pycom06g18710

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
22350966 .. 22354842
3877 bp
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UTR
Exon/CDS
Intron
pycom06g18710.9

Sequence Viewer

Length: 1674 bp
ATGACAGACCAAAACCTTCACGCGCCGCCGGAGGACGAGACGAAGAAGAAGAAGCGCAAGAGAAACAGAGCGAAGAAGCCGTCGGAATCGGCGGGTACGGAGCAACCGGAGCCCGAAAATACTAAGGGGGAACAGGCTAAGGGCGAGAGCGAGAAGAAAAGGAAGAAGGTGAAGAAATTGAAGGGAGAGGAACCGGAGGCTCAGAGCCCTGTGGAGGACAATGAGGAAGAAGAAGAGGAGGGGGAAGAAGCAATGGAGGAGGAGGAGGAGGAGGAGAGGAAAGTGAGAAGTGGCGGCGGAGGGACTGGGATTATGAGCACGGAGTCGTTTGCTTCGTTGAATTTGTCTGAGAACACTTACAAGGCCATTGAAGAAATGAAGTTTCAGTATATGACTCAGATTCAAGCTAGAGCAATCCCACCGCTCTTGATCGGGAAAGATGTCCTCGGAGCTGCAAGGACAGGGTCTGGTAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGCTATATAATACACATTTTGCTCCTCGTAACGGAATGGGTGTTGTTGTGATTTGCCCAACACGGGAACTTGCAATACAGACCCATGCTGTGGCAAAGGACCTTCTAAAGTATCACTCTCAGACTCTTGGCTTGGTAATTGGAGGTTCAGCTAGGAGAGGGGAAGCAGAGCGTATTGTAAAAGGAGTAAATTTATTGGTTGCAACCCCTGGTCGACTTCTTGACCATCTTCAGAATACCAAGGGATTCATATATAAGAACTTGAAGTGCCTCGTGATTGATGAAGCTGACAGGTTATTGGAAGCAAACTTTGAGGAGGAAATGAAACAGATTGTCAAGATTCTGCCAAAGGATAGGCAAACAGCTTTATTTTCAGCAACCCAAACCAAGAAGGTTGAAGATCTTGTTAAGTTGTCGTTTCGAAAAGATCAGAAACCTATCTACGTTGATGTGGACGAGGGGAGGTCAAAGGTCACCAATGAAGGGCTGGAACAAGGCTATTGTGTTGTGCCAAGTGCTAAGAGATTTCTACTCTTATATTCCTTCCTGATAAAGAATACGTCTAAGAAAGTTATGGTCTTCTTCTCGTCTTGTAACTCAGTGAAATTTCACTCTGAACTTCTTAGATACGTTAATGTGGATTGCTTTGATATCCATGGAAAGCAAAAGCAGCAGAAGAGGACAACTACTTTCTTTGACTTTTGCAAAGCAGAGAAAGGAATCTTACTTTGTACTGATGTTGCTGCTCGTGGACTAGATATTCCTGCTGTGGACTGGATTTTGCAGTTTGATCCTCCAGATGAACCGACGGAATATATCCATAGGGTTGGTCGAACAGCTCGAGGGGAAGGTGCAAAAGGAAAGGCACTACTTTTCCTCATTCCTGAAGAGTTGCAATTCATTCGCTATTTGAAGGCTGCAAATGTCCCCGTTAAACCATACGATTTTAATGAAAAGAAGCTGAAGAATGTGCAGTCTAAACTGGAGGAGATGGCGGTTGCAGCTTCGTTTTGCTTTTCTAATCCACCCAAGGTGCATTTGAACCTAGACAGCAACAAATCAAAGTTCAAGAAGAAGATGCGTAAAGAAGTAAGTCGAAATGGATTCAGTGAGAGCAATCCTTACGGCAATCGAAAAGGCGGAGACGATAGACAATTTGTAAGGCACTAG

Protein Analysis

558

Amino Acids

62.85

Weight (kDa)

8.95

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 718
AccII CGCG 1 cut(s) 23
AciI CCGC 7 cut(s) 26, 92, 294, 297, 422, 1499, 1644
AclWI GGATC 1 cut(s) 1289
AcsI RAATTY 3 cut(s) 340, 694, 1109
AcuI CTGAAG 3 cut(s) 719, 1410, 1487
AfaI GTAC 2 cut(s) 97, 1237
AfiI CCNNNNNNNGG 5 cut(s) 214, 536, 568, 595, 987
AgsI TTSAA 9 cut(s) 181, 340, 371, 404, 769, 902, 1417, 1546, 1573
AjnI CCWGG 1 cut(s) 712
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 32, 1641
AlwI GGATC 1 cut(s) 1289
AlwNI CAGNNNCTG 1 cut(s) 467
Ama87I CYCGRG 1 cut(s) 1344
AoxI GGCC 1 cut(s) 363
ApeKI GCWGC 6 cut(s) 452, 505, 1174, 1247, 1421, 1505
ApoI RAATTY 3 cut(s) 340, 694, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspLEI GCGC 2 cut(s) 25, 57
AspS9I GGNCC 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 181, 970
AsuII TTCGAA 1 cut(s) 925
AvaI CYCGRG 1 cut(s) 1344
AvaII GGWCC 1 cut(s) 604
BanII GRGCYC 2 cut(s) 114, 209
BauI CACGAG 2 cut(s) 776, 1251
BbsI GAAGAC 1 cut(s) 1075
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 6 cut(s) 439, 492, 1186, 1234, 1408, 1517
BccI CCATC 2 cut(s) 738, 1489
BceAI ACGGC 2 cut(s) 64, 1645
BcgI CGANNNNNNTGC 2 cut(s) 1388, 1422
BciT130I CCWGG 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 32, 1641
BfaI CTAG 5 cut(s) 408, 657, 1259, 1550, 1672
BglII AGATCT 1 cut(s) 904
BisI GCNGC 8 cut(s) 26, 295, 453, 506, 1175, 1248, 1422, 1506
BlsI GCNGC 8 cut(s) 27, 296, 454, 507, 1176, 1249, 1423, 1507
Bme1390I CCNGG 1 cut(s) 714
Bme18I GGWCC 1 cut(s) 604
BmeT110I CYCGRG 1 cut(s) 1344
BmgT120I GGNCC 1 cut(s) 604
BmiI GGNNCC 2 cut(s) 111, 192
BmrFI CCNGG 1 cut(s) 714
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 1572
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 1075
BpmI CTGGAG 2 cut(s) 1284, 1508
Bpu10I CCTNAGC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 925
BsaJI CCNNGG 5 cut(s) 445, 712, 744, 1159, 1533
BsaWI WCCGGW 2 cut(s) 106, 193
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 536, 568, 595, 987
Bse1I ACTGG 3 cut(s) 310, 1283, 1491
Bse3DI GCAATG 1 cut(s) 258
BseBI CCWGG 1 cut(s) 714
BseDI CCNNGG 5 cut(s) 445, 712, 744, 1159, 1533
BseLI CCNNNNNNNGG 5 cut(s) 214, 536, 568, 595, 987
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 5 cut(s) 215, 339, 410, 638, 1116
BseNI ACTGG 3 cut(s) 310, 1283, 1491
BseXI GCAGC 6 cut(s) 439, 492, 1186, 1234, 1408, 1517
BsgI GTGCAG 1 cut(s) 1496
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 1344
BsiSI CCGG 3 cut(s) 29, 107, 194
BslFI GGGAC 2 cut(s) 316, 1415
BslI CCNNNNNNNGG 5 cut(s) 214, 536, 568, 595, 987
BsmAI GTCTC 2 cut(s) 32, 1641
BsmBI CGTCTC 2 cut(s) 32, 1641
BsmFI GGGAC 2 cut(s) 316, 1415
BsnI GGCC 1 cut(s) 365
BsoBI CYCGRG 1 cut(s) 1344
Bsp119I TTCGAA 1 cut(s) 925
Bsp1286I GDGCHC 3 cut(s) 114, 209, 320
Bsp143I GATC 4 cut(s) 429, 904, 931, 1294
Bsp19I CCATGG 1 cut(s) 1159
BspACI CCGC 7 cut(s) 26, 92, 294, 297, 422, 1499, 1644
BspANI GGCC 1 cut(s) 365
BspCNI CTCAG 5 cut(s) 214, 340, 409, 637, 1115
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 2 cut(s) 111, 192
BspPI GGATC 1 cut(s) 1289
BspT104I TTCGAA 1 cut(s) 925
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 3 cut(s) 310, 1283, 1491
BssECI CCNNGG 5 cut(s) 445, 712, 744, 1159, 1533
BssMI GATC 4 cut(s) 429, 904, 931, 1294
BssSI CACGAG 2 cut(s) 776, 1251
BssT1I CCWWGG 3 cut(s) 744, 1159, 1533
Bst2BI CACGAG 2 cut(s) 776, 1251
Bst2UI CCWGG 1 cut(s) 714
Bst6I CTCTTC 3 cut(s) 228, 1175, 1386
BstBI TTCGAA 1 cut(s) 925
BstDSI CCRYGG 1 cut(s) 1159
BstEII GGTNACC 1 cut(s) 976
BstFNI CGCG 1 cut(s) 23
BstHHI GCGC 2 cut(s) 25, 57
BstKTI GATC 4 cut(s) 432, 907, 934, 1297
BstMAI GTCTC 2 cut(s) 32, 1641
BstMBI GATC 4 cut(s) 429, 904, 931, 1294
BstMWI GCNNNNNNNGC 3 cut(s) 109, 1174, 1505
BstNI CCWGG 1 cut(s) 714
BstPI GGTNACC 1 cut(s) 976
BstSCI CCNGG 1 cut(s) 712
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 6 cut(s) 439, 492, 1186, 1234, 1408, 1517
BstV2I GAAGAC 1 cut(s) 1075
BstX2I RGATCY 1 cut(s) 904
BstXI CCANNNNNNTGG 1 cut(s) 1331
BstYI RGATCY 1 cut(s) 904
BsuRI GGCC 1 cut(s) 365
BtgI CCRYGG 1 cut(s) 1159
BtsIMutI CAGTG 2 cut(s) 1110, 1618
CaiI CAGNNNCTG 1 cut(s) 467
CfoI GCGC 2 cut(s) 25, 57
Cfr13I GGNCC 1 cut(s) 604
Csp6I GTAC 2 cut(s) 96, 1236
CspCI CAANNNNNGTGG 2 cut(s) 408, 443
CviAII CATG 2 cut(s) 590, 1160
CviQI GTAC 2 cut(s) 96, 1236
DpnI GATC 4 cut(s) 431, 906, 933, 1296
DpnII GATC 4 cut(s) 429, 904, 931, 1294
Eam1104I CTCTTC 3 cut(s) 228, 1175, 1386
EarI CTCTTC 3 cut(s) 228, 1175, 1386
EciI GGCGGA 2 cut(s) 312, 1659
Eco130I CCWWGG 3 cut(s) 744, 1159, 1533
Eco24I GRGCYC 2 cut(s) 114, 209
Eco32I GATATC 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 604
Eco57I CTGAAG 3 cut(s) 719, 1410, 1487
Eco88I CYCGRG 1 cut(s) 1344
Eco91I GGTNACC 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 604
EcoO65I GGTNACC 1 cut(s) 976
EcoRII CCWGG 1 cut(s) 712
EcoRV GATATC 1 cut(s) 1156
EcoT14I CCWWGG 3 cut(s) 744, 1159, 1533
EcoT38I GRGCYC 2 cut(s) 114, 209
ErhI CCWWGG 3 cut(s) 744, 1159, 1533
Esp3I CGTCTC 2 cut(s) 32, 1641
FaeI CATG 2 cut(s) 593, 1163
FaqI GGGAC 2 cut(s) 316, 1415
FatI CATG 2 cut(s) 589, 1159
FauI CCCGC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 718
Fnu4HI GCNGC 8 cut(s) 26, 295, 453, 506, 1175, 1248, 1422, 1506
FriOI GRGCYC 2 cut(s) 114, 209
Fsp4HI GCNGC 8 cut(s) 26, 295, 453, 506, 1175, 1248, 1422, 1506
FspBI CTAG 5 cut(s) 408, 657, 1259, 1550, 1672
GlaI GCGC 2 cut(s) 24, 56
GluI GCNGC 8 cut(s) 26, 295, 453, 506, 1175, 1248, 1422, 1506
GsuI CTGGAG 2 cut(s) 1284, 1508
HaeIII GGCC 1 cut(s) 365
HapII CCGG 3 cut(s) 29, 107, 194
HhaI GCGC 2 cut(s) 25, 57
Hin1II CATG 2 cut(s) 593, 1163
Hin6I GCGC 2 cut(s) 23, 55
HinP1I GCGC 2 cut(s) 23, 55
HincII GTYRAC 1 cut(s) 719
HindII GTYRAC 1 cut(s) 719
HinfI GANTC 9 cut(s) 86, 323, 394, 400, 628, 750, 844, 1224, 1608
HpaII CCGG 3 cut(s) 29, 107, 194
HphI GGTGA 2 cut(s) 181, 970
Hpy166II GTNNAC 4 cut(s) 719, 958, 1256, 1276
Hpy188I TCNGA 9 cut(s) 85, 204, 349, 399, 449, 627, 738, 936, 1120
Hpy188III TCNNGA 9 cut(s) 427, 433, 725, 778, 841, 1051, 1301, 1388, 1573
Hpy8I GTNNAC 4 cut(s) 719, 958, 1256, 1276
Hpy99I CGWCG 2 cut(s) 85, 1315
HpyAV CCTTC 9 cut(s) 26, 160, 175, 617, 889, 980, 1057, 1346, 1411
HpyCH4IV ACGT 3 cut(s) 948, 1064, 1134
HpyF10VI GCNNNNNNNGC 3 cut(s) 109, 1174, 1505
HpySE526I ACGT 3 cut(s) 948, 1064, 1134
Hsp92II CATG 2 cut(s) 593, 1163
HspAI GCGC 2 cut(s) 23, 55
Kzo9I GATC 4 cut(s) 429, 904, 931, 1294
LmnI GCTCC 5 cut(s) 100, 109, 449, 502, 532
Lsp1109I GCAGC 6 cut(s) 439, 492, 1186, 1234, 1408, 1517
LweI GCATC 1 cut(s) 1572
MaeI CTAG 5 cut(s) 408, 657, 1259, 1550, 1672
MaeII ACGT 3 cut(s) 948, 1064, 1134
MaeIII GTNAC 3 cut(s) 533, 976, 1097
MalI GATC 4 cut(s) 431, 906, 933, 1296
MbiI CCGCTC 1 cut(s) 424
MboI GATC 4 cut(s) 429, 904, 931, 1294
MflI RGATCY 1 cut(s) 904
MhlI GDGCHC 3 cut(s) 114, 209, 320
MluCI AATT 7 cut(s) 176, 340, 642, 694, 1109, 1400, 1658
MlyI GAGTC 3 cut(s) 332, 388, 622
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 4 cut(s) 912, 1137, 1437, 1452
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 3 cut(s) 29, 107, 194
MspR9I CCNGG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 714
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 3 cut(s) 109, 1174, 1505
NcoI CCATGG 1 cut(s) 1159
NdeII GATC 4 cut(s) 429, 904, 931, 1294
NlaIII CATG 2 cut(s) 593, 1163
NlaIV GGNNCC 2 cut(s) 111, 192
NmuCI GTSAC 1 cut(s) 976
NspV TTCGAA 1 cut(s) 925
PaeR7I CTCGAG 1 cut(s) 1344
PcsI WCGNNNNNNNCGW 2 cut(s) 332, 1342
PfeI GAWTC 6 cut(s) 86, 400, 750, 844, 1224, 1608
PflFI GACNNNGTC 1 cut(s) 463
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 8 cut(s) 27, 296, 454, 507, 1176, 1249, 1423, 1507
PleI GAGTC 3 cut(s) 331, 388, 622
PpsI GAGTC 3 cut(s) 331, 388, 622
PpuMI RGGWCCY 1 cut(s) 604
Psp5II RGGWCCY 1 cut(s) 604
Psp6I CCWGG 1 cut(s) 712
PspEI GGTNACC 1 cut(s) 976
PspGI CCWGG 1 cut(s) 712
PspN4I GGNNCC 2 cut(s) 111, 192
PspPI GGNCC 1 cut(s) 604
PspPPI RGGWCCY 1 cut(s) 604
PspXI VCTCGAGB 1 cut(s) 1344
PsrI GAACNNNNNNTAC 2 cut(s) 564, 596
PstNI CAGNNNCTG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 904
PsyI GACNNNGTC 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 2 cut(s) 97, 1237
RsaNI GTAC 2 cut(s) 96, 1236
SalI GTCGAC 1 cut(s) 717
SaqAI TTAA 4 cut(s) 912, 1137, 1437, 1452
SatI GCNGC 8 cut(s) 26, 295, 453, 506, 1175, 1248, 1422, 1506
Sau3AI GATC 4 cut(s) 429, 904, 931, 1294
Sau96I GGNCC 1 cut(s) 604
SchI GAGTC 3 cut(s) 332, 388, 622
ScrFI CCNGG 1 cut(s) 714
SduI GDGCHC 3 cut(s) 114, 209, 320
SfaNI GCATC 1 cut(s) 1572
Sfr274I CTCGAG 1 cut(s) 1344
SfuI TTCGAA 1 cut(s) 925
SinI GGWCC 1 cut(s) 604
SlaI CTCGAG 1 cut(s) 1344
SmlI CTYRAG 1 cut(s) 1344
SmoI CTYRAG 1 cut(s) 1344
Sse9I AATT 7 cut(s) 176, 340, 642, 694, 1109, 1400, 1658
SsiI CCGC 7 cut(s) 26, 92, 294, 297, 422, 1499, 1644
SspMI CTAG 5 cut(s) 408, 657, 1259, 1550, 1672
StyD4I CCNGG 1 cut(s) 712
StyI CCWWGG 3 cut(s) 744, 1159, 1533
TaiI ACGT 3 cut(s) 951, 1067, 1137
TaqI TCGA 6 cut(s) 718, 925, 1336, 1345, 1600, 1636
TasI AATT 7 cut(s) 176, 340, 642, 694, 1109, 1400, 1658
TatI WGTACW 1 cut(s) 1235
TauI GCSGC 2 cut(s) 28, 297
TfiI GAWTC 6 cut(s) 86, 400, 750, 844, 1224, 1608
Tru1I TTAA 4 cut(s) 912, 1137, 1437, 1452
Tru9I TTAA 4 cut(s) 912, 1137, 1437, 1452
TscAI CASTG 2 cut(s) 1110, 1618
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 6 cut(s) 452, 505, 1174, 1247, 1421, 1505
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 8 cut(s) 392, 742, 801, 842, 999, 1320, 1393, 1470
TspGWI ACGGA 4 cut(s) 113, 335, 552, 1328
TspRI CASTG 2 cut(s) 1110, 1618
Tth111I GACNNNGTC 1 cut(s) 463
Van91I CCANNNNNTGG 1 cut(s) 595
VpaK11BI GGWCC 1 cut(s) 604
XapI RAATTY 3 cut(s) 340, 694, 1109
XcmI CCANNNNNNNNNTGG 1 cut(s) 988
XhoI CTCGAG 1 cut(s) 1344
XmiI GTMKAC 1 cut(s) 718
XspI CTAG 5 cut(s) 408, 657, 1259, 1550, 1672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.