 526, 826
BstMCI	CGRYCG	2 cut(s)	556, 840
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 394, 755, 842
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	6 cut(s)	198, 406, 409, 454, 854, 903
BstV2I	GAAGAC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
Bsu36I	CCTNAGG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	197
BtgI	CCRYGG	1 cut(s)	379
BtrI	CACGTC	1 cut(s)	499
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	2 cut(s)	456, 901
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	2 cut(s)	472, 924
CseI	GACGC	1 cut(s)	17
CviAII	CATG	3 cut(s)	218, 380, 925
CviJI	RGCY	9 cut(s)	109, 144, 197, 211, 222, 563, 685, 845, 907
CviKI_1	RGCY	9 cut(s)	109, 144, 197, 211, 222, 563, 685, 845, 907
DdeI	CTNAG	4 cut(s)	105, 120, 192, 347
DpnI	GATC	4 cut(s)	135, 516, 528, 828
DpnII	GATC	4 cut(s)	133, 514, 526, 826
DraIII	CACNNNGTG	1 cut(s)	874
Eam1104I	CTCTTC	2 cut(s)	316, 606
EarI	CTCTTC	2 cut(s)	316, 606
Eco130I	CCWWGG	2 cut(s)	379, 531
Eco32I	GATATC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	379, 531
ErhI	CCWWGG	2 cut(s)	379, 531
Esp3I	CGTCTC	2 cut(s)	32, 827
FaeI	CATG	3 cut(s)	221, 383, 928
FalI	AAGNNNNNCTT	2 cut(s)	791, 823
FaqI	GGGAC	2 cut(s)	635, 849
FatI	CATG	3 cut(s)	217, 379, 924
Fnu4HI	GCNGC	6 cut(s)	212, 395, 398, 468, 843, 892
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	6 cut(s)	212, 395, 398, 468, 843, 892
FspAI	RTGCGCAY	1 cut(s)	923
FspBI	CTAG	2 cut(s)	141, 237
FspI	TGCGCA	1 cut(s)	923
GlaI	GCGC	2 cut(s)	471, 923
GluI	GCNGC	6 cut(s)	212, 395, 398, 468, 843, 892
GsuI	CTGGAG	2 cut(s)	504, 728
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	910
HgaI	GACGC	1 cut(s)	17
HhaI	GCGC	2 cut(s)	472, 924
Hin1II	CATG	3 cut(s)	221, 383, 928
Hin6I	GCGC	2 cut(s)	470, 922
HinP1I	GCGC	2 cut(s)	470, 922
HinfI	GANTC	5 cut(s)	83, 101, 249, 280, 444
HpaII	CCGG	1 cut(s)	910
HphI	GGTGA	2 cut(s)	809, 886
Hpy166II	GTNNAC	2 cut(s)	496, 817
Hpy188I	TCNGA	4 cut(s)	82, 106, 273, 340
Hpy188III	TCNNGA	4 cut(s)	521, 608, 824, 910
Hpy8I	GTNNAC	2 cut(s)	496, 817
HpyAV	CCTTC	3 cut(s)	353, 566, 793
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	2 cut(s)	498, 813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 394, 755, 842
HpyF3I	CTNAG	4 cut(s)	105, 120, 192, 347
HpySE526I	ACGT	2 cut(s)	498, 813
Hsp92II	CATG	3 cut(s)	221, 383, 928
HspAI	GCGC	2 cut(s)	470, 922
Kpn2I	TCCGGA	1 cut(s)	909
Kzo9I	GATC	4 cut(s)	133, 514, 526, 826
LmnI	GCTCC	1 cut(s)	912
LpnPI	CCDG	8 cut(s)	75, 192, 272, 501, 532, 534, 692, 923
Lsp1109I	GCAGC	6 cut(s)	198, 406, 409, 454, 854, 903
LweI	GCATC	5 cut(s)	32, 341, 606, 908, 909
MaeI	CTAG	2 cut(s)	141, 237
MaeII	ACGT	2 cut(s)	498, 813
MalI	GATC	4 cut(s)	135, 516, 528, 828
MboI	GATC	4 cut(s)	133, 514, 526, 826
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	5 cut(s)	329, 620, 669, 784, 877
MmeI	TCCRAC	1 cut(s)	459
MroI	TCCGGA	1 cut(s)	909
MseI	TTAA	3 cut(s)	357, 810, 887
MspCI	CTTAAG	1 cut(s)	886
MspI	CCGG	1 cut(s)	910
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	4 cut(s)	203, 394, 755, 842
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	4 cut(s)	133, 514, 526, 826
NheI	GCTAGC	1 cut(s)	140
NlaIII	CATG	3 cut(s)	221, 383, 928
NsbI	TGCGCA	1 cut(s)	923
PaeR7I	CTCGAG	1 cut(s)	564
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 562
PfeI	GAWTC	5 cut(s)	83, 101, 249, 280, 444
PkrI	GCNGC	6 cut(s)	213, 396, 399, 469, 844, 893
Psp1406I	AACGTT	1 cut(s)	813
PspXI	VCTCGAGB	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	357, 810, 887
SatI	GCNGC	6 cut(s)	212, 395, 398, 468, 843, 892
Sau3AI	GATC	4 cut(s)	133, 514, 526, 826
SfaNI	GCATC	5 cut(s)	32, 341, 606, 908, 909
Sfr274I	CTCGAG	1 cut(s)	564
SlaI	CTCGAG	1 cut(s)	564
SmlI	CTYRAG	2 cut(s)	564, 886
SmoI	CTYRAG	2 cut(s)	564, 886
Sse9I	AATT	5 cut(s)	329, 620, 669, 784, 877
SsiI	CCGC	1 cut(s)	836
SspMI	CTAG	2 cut(s)	141, 237
StyI	CCWWGG	2 cut(s)	379, 531
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	2 cut(s)	501, 816
TaqI	TCGA	6 cut(s)	30, 86, 287, 556, 565, 825
TaqII	GACCGA	1 cut(s)	542
TasI	AATT	5 cut(s)	329, 620, 669, 784, 877
TfiI	GAWTC	5 cut(s)	83, 101, 249, 280, 444
Tru1I	TTAA	3 cut(s)	357, 810, 887
Tru9I	TTAA	3 cut(s)	357, 810, 887
TscAI	CASTG	2 cut(s)	463, 901
TseI	GCWGC	6 cut(s)	211, 394, 397, 467, 842, 891
TspDTI	ATGAA	4 cut(s)	241, 290, 812, 837
TspRI	CASTG	2 cut(s)	463, 901
Vha464I	CTTAAG	1 cut(s)	886
XapI	RAATTY	2 cut(s)	329, 877
XhoI	CTCGAG	1 cut(s)	564
XspI	CTAG	2 cut(s)	141, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.