Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

17853902 .. 17856110

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG102000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

ATGCCACCGTTGTGTGAACCCTCTCTAGTAGCGGCTTTAATACAAAAATGCACCGCCATAAACTCGCTCAGGGAAGCGCGTCGACTCCACGCGCTTCTCCTAACCACCACAACCGTCAGCTCGCGCTCTGTGTTCCTGTACAACAATGTGCTATCTATGTATGCACGGTGCGGCTCGCTAGGAGATGCACGCAAGGTGTTCGGCGAAATGCCTCAAAGAAGTCTTGTTTCGTACAATGCGCTGGCTGCAGCCCATTCCCGGAGTTCAGACACTGCCGGTTTGGCATTGACATTGCTAAAACAAATGGGAGTTGAATGTCTCAGGCCAAATGTTTCGACTTTCACGAGTGTGATACAAGCGTCATGTAATCTTGAGGATTGGTTGGTTGGCTCTTTGGTTCATGCACAAGTTGTGAAATGTGGGTTCTTGAATGAAGTGCATCTTCAGACAGCTCTGCTTGGGATGTATTCCAGCTGTGGGGATTTGGTATCTGCTAGCAGAGTTTTCGGAGGAATGCCTGGAATGGTTGATAGAGATGTTGTGGCTTGGAATTCGATGATTTTCGGGTATTTGAAGAATGGTAAGAACAAGGAAGGGCTTCATTTGTTTGATGGTATGTTGAGGACTGGAGTTATTCCTACTCAGTTCACATATTCAATGGTCTTGAATGTGTGTAGCAGATTGAGATATTTGAATCGGGGGGAAATCATCCATGCCCGAGTCATAGTTTCAAGCACACATGCTGATTTGGCTTTGGAGAATTCACTGCTTGATATGTATTGTAACTCTGGTGACACCCAAGTAGCTTTTAGTGTGTTTAATAAAATGGACAGCCCGGATTTGGTTTCATGGAACACAATGATTGCTGGGTATTCAGAAAATGAGGATGGGGAAAAGGCGATGAATTTGTTTGCCCGGTTGAAAAGATTGTGTTTTCTTAAACCAGATGAACATACTTATGCAGCTATCATATCTGCAGCAGGTACATACCTTGCTTCTGACTATGGTAAGCTTCTTCATGGTCAAGTCATAAAAGTAGGACTCGAGAAGAGTATATTTGTAGGAACTGCACTAGTGTCTATGTACTTCAAGAACAGCGAAACGGATAGTGCTCAAAAGGCATTTTATTCTATTTCTGAGAAGGATGTTGTTCTCTGGACTGAGATGATCATGGGTTATTCAAGATTGGCTAATGGGGAGAGTGCAATTAAGTTCTTCAAAGAAATGTGCAAGGAAAGCCATAAGGTTGACAGCTTTGCTCTGAGTGGAGCTTTGAGTGCTTGTTCCGACCTGGCCATGTTAAAACAAGGTGAGATGATTCACTCGCAGGCCTTAAAAACAGGATTTGATGTTGAAATGTCTGTATGCGGGAGTCTGGTGGATATGTATGCAAAAAACGGTTGCCTTGAATCTGCTTATTGTATATTTTCCCAAGTTGTGGAGCCTGATTTGAAATGTTGGAACTCGATGCTTGGGGGATATAGTCAACATGGCATGGCAGAAGAAGCATTGAAGCTCTTTTTTGAGATCCAAAAACATGGTCTCGTACCAGACCAAGTAACATTTCTGTCTCTACTCTCAGCTTGCAACCACAGTGGGTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGTATCCCACCTGGGCCTAAGCACTGCTCTTGCATGGTTAGTTTGTTAAGTCGAGCTCGACTACTGAATGAGGCAGAGGAACTTATTATCAAGTCACCATTTAACGAAGATAATCTTGTACTGTGGAGAACTTTGCTGAGCTCATGCGTCATCAATAAGAACTTGGAGATAGGAGTTCATGCAGCAGAGCATGTTCTAAAGGTTGATGCAGAAGACAGTGCAACACATATCTTGCTTTCAAATCTCTATGCTGCTGCCGGAAAATGGGATAAGGTTGTAGAAATAAGGAGAAAGACTAAAGAACTGACGTTAGAGAAGGATCCTGGGCTGAGCTGGATTGAGGATAAGAAGAATATTCAGGTATTCAGTTCTGGTGTTCAATCTAAGGAAGAGGTTGGTGAAGCCGAAGATGCACTGCATTGGCTACAAGGAAACATGGTACAATCTCAAAGAGATGAACTTGATGAACCTGTTTATACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

709

Amino Acids

78.23

Weight (kDa)

5.92

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	178 - 226	7.7e-13	PPR repeat family
PPR_2	PF13041	279 - 326	2.3e-09	PPR repeat family
PPR_2	PF13041	381 - 428	1.8e-06	PPR repeat family
PPR_2	PF13041	482 - 529	8.7e-11	PPR repeat family
PPR	PF01535	486 - 515	6.2e-08	PPR repeat
E_motif	PF20431	602 - 662	1.3e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	971
AccB7I	CCANNNNNTGG	1 cut(s)	1438
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	3 cut(s)	79, 92, 124
AciI	CCGC	4 cut(s)	32, 54, 171, 1368
AclWI	GGATC	3 cut(s)	1522, 1958, 1971
AcoI	YGGCCR	1 cut(s)	1293
AcsI	RAATTY	3 cut(s)	550, 760, 904
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	7 cut(s)	140, 233, 985, 1085, 1548, 1764, 2085
AfiI	CCNNNNNNNGG	5 cut(s)	258, 477, 841, 1438, 1908
AhlI	ACTAGT	1 cut(s)	1072
AjnI	CCWGG	4 cut(s)	517, 1290, 1654, 1966
AjuI	GAANNNNNNNTTGG	2 cut(s)	1548, 1580
AleI	CACNNNNGTG	2 cut(s)	10, 347
Alw21I	GWGCWC	3 cut(s)	1114, 1702, 1787
Alw26I	GTCTC	3 cut(s)	323, 1547, 1575
AlwI	GGATC	3 cut(s)	1522, 1958, 1971
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	717, 1043
AoxI	GGCC	4 cut(s)	323, 1293, 1329, 1658
ApeKI	GCWGC	7 cut(s)	245, 248, 962, 977, 1826, 1895, 1898
ApoI	RAATTY	3 cut(s)	550, 760, 904
ArsI	GACNNNNNNTTYG	2 cut(s)	1525, 1557
Asp700I	GAANNNNTTC	1 cut(s)	597
AspLEI	GCGC	4 cut(s)	79, 94, 126, 241
AspS9I	GGNCC	1 cut(s)	1658
AsuC2I	CCSGG	3 cut(s)	259, 836, 916
AsuHPI	GGTGA	4 cut(s)	803, 1322, 1731, 2054
AsuNHI	GCTAGC	1 cut(s)	494
AvaI	CYCGRG	2 cut(s)	717, 1043
BaeI	ACNNNNGTAYC	2 cut(s)	344, 377
BalI	TGGCCA	1 cut(s)	1295
BamHI	GGATCC	1 cut(s)	1963
BanII	GRGCYC	2 cut(s)	1702, 1787
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	1863
Bbv12I	GWGCWC	3 cut(s)	1114, 1702, 1787
BbvI	GCAGC	7 cut(s)	232, 260, 974, 989, 1838, 1882, 1885
BccI	CCATC	2 cut(s)	605, 881
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 487, 521
BciT130I	CCWGG	4 cut(s)	519, 1292, 1656, 1968
BciVI	GTATCC	1 cut(s)	1658
BclI	TGATCA	1 cut(s)	1167
BcnI	CCSGG	3 cut(s)	259, 836, 916
BcoDI	GTCTC	3 cut(s)	323, 1547, 1575
BcuI	ACTAGT	1 cut(s)	1072
BfaI	CTAG	4 cut(s)	26, 179, 495, 1073
BfmI	CTRYAG	2 cut(s)	246, 975
BfuAI	ACCTGC	1 cut(s)	971
BfuI	GTATCC	1 cut(s)	1658
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	9 cut(s)	33, 172, 246, 249, 963, 978, 1827, 1896, 1899
BlpI	GCTNAGC	2 cut(s)	1781, 1973
BlsI	GCNGC	9 cut(s)	34, 173, 247, 250, 964, 979, 1828, 1897, 1900
Bme1390I	CCNGG	7 cut(s)	259, 519, 836, 916, 1292, 1656, 1968
BmeT110I	CYCGRG	2 cut(s)	717, 1043
BmgT120I	GGNCC	1 cut(s)	1658
BmiI	GGNNCC	2 cut(s)	1443, 1965
BmrFI	CCNGG	7 cut(s)	259, 519, 836, 916, 1292, 1656, 1968
BmsI	GCATC	5 cut(s)	175, 448, 1458, 1840, 2044
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	1863
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	2 cut(s)	68, 1662
Bpu1102I	GCTNAGC	2 cut(s)	1781, 1973
BpuEI	CTTGAG	1 cut(s)	392
BpuMI	CCSGG	3 cut(s)	259, 836, 916
BsaI	GGTCTC	1 cut(s)	1547
BsaJI	CCNNGG	2 cut(s)	1655, 1967
Bsc4I	CCNNNNNNNGG	5 cut(s)	258, 477, 841, 1438, 1908
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	4 cut(s)	519, 1292, 1656, 1968
BseDI	CCNNGG	2 cut(s)	1655, 1967
BseGI	GGATG	4 cut(s)	468, 708, 892, 1150
BseLI	CCNNNNNNNGG	5 cut(s)	258, 477, 841, 1438, 1908
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	9 cut(s)	82, 334, 656, 1128, 1152, 1253, 1593, 1772, 1964
BseNI	ACTGG	1 cut(s)	631
BseXI	GCAGC	7 cut(s)	232, 260, 974, 989, 1838, 1882, 1885
BseYI	CCCAGC	1 cut(s)	866
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	3 cut(s)	79, 92, 124
BshFI	GGCC	4 cut(s)	325, 1295, 1331, 1660
BsiHKAI	GWGCWC	3 cut(s)	1114, 1702, 1787
BsiHKCI	CYCGRG	2 cut(s)	717, 1043
BsiSI	CCGG	5 cut(s)	259, 276, 836, 916, 1902
BslI	CCNNNNNNNGG	5 cut(s)	258, 477, 841, 1438, 1908
BsmAI	GTCTC	3 cut(s)	323, 1547, 1575
BsmI	GAATGC	1 cut(s)	519
BsnI	GGCC	4 cut(s)	325, 1295, 1331, 1660
Bso31I	GGTCTC	1 cut(s)	1547
BsoBI	CYCGRG	2 cut(s)	717, 1043
Bsp1286I	GDGCHC	3 cut(s)	1114, 1702, 1787
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	3 cut(s)	1167, 1527, 1963
Bsp1720I	GCTNAGC	2 cut(s)	1781, 1973
BspACI	CCGC	4 cut(s)	32, 54, 171, 1368
BspANI	GGCC	4 cut(s)	325, 1295, 1331, 1660
BspCNI	CTCAG	9 cut(s)	81, 333, 655, 1129, 1153, 1254, 1592, 1773, 1965
BspFNI	CGCG	3 cut(s)	79, 92, 124
BspLI	GGNNCC	2 cut(s)	1443, 1965
BspMAI	CTGCAG	2 cut(s)	250, 979
BspMI	ACCTGC	1 cut(s)	971
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	1522, 1958, 1971
BspTNI	GGTCTC	1 cut(s)	1547
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	1655, 1967
BssMI	GATC	3 cut(s)	1167, 1527, 1963
BssSI	CACGAG	1 cut(s)	343
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	4 cut(s)	519, 1292, 1656, 1968
Bst4CI	ACNGT	7 cut(s)	9, 115, 168, 1400, 1595, 1767, 1862
Bst6I	CTCTTC	2 cut(s)	1043, 2028
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	7 cut(s)	122, 176, 190, 243, 496, 1329, 1585
BstF5I	GGATG	4 cut(s)	468, 708, 892, 1150
BstFNI	CGCG	3 cut(s)	79, 92, 124
BstHHI	GCGC	4 cut(s)	79, 94, 126, 241
BstKTI	GATC	3 cut(s)	1170, 1530, 1966
BstMAI	GTCTC	3 cut(s)	323, 1547, 1575
BstMBI	GATC	3 cut(s)	1167, 1527, 1963
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 281, 749, 1118, 1236, 1277, 1505, 2054
BstNI	CCWGG	4 cut(s)	519, 1292, 1656, 1968
BstNSI	RCATGY	2 cut(s)	743, 1838
BstSCI	CCNGG	7 cut(s)	257, 517, 834, 914, 1290, 1654, 1966
BstSFI	CTRYAG	2 cut(s)	246, 975
BstUI	CGCG	3 cut(s)	79, 92, 124
BstV1I	GCAGC	7 cut(s)	232, 260, 974, 989, 1838, 1882, 1885
BstV2I	GAAGAC	1 cut(s)	1863
BstX2I	RGATCY	2 cut(s)	1527, 1963
BstXI	CCANNNNNNTGG	1 cut(s)	1538
BstYI	RGATCY	2 cut(s)	1527, 1963
BsuI	GTATCC	1 cut(s)	1658
BsuRI	GGCC	4 cut(s)	325, 1295, 1331, 1660
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	4 cut(s)	468, 708, 892, 1150
BtsI	GCAGTG	4 cut(s)	270, 764, 1666, 2057
BtsIMutI	CAGTG	6 cut(s)	270, 764, 1600, 1666, 1867, 2057
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	7 cut(s)	122, 176, 190, 243, 496, 1329, 1585
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	4 cut(s)	79, 94, 126, 241
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	1658
CseI	GACGC	3 cut(s)	68, 348, 1780
Csp6I	GTAC	7 cut(s)	139, 232, 984, 1084, 1547, 1763, 2084
CspCI	CAANNNNNGTGG	2 cut(s)	1576, 1611
CviQI	GTAC	7 cut(s)	139, 232, 984, 1084, 1547, 1763, 2084
DpnI	GATC	3 cut(s)	1169, 1529, 1965
DpnII	GATC	3 cut(s)	1167, 1527, 1963
EaeI	YGGCCR	1 cut(s)	1293
Eam1104I	CTCTTC	2 cut(s)	1043, 2028
EarI	CTCTTC	2 cut(s)	1043, 2028
Ecl136II	GAGCTC	2 cut(s)	1700, 1785
Eco147I	AGGCCT	1 cut(s)	1331
Eco24I	GRGCYC	2 cut(s)	1702, 1787
Eco31I	GGTCTC	1 cut(s)	1547
Eco53kI	GAGCTC	2 cut(s)	1700, 1785
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	717, 1043
EcoICRI	GAGCTC	2 cut(s)	1700, 1785
EcoRI	GAATTC	2 cut(s)	550, 760
EcoRII	CCWGG	4 cut(s)	517, 1290, 1654, 1966
EcoT38I	GRGCYC	2 cut(s)	1702, 1787
FalI	AAGNNNNNCTT	4 cut(s)	426, 458, 1743, 1775
FauI	CCCGC	1 cut(s)	1361
FbaI	TGATCA	1 cut(s)	1167
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	9 cut(s)	33, 172, 246, 249, 963, 978, 1827, 1896, 1899
FokI	GGATG	4 cut(s)	475, 695, 899, 1157
FriOI	GRGCYC	2 cut(s)	1702, 1787
Fsp4HI	GCNGC	9 cut(s)	33, 172, 246, 249, 963, 978, 1827, 1896, 1899
FspBI	CTAG	4 cut(s)	26, 179, 495, 1073
GlaI	GCGC	4 cut(s)	78, 93, 125, 240
GluI	GCNGC	9 cut(s)	33, 172, 246, 249, 963, 978, 1827, 1896, 1899
GsaI	CCCAGC	1 cut(s)	870
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	4 cut(s)	325, 1295, 1331, 1660
HapII	CCGG	5 cut(s)	259, 276, 836, 916, 1902
HgaI	GACGC	3 cut(s)	68, 348, 1780
HhaI	GCGC	4 cut(s)	79, 94, 126, 241
Hin6I	GCGC	4 cut(s)	77, 92, 124, 239
HinP1I	GCGC	4 cut(s)	77, 92, 124, 239
HincII	GTYRAC	3 cut(s)	83, 1249, 1487
HindII	GTYRAC	3 cut(s)	83, 1249, 1487
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	7 cut(s)	84, 694, 720, 1041, 1318, 1372, 1409
HpaII	CCGG	5 cut(s)	259, 276, 836, 916, 1902
HphI	GGTGA	4 cut(s)	803, 1322, 1731, 2054
Hpy166II	GTNNAC	5 cut(s)	17, 83, 648, 1249, 1487
Hpy188I	TCNGA	8 cut(s)	268, 447, 509, 877, 1000, 1138, 1263, 1288
Hpy188III	TCNNGA	8 cut(s)	343, 371, 427, 664, 1045, 1090, 1156, 1182
Hpy8I	GTNNAC	5 cut(s)	17, 83, 648, 1249, 1487
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	4 cut(s)	587, 1135, 1630, 1954
HpyCH4III	ACNGT	7 cut(s)	9, 115, 168, 1400, 1595, 1767, 1862
HpyCH4IV	ACGT	1 cut(s)	1952
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 281, 749, 1118, 1236, 1277, 1505, 2054
HpySE526I	ACGT	1 cut(s)	1952
HspAI	GCGC	4 cut(s)	77, 92, 124, 239
Ksp22I	TGATCA	1 cut(s)	1167
Kzo9I	GATC	3 cut(s)	1167, 1527, 1963
LmnI	GCTCC	2 cut(s)	1268, 1441
Lsp1109I	GCAGC	7 cut(s)	232, 260, 974, 989, 1838, 1882, 1885
LweI	GCATC	5 cut(s)	175, 448, 1458, 1840, 2044
MaeI	CTAG	4 cut(s)	26, 179, 495, 1073
MaeII	ACGT	1 cut(s)	1952
MaeIII	GTNAC	4 cut(s)	782, 791, 1558, 1737
MalI	GATC	3 cut(s)	1169, 1529, 1965
MboI	GATC	3 cut(s)	1167, 1527, 1963
MflI	RGATCY	2 cut(s)	1527, 1963
MhlI	GDGCHC	3 cut(s)	1114, 1702, 1787
MlsI	TGGCCA	1 cut(s)	1295
MluCI	AATT	5 cut(s)	550, 760, 904, 1206, 1627
MluNI	TGGCCA	1 cut(s)	1295
MlyI	GAGTC	4 cut(s)	78, 729, 1035, 1381
MmeI	TCCRAC	2 cut(s)	1311, 1439
Mox20I	TGGCCA	1 cut(s)	1295
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	1295
MseI	TTAA	8 cut(s)	38, 819, 939, 1209, 1301, 1334, 1691, 1746
MslI	CAYNNNNRTG	3 cut(s)	10, 347, 957
Msp20I	TGGCCA	1 cut(s)	1295
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	5 cut(s)	259, 276, 836, 916, 1902
MspR9I	CCNGG	7 cut(s)	259, 519, 836, 916, 1292, 1656, 1968
Mva1269I	GAATGC	1 cut(s)	519
MvaI	CCWGG	4 cut(s)	519, 1292, 1656, 1968
MvnI	CGCG	3 cut(s)	79, 92, 124
MwoI	GCNNNNNNNGC	8 cut(s)	245, 281, 749, 1118, 1236, 1277, 1505, 2054
NciI	CCSGG	3 cut(s)	259, 836, 916
NdeII	GATC	3 cut(s)	1167, 1527, 1963
NheI	GCTAGC	1 cut(s)	494
NlaIV	GGNNCC	2 cut(s)	1443, 1965
NmuCI	GTSAC	2 cut(s)	791, 1737
NspI	RCATGY	2 cut(s)	743, 1838
OliI	CACNNNNGTG	2 cut(s)	10, 347
PaeR7I	CTCGAG	1 cut(s)	1043
PceI	AGGCCT	1 cut(s)	1331
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PctI	GAATGC	1 cut(s)	519
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	3 cut(s)	694, 1318, 1409
PflMI	CCANNNNNTGG	1 cut(s)	1438
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	9 cut(s)	34, 173, 247, 250, 964, 979, 1828, 1897, 1900
PleI	GAGTC	4 cut(s)	78, 728, 1035, 1380
PpsI	GAGTC	4 cut(s)	78, 728, 1035, 1380
Psp124BI	GAGCTC	2 cut(s)	1702, 1787
Psp6I	CCWGG	4 cut(s)	517, 1290, 1654, 1966
PspFI	CCCAGC	1 cut(s)	866
PspGI	CCWGG	4 cut(s)	517, 1290, 1654, 1966
PspN4I	GGNNCC	2 cut(s)	1443, 1965
PspPI	GGNCC	1 cut(s)	1658
PstI	CTGCAG	2 cut(s)	250, 979
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	1527, 1963
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	7 cut(s)	140, 233, 985, 1085, 1548, 1764, 2085
RsaNI	GTAC	7 cut(s)	139, 232, 984, 1084, 1547, 1763, 2084
RseI	CAYNNNNRTG	3 cut(s)	10, 347, 957
SacI	GAGCTC	2 cut(s)	1702, 1787
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	8 cut(s)	38, 819, 939, 1209, 1301, 1334, 1691, 1746
SatI	GCNGC	9 cut(s)	33, 172, 246, 249, 963, 978, 1827, 1896, 1899
Sau3AI	GATC	3 cut(s)	1167, 1527, 1963
Sau96I	GGNCC	1 cut(s)	1658
SchI	GAGTC	4 cut(s)	78, 729, 1035, 1381
ScrFI	CCNGG	7 cut(s)	259, 519, 836, 916, 1292, 1656, 1968
SduI	GDGCHC	3 cut(s)	1114, 1702, 1787
SfaNI	GCATC	5 cut(s)	175, 448, 1458, 1840, 2044
SfcI	CTRYAG	2 cut(s)	246, 975
Sfr274I	CTCGAG	1 cut(s)	1043
SlaI	CTCGAG	1 cut(s)	1043
SmiMI	CAYNNNNRTG	3 cut(s)	10, 347, 957
SmlI	CTYRAG	2 cut(s)	371, 1043
SmoI	CTYRAG	2 cut(s)	371, 1043
SpeI	ACTAGT	1 cut(s)	1072
Sse9I	AATT	5 cut(s)	550, 760, 904, 1206, 1627
SseBI	AGGCCT	1 cut(s)	1331
SsiI	CCGC	4 cut(s)	32, 54, 171, 1368
SspI	AATATT	1 cut(s)	1999
SspMI	CTAG	4 cut(s)	26, 179, 495, 1073
SstI	GAGCTC	2 cut(s)	1702, 1787
StuI	AGGCCT	1 cut(s)	1331
StyD4I	CCNGG	7 cut(s)	257, 517, 834, 914, 1290, 1654, 1966
TaaI	ACNGT	7 cut(s)	9, 115, 168, 1400, 1595, 1767, 1862
TaiI	ACGT	1 cut(s)	1955
TaqI	TCGA	7 cut(s)	82, 335, 554, 1044, 1466, 1696, 1702
TasI	AATT	5 cut(s)	550, 760, 904, 1206, 1627
TatI	WGTACW	3 cut(s)	138, 1083, 1762
TauI	GCSGC	2 cut(s)	35, 174
TfiI	GAWTC	3 cut(s)	694, 1318, 1409
Tru1I	TTAA	8 cut(s)	38, 819, 939, 1209, 1301, 1334, 1691, 1746
Tru9I	TTAA	8 cut(s)	38, 819, 939, 1209, 1301, 1334, 1691, 1746
TscAI	CASTG	6 cut(s)	277, 771, 1600, 1673, 1867, 2064
TseFI	GTSAC	2 cut(s)	791, 1737
TseI	GCWGC	7 cut(s)	245, 248, 962, 977, 1826, 1895, 1898
Tsp45I	GTSAC	2 cut(s)	791, 1737
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	6 cut(s)	277, 771, 1600, 1673, 1867, 2064
Van91I	CCANNNNNTGG	1 cut(s)	1438
XapI	RAATTY	3 cut(s)	550, 760, 904
XceI	RCATGY	2 cut(s)	743, 1838
XhoI	CTCGAG	1 cut(s)	1043
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	4 cut(s)	26, 179, 495, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.