Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

22143649 .. 22144942

Gene Structure 1294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1092000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGCCACCGTCGTATGAGATAGCAGCTCTGATACAAAAATGCACCTCCGTAACCTCGCCGAAACAAGCGCGGCAGCTCCACGCTCTCCTCCTTACCACCACCACCGACGGCTCGCGCCCGCCGCACCTGTACAACAATGTCATATCCAAGTACTGGCGATGTGGATCGCTTGGGGACTCGCGGAAGATGTTTGACAAAATGCCTCAACGAAATCTGGTTTCATTCAATGCGCTCATTGCGGCCTATTCCTGGGACTCAAACAGTGCGATTTTGGCTTGTGAGCTATTTAACGAAATGGGAGTTGAATGTCTTAGGCCAAATGGTTCGACTTTCACGATCTTACTGCGGGCGTCTTATACTCTTGAGGATTGGTTGATTGGCTCTTTGATTCATGCCCAAGTTCTGAAGTTTGGGTTCTTGAGTGATGTTTATCTTCAAACTGCTTTACTTGGGATGTACTCCAACTGTAGGGATTTGGAATCAGCGAGGAAAGTTTTTGGCGGGATGGTTGAAAAAGATGTTGTTGCTTGGAATTCAATGATTTTTGGGAATTTGAAGATTGATGAGACAGCGGAAGGGCTTTCTCTCTTTGATGGCATGTTGAGGACTGGAATTGTTCCTACTCAATTCACATATTCAATGGTCTTGACTGCTTGCAACAGATTAAGATATTTTTATCCGGGGAAACTCATCCATGCCCGAGTCATAGTTTCAAAAACGCTAGCTGATTTAGCTTTGCAGAATTCCTTGTTTGACATGTATTGCAATTCTGGTGACACTCGAGTAGCATTTGGCATGTTTAAGGGAATGTGCAACCTGGATTTGGTCTCTTGGAACACAATGATTTCTGGGTGTTCGGAACATGGTGATGTCATCAAATCCGCAACAGGCACAGATCTAGTTTCCAACTATGGCAAGTCACTTCACGGACAGGTCACAAAAGCAGGATTTGAGAAGAGCATTTTTGTAGGAACTGCACTAGTGTCTATGTATTTTCGAAATGCTGAATCGGATGATGCTCAGAAGGTGTTTTATCCCATCATAAAGAAGGATGTTGTTCTATGGACTGAGATGATCATGGGTTTTTCGAGATTGACTGATGGGGAGAATGCAATTAAGTTCTTTTATGAAATGTGCCAGGAAGACCATAAGATTGACAGCTTTGCTCTCAGTGGAGTGTTGAGTGCTTTGTTCCGACCTTGCCATGCTAAAACAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

407

Amino Acids

45.34

Weight (kDa)

7.94

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	71 - 117	1.1e-06	PPR repeat family
PPR_2	PF13041	172 - 219	2.6e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	153
AccII	CGCG	3 cut(s)	70, 115, 181
AciI	CCGC	9 cut(s)	70, 119, 122, 181, 239, 346, 501, 572, 882
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	532, 550, 742
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	350
AfaI	GTAC	3 cut(s)	131, 152, 458
AfiI	CCNNNNNNNGG	4 cut(s)	153, 249, 468, 823
AflIII	ACRYGT	1 cut(s)	756
AgsI	TTSAA	8 cut(s)	226, 305, 437, 512, 537, 556, 639, 714
AhlI	ACTAGT	1 cut(s)	979
AjnI	CCWGG	3 cut(s)	248, 816, 1137
AluBI	AGCT	6 cut(s)	26, 76, 283, 725, 734, 1161
AluI	AGCT	6 cut(s)	26, 76, 283, 725, 734, 1161
Alw26I	GTCTC	2 cut(s)	560, 832
AlwI	GGATC	1 cut(s)	172
Ama87I	CYCGRG	2 cut(s)	699, 780
AoxI	GGCC	2 cut(s)	240, 314
ApeKI	GCWGC	2 cut(s)	23, 73
ApoI	RAATTY	3 cut(s)	532, 550, 742
AspLEI	GCGC	3 cut(s)	70, 117, 232
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	2 cut(s)	785, 878
AsuII	TTCGAA	1 cut(s)	997
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	2 cut(s)	699, 780
BbsI	GAAGAC	1 cut(s)	1149
BbvI	GCAGC	2 cut(s)	35, 85
BccI	CCATC	4 cut(s)	499, 587, 1046, 1094
BceAI	ACGGC	1 cut(s)	124
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	3 cut(s)	250, 818, 1139
BclI	TGATCA	1 cut(s)	1074
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	2 cut(s)	560, 832
BcuI	ACTAGT	1 cut(s)	979
BfaI	CTAG	3 cut(s)	722, 899, 980
BfmI	CTRYAG	1 cut(s)	466
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	5 cut(s)	24, 71, 74, 122, 240
BlsI	GCNGC	5 cut(s)	25, 72, 75, 123, 241
BmcAI	AGTACT	1 cut(s)	152
Bme1390I	CCNGG	4 cut(s)	250, 681, 818, 1139
BmeT110I	CYCGRG	2 cut(s)	699, 780
BmrFI	CCNGG	4 cut(s)	250, 681, 818, 1139
BmsI	GCATC	1 cut(s)	1006
BmtI	GCTAGC	1 cut(s)	725
BpiI	GAAGAC	1 cut(s)	1149
Bpu14I	TTCGAA	1 cut(s)	997
BpuEI	CTTGAG	2 cut(s)	383, 439
BpuMI	CCSGG	1 cut(s)	681
BsaBI	GATNNNNATC	2 cut(s)	163, 429
BsaHI	GRCGYC	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	249, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 249, 468, 823
Bse1I	ACTGG	2 cut(s)	158, 613
Bse3DI	GCAATG	1 cut(s)	234
Bse8I	GATNNNNATC	2 cut(s)	163, 429
BseBI	CCWGG	3 cut(s)	250, 818, 1139
BseDI	CCNNGG	2 cut(s)	249, 680
BseGI	GGATG	5 cut(s)	459, 510, 690, 1018, 1057
BseJI	GATNNNNATC	2 cut(s)	163, 429
BseLI	CCNNNNNNNGG	4 cut(s)	153, 249, 468, 823
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	3 cut(s)	1034, 1059, 1183
BseNI	ACTGG	2 cut(s)	158, 613
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	35, 85
BsgI	GTGCAG	1 cut(s)	960
Bsh1236I	CGCG	3 cut(s)	70, 115, 181
BshFI	GGCC	2 cut(s)	242, 316
BsiHKCI	CYCGRG	2 cut(s)	699, 780
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	2 cut(s)	188, 266
BslI	CCNNNNNNNGG	4 cut(s)	153, 249, 468, 823
BsmAI	GTCTC	2 cut(s)	560, 832
BsmFI	GGGAC	2 cut(s)	188, 266
BsmI	GAATGC	1 cut(s)	1114
BsnI	GGCC	2 cut(s)	242, 316
Bso31I	GGTCTC	1 cut(s)	832
BsoBI	CYCGRG	2 cut(s)	699, 780
Bsp119I	TTCGAA	1 cut(s)	997
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	164, 336, 895, 1074
BspACI	CCGC	9 cut(s)	70, 119, 122, 181, 239, 346, 501, 572, 882
BspANI	GGCC	2 cut(s)	242, 316
BspCNI	CTCAG	3 cut(s)	1033, 1060, 1182
BspFNI	CGCG	3 cut(s)	70, 115, 181
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	1 cut(s)	172
BspQI	GCTCTTC	1 cut(s)	950
BspT104I	TTCGAA	1 cut(s)	997
BspTNI	GGTCTC	1 cut(s)	832
BsrDI	GCAATG	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	158, 613
BssECI	CCNNGG	2 cut(s)	249, 680
BssMI	GATC	4 cut(s)	164, 336, 895, 1074
BssNI	GRCGYC	1 cut(s)	350
Bst2UI	CCWGG	3 cut(s)	250, 818, 1139
Bst4CI	ACNGT	3 cut(s)	9, 263, 467
Bst6I	CTCTTC	1 cut(s)	950
BstACI	GRCGYC	1 cut(s)	350
BstAUI	TGTACA	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	997
BstC8I	GCNNGC	5 cut(s)	113, 119, 348, 655, 723
BstDEI	CTNAG	4 cut(s)	311, 1020, 1068, 1169
BstF5I	GGATG	5 cut(s)	459, 510, 690, 1018, 1057
BstFNI	CGCG	3 cut(s)	70, 115, 181
BstHHI	GCGC	3 cut(s)	70, 117, 232
BstKTI	GATC	4 cut(s)	167, 339, 898, 1077
BstMAI	GTCTC	2 cut(s)	560, 832
BstMBI	GATC	4 cut(s)	164, 336, 895, 1074
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 236, 272, 731
BstNI	CCWGG	3 cut(s)	250, 818, 1139
BstNSI	RCATGY	3 cut(s)	601, 760, 799
BstSCI	CCNGG	4 cut(s)	248, 679, 816, 1137
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	3 cut(s)	70, 115, 181
BstV1I	GCAGC	2 cut(s)	35, 85
BstV2I	GAAGAC	1 cut(s)	1149
BstX2I	RGATCY	1 cut(s)	895
BstYI	RGATCY	1 cut(s)	895
BsuRI	GGCC	2 cut(s)	242, 316
BtgZI	GCGATG	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	459, 510, 690, 1018, 1057
BtsIMutI	CAGTG	2 cut(s)	268, 1177
Cac8I	GCNNGC	5 cut(s)	113, 119, 348, 655, 723
CfoI	GCGC	3 cut(s)	70, 117, 232
CseI	GACGC	1 cut(s)	339
Csp6I	GTAC	3 cut(s)	130, 151, 457
CviAII	CATG	8 cut(s)	392, 598, 695, 757, 796, 863, 1078, 1205
CviQI	GTAC	3 cut(s)	130, 151, 457
DdeI	CTNAG	4 cut(s)	311, 1020, 1068, 1169
DpnI	GATC	4 cut(s)	166, 338, 897, 1076
DpnII	GATC	4 cut(s)	164, 336, 895, 1074
Eam1104I	CTCTTC	1 cut(s)	950
EarI	CTCTTC	1 cut(s)	950
Eco31I	GGTCTC	1 cut(s)	832
Eco57I	CTGAAG	1 cut(s)	425
Eco88I	CYCGRG	2 cut(s)	699, 780
EcoRI	GAATTC	2 cut(s)	532, 742
EcoRII	CCWGG	3 cut(s)	248, 816, 1137
FaeI	CATG	8 cut(s)	395, 601, 698, 760, 799, 866, 1081, 1208
FaqI	GGGAC	2 cut(s)	188, 266
FatI	CATG	8 cut(s)	391, 597, 694, 756, 795, 862, 1077, 1204
FauI	CCCGC	3 cut(s)	126, 339, 494
FbaI	TGATCA	1 cut(s)	1074
Fnu4HI	GCNGC	5 cut(s)	24, 71, 74, 122, 240
FokI	GGATG	5 cut(s)	466, 517, 677, 1025, 1064
Fsp4HI	GCNGC	5 cut(s)	24, 71, 74, 122, 240
FspBI	CTAG	3 cut(s)	722, 899, 980
GlaI	GCGC	3 cut(s)	69, 116, 231
GluI	GCNGC	5 cut(s)	24, 71, 74, 122, 240
HaeIII	GGCC	2 cut(s)	242, 316
HapII	CCGG	1 cut(s)	680
HgaI	GACGC	1 cut(s)	339
HhaI	GCGC	3 cut(s)	70, 117, 232
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	8 cut(s)	395, 601, 698, 760, 799, 866, 1081, 1208
Hin6I	GCGC	3 cut(s)	68, 115, 230
HinP1I	GCGC	3 cut(s)	68, 115, 230
HinfI	GANTC	6 cut(s)	176, 254, 388, 479, 702, 1007
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	2 cut(s)	785, 878
Hpy188I	TCNGA	6 cut(s)	30, 405, 859, 1012, 1023, 1196
Hpy188III	TCNNGA	5 cut(s)	334, 362, 418, 646, 1089
Hpy99I	CGWCG	2 cut(s)	13, 110
HpyAV	CCTTC	3 cut(s)	569, 1018, 1042
HpyCH4III	ACNGT	3 cut(s)	9, 263, 467
HpyCH4V	TGCA	7 cut(s)	42, 657, 739, 765, 813, 977, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 236, 272, 731
HpyF3I	CTNAG	4 cut(s)	311, 1020, 1068, 1169
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	8 cut(s)	395, 601, 698, 760, 799, 866, 1081, 1208
HspAI	GCGC	3 cut(s)	68, 115, 230
Ksp22I	TGATCA	1 cut(s)	1074
Kzo9I	GATC	4 cut(s)	164, 336, 895, 1074
LguI	GCTCTTC	1 cut(s)	950
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	2 cut(s)	35, 85
LweI	GCATC	1 cut(s)	1006
MaeI	CTAG	3 cut(s)	722, 899, 980
MaeIII	GTNAC	4 cut(s)	49, 773, 918, 934
MalI	GATC	4 cut(s)	166, 338, 897, 1076
MboI	GATC	4 cut(s)	164, 336, 895, 1074
MboII	GAAGA	5 cut(s)	196, 425, 568, 967, 1154
MflI	RGATCY	1 cut(s)	895
MluCI	AATT	7 cut(s)	532, 550, 612, 626, 742, 766, 1113
MlyI	GAGTC	3 cut(s)	170, 248, 711
MmeI	TCCRAC	3 cut(s)	486, 930, 1219
MnlI	CCTC	7 cut(s)	55, 64, 98, 213, 358, 480, 597
MseI	TTAA	4 cut(s)	288, 665, 801, 1116
MslI	CAYNNNNRTG	1 cut(s)	867
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	4 cut(s)	250, 681, 818, 1139
Mva1269I	GAATGC	1 cut(s)	1114
MvaI	CCWGG	3 cut(s)	250, 818, 1139
MvnI	CGCG	3 cut(s)	70, 115, 181
MwoI	GCNNNNNNNGC	4 cut(s)	121, 236, 272, 731
NciI	CCSGG	1 cut(s)	681
NdeII	GATC	4 cut(s)	164, 336, 895, 1074
NheI	GCTAGC	1 cut(s)	721
NlaIII	CATG	8 cut(s)	395, 601, 698, 760, 799, 866, 1081, 1208
NmuCI	GTSAC	3 cut(s)	773, 918, 934
NspI	RCATGY	3 cut(s)	601, 760, 799
NspV	TTCGAA	1 cut(s)	997
PaeR7I	CTCGAG	1 cut(s)	780
PciI	ACATGT	1 cut(s)	756
PciSI	GCTCTTC	1 cut(s)	950
PcsI	WCGNNNNNNNCGW	1 cut(s)	332
PctI	GAATGC	1 cut(s)	1114
PfeI	GAWTC	3 cut(s)	388, 479, 1007
PflMI	CCANNNNNTGG	1 cut(s)	153
PkrI	GCNGC	5 cut(s)	25, 72, 75, 123, 241
PleI	GAGTC	3 cut(s)	170, 248, 710
PpsI	GAGTC	3 cut(s)	170, 248, 710
PscI	ACATGT	1 cut(s)	756
Psp6I	CCWGG	3 cut(s)	248, 816, 1137
PspGI	CCWGG	3 cut(s)	248, 816, 1137
PspXI	VCTCGAGB	1 cut(s)	780
PsuI	RGATCY	1 cut(s)	895
RsaI	GTAC	3 cut(s)	131, 152, 458
RsaNI	GTAC	3 cut(s)	130, 151, 457
RseI	CAYNNNNRTG	1 cut(s)	867
SapI	GCTCTTC	1 cut(s)	950
SaqAI	TTAA	4 cut(s)	288, 665, 801, 1116
SatI	GCNGC	5 cut(s)	24, 71, 74, 122, 240
Sau3AI	GATC	4 cut(s)	164, 336, 895, 1074
ScaI	AGTACT	1 cut(s)	152
SchI	GAGTC	3 cut(s)	170, 248, 711
ScrFI	CCNGG	4 cut(s)	250, 681, 818, 1139
SfaNI	GCATC	1 cut(s)	1006
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	780
SfuI	TTCGAA	1 cut(s)	997
SlaI	CTCGAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	1 cut(s)	867
SmlI	CTYRAG	3 cut(s)	362, 418, 780
SmoI	CTYRAG	3 cut(s)	362, 418, 780
SpeI	ACTAGT	1 cut(s)	979
Sse9I	AATT	7 cut(s)	532, 550, 612, 626, 742, 766, 1113
SsiI	CCGC	9 cut(s)	70, 119, 122, 181, 239, 346, 501, 572, 882
SspMI	CTAG	3 cut(s)	722, 899, 980
StyD4I	CCNGG	4 cut(s)	248, 679, 816, 1137
TaaI	ACNGT	3 cut(s)	9, 263, 467
TaqI	TCGA	4 cut(s)	326, 781, 997, 1088
TasI	AATT	7 cut(s)	532, 550, 612, 626, 742, 766, 1113
TatI	WGTACW	3 cut(s)	129, 150, 456
TauI	GCSGC	3 cut(s)	73, 124, 242
TfiI	GAWTC	3 cut(s)	388, 479, 1007
Tru1I	TTAA	4 cut(s)	288, 665, 801, 1116
Tru9I	TTAA	4 cut(s)	288, 665, 801, 1116
TscAI	CASTG	2 cut(s)	268, 1177
TseFI	GTSAC	3 cut(s)	773, 918, 934
TseI	GCWGC	2 cut(s)	23, 73
Tsp45I	GTSAC	3 cut(s)	773, 918, 934
TspDTI	ATGAA	3 cut(s)	210, 380, 1143
TspGWI	ACGGA	2 cut(s)	37, 942
TspRI	CASTG	2 cut(s)	268, 1177
Van91I	CCANNNNNTGG	1 cut(s)	153
XapI	RAATTY	3 cut(s)	532, 550, 742
XceI	RCATGY	3 cut(s)	601, 760, 799
XhoI	CTCGAG	1 cut(s)	780
XspI	CTAG	3 cut(s)	722, 899, 980
ZrmI	AGTACT	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.