Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

14602924 .. 14605044

Gene Structure 2121 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGCCACCGTTGTGTGAACCCTCTCTAGTAGCGGCTTTAATACAGAAATGCACCGCCATAAACTCGCTCAGGGAAGCGCGTCGACTCCACGCGCTTCTCCTAACCACCACAACCGTCGCCTCTCGCTCTGTGTTCCTATATAACAATGTGCTATCTATGTATGCGCGGTGCAGCTCGCTCGGAGATGCATGCAAGGTGTTCGACGAAATGCCTCAAAGAAGTCTTGTTTCGTTCAACGCGCTGGCTGCAGCCTATTCCCGGAGTTCAGACACTGCCGGTTTTGCATTGACATTGCTAAAACAAATGGGAGTTGAATGTATCAGGCCAAATGTTTCGACTTTCACGAGTGTGATACAAGCCTCATGTACTCTTGAGGATTGGTTGGTTGGCTCTTTGGTTCATGCACAAGTTGTGAAATGTGGGTTCTTGAATGATGTGTATCTTCAGACAGCTCTGCTTGGGATGTATTCCAGCTGTGGGGATTTGGTATCTGCTAGCAGAGTTTTTGGAGGAATGGTTGATAGAGATGTTGTGGCTTGGAATTCGATGATTTTCGGGTATTTGAAGAATGGTAAGAACAAGGAAGGGCTTCATTTGTTTGATGGTATGTTGAGGACTGGAGTTATTCCTACTCGGTTCACATATTCAATGGTTTTGAATGTGTGTAGCAGATTGAGATATTTGAATCTGGGGAAAATCATCCATGCCCGAGTCATAGTTTCAAGCACACAAGCTGATTTGGCTTTGGAGAATTCACTGCTTGATATGTATTGTAACTCTGGTGACACCCAAGCAGCTTTTAATGTGTTTAATAAAATGGACAACCCGGATTTGGTTTCATGGAACACAATGATTGCTGGGTATTCAGAAAATGAGGATGGGGAGAAGGCGATGAATTTGTTTGCCCGGTTGAAAAGATTGTGTTATCTTAAACCAGATGAATATACTTATGCAGCTATCATATCTGCGGCAGGTACATACCTTGCTTCTGACTATGGTAAGCTTCTTCATGCTCAAGTCATAAAAGTAGGACTCGAGAAGAGTATCTTTGTAGGAACTGCACTAGTGTCTTTGTACTTCAAGAACAGCAAAACGGATATTGCTGAAAAGGCATTTTATTGCATTTCGGAGAAGGATGTTGTTCTCTGGACTCAGATGATCATGGGTTATTCGAGATTGTCTGACGGGGAGAGTGCAATCAATTTCTTTAAAGAAATGTGCAAGGAAGGCAATAAGTTTGACAGCTTTGCCCTCAGTGGAGCTCTGAGTGCTTGTTCCGACCTTGCCATGTTAAAACAAGGTGAGATGATTCACTCGCAGGCCTTAAAAACAGGATTTGATGTTGAAATGTCTGTATGTGGGAGTCTGGTGGATATGTATGGAAAAAACGGTTGCCTTGAATCTGCTTATTGTATATTTTCCCAAGTTTTGGACCCTGATTTAAAATGTTGGAACTCAATGCTTGGCGGATATAGTCACCATGGCATGGCAGAAGAAGCATTGAAGCTCTTTTTTGAGATCCAAAAACATGGTCTCGTACCAGACCAAGTAACATTTCTATCTCTACTCTCAGCTTGCAACCACAGTGGGTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGTATCCCACCCGGGCCTAAGCACTACTCTTGCATGGTTAGTTTGTTAAGTCGAGCTCAACTACTGAATGAGGCAGACGAACTTATTATCAAGTCACCATTTAATGAAGATAATCTTGAACTGTGGAGAACTTTGCTGAGCTCGTGCGTCATCAATAAGAACTTGGAGATAGGAGTTCATGCAGCAGAGCAGGTTCTAAGGGTTGATGCAGAAGACAGTGCAACACATATCTTGCTTTCAAATCTCTATGCTGCTGCCGGAAAATGGGATAAGGTTGTAGAAACAAGGAGAAAGATTAAAGAACTGACGTTAGAGAAGGATCCTGGGCTGAGCTGGATTGAGGATAAGAAGAATATTCAAGTATTCAGTTCTGGTGTTCAATCCAAGGAAGACGTTGGTGAAGCCGAAGCTGCACTGCATCAGCTACAAGGAAACATGGTAAAATCTCAAAGAGATGAACTTGATGAACCTATTTATACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

707

Amino Acids

78.04

Weight (kDa)

5.71

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	175 - 223	1.3e-12	PPR repeat family
PPR_2	PF13041	276 - 323	6.9e-10	PPR repeat family
PPR_2	PF13041	378 - 425	1.9e-06	PPR repeat family
PPR_2	PF13041	479 - 526	1.3e-10	PPR repeat family
PPR	PF01535	483 - 512	1.3e-07	PPR repeat
E_motif	PF20431	599 - 659	2.7e-15	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	962, 1816
AccB7I	CCANNNNNTGG	2 cut(s)	1429, 1486
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	4 cut(s)	79, 92, 166, 239
AciI	CCGC	5 cut(s)	32, 54, 166, 968, 1467
AclWI	GGATC	3 cut(s)	1513, 1949, 1962
AcsI	RAATTY	3 cut(s)	541, 751, 895
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	4 cut(s)	367, 976, 1076, 1539
AfiI	CCNNNNNNNGG	6 cut(s)	258, 477, 832, 1429, 1486, 1899
AhlI	ACTAGT	1 cut(s)	1063
AjnI	CCWGG	1 cut(s)	1957
AjuI	GAANNNNNNNTTGG	2 cut(s)	1539, 1571
AleI	CACNNNNGTG	2 cut(s)	10, 347
Alw21I	GWGCWC	3 cut(s)	1264, 1693, 1778
Alw26I	GTCTC	1 cut(s)	1538
AlwI	GGATC	3 cut(s)	1513, 1949, 1962
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	3 cut(s)	708, 1034, 1646
AoxI	GGCC	3 cut(s)	323, 1320, 1649
ApeKI	GCWGC	9 cut(s)	171, 245, 248, 794, 953, 1817, 1886, 1889, 2045
ApoI	RAATTY	3 cut(s)	541, 751, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	1516, 1548
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	4 cut(s)	79, 94, 166, 241
AspS9I	GGNCC	2 cut(s)	1432, 1649
AsuC2I	CCSGG	5 cut(s)	259, 827, 907, 1647, 1648
AsuHPI	GGTGA	5 cut(s)	794, 1313, 1469, 1722, 2045
AsuNHI	GCTAGC	1 cut(s)	494
AvaI	CYCGRG	3 cut(s)	708, 1034, 1646
AvaII	GGWCC	1 cut(s)	1432
BamHI	GGATCC	1 cut(s)	1954
BanII	GRGCYC	3 cut(s)	1264, 1693, 1778
BauI	CACGAG	2 cut(s)	343, 1777
BbsI	GAAGAC	2 cut(s)	1854, 2031
Bbv12I	GWGCWC	3 cut(s)	1264, 1693, 1778
BbvI	GCAGC	9 cut(s)	183, 232, 260, 806, 965, 1829, 1873, 1876, 2032
BccI	CCATC	2 cut(s)	596, 872
BcgI	CGANNNNNNTGC	4 cut(s)	160, 181, 194, 215
BciT130I	CCWGG	1 cut(s)	1959
BciVI	GTATCC	1 cut(s)	1649
BclI	TGATCA	1 cut(s)	1158
BcnI	CCSGG	5 cut(s)	259, 827, 907, 1647, 1648
BcoDI	GTCTC	1 cut(s)	1538
BcuI	ACTAGT	1 cut(s)	1063
BfaI	CTAG	3 cut(s)	26, 495, 1064
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	962, 1816
BfuI	GTATCC	1 cut(s)	1649
BlpI	GCTNAGC	2 cut(s)	1772, 1964
Bme1390I	CCNGG	6 cut(s)	259, 827, 907, 1647, 1648, 1959
Bme18I	GGWCC	1 cut(s)	1432
BmeT110I	CYCGRG	3 cut(s)	708, 1034, 1646
BmgT120I	GGNCC	2 cut(s)	1432, 1649
BmiI	GGNNCC	2 cut(s)	1434, 1956
BmrFI	CCNGG	6 cut(s)	259, 827, 907, 1647, 1648, 1959
BmsI	GCATC	3 cut(s)	175, 1831, 2062
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	1854, 2031
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	68, 1653
Bpu1102I	GCTNAGC	2 cut(s)	1772, 1964
BpuEI	CTTGAG	2 cut(s)	392, 999
BpuMI	CCSGG	5 cut(s)	259, 827, 907, 1647, 1648
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	1538
BsaJI	CCNNGG	4 cut(s)	1480, 1646, 1958, 2019
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	6 cut(s)	258, 477, 832, 1429, 1486, 1899
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	1959
BseDI	CCNNGG	4 cut(s)	1480, 1646, 1958, 2019
BseGI	GGATG	4 cut(s)	468, 699, 883, 1141
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	6 cut(s)	258, 477, 832, 1429, 1486, 1899
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	7 cut(s)	82, 1166, 1256, 1267, 1584, 1763, 1955
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	9 cut(s)	183, 232, 260, 806, 965, 1829, 1873, 1876, 2032
BseYI	CCCAGC	1 cut(s)	857
BsgI	GTGCAG	3 cut(s)	190, 1044, 2031
Bsh1236I	CGCG	4 cut(s)	79, 92, 166, 239
BshFI	GGCC	3 cut(s)	325, 1322, 1651
BsiHKAI	GWGCWC	3 cut(s)	1264, 1693, 1778
BsiHKCI	CYCGRG	3 cut(s)	708, 1034, 1646
BsiSI	CCGG	6 cut(s)	259, 276, 827, 907, 1647, 1893
BslI	CCNNNNNNNGG	6 cut(s)	258, 477, 832, 1429, 1486, 1899
BsmAI	GTCTC	1 cut(s)	1538
BsnI	GGCC	3 cut(s)	325, 1322, 1651
Bso31I	GGTCTC	1 cut(s)	1538
BsoBI	CYCGRG	3 cut(s)	708, 1034, 1646
Bsp1286I	GDGCHC	3 cut(s)	1264, 1693, 1778
Bsp143I	GATC	3 cut(s)	1158, 1518, 1954
Bsp1720I	GCTNAGC	2 cut(s)	1772, 1964
Bsp19I	CCATGG	1 cut(s)	1480
BspACI	CCGC	5 cut(s)	32, 54, 166, 968, 1467
BspANI	GGCC	3 cut(s)	325, 1322, 1651
BspCNI	CTCAG	7 cut(s)	81, 1165, 1257, 1266, 1583, 1764, 1956
BspFNI	CGCG	4 cut(s)	79, 92, 166, 239
BspLI	GGNNCC	2 cut(s)	1434, 1956
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	962, 1816
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	1513, 1949, 1962
BspTNI	GGTCTC	1 cut(s)	1538
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	4 cut(s)	1480, 1646, 1958, 2019
BssMI	GATC	3 cut(s)	1158, 1518, 1954
BssSI	CACGAG	2 cut(s)	343, 1777
BssT1I	CCWWGG	2 cut(s)	1480, 2019
Bst2BI	CACGAG	2 cut(s)	343, 1777
Bst2UI	CCWGG	1 cut(s)	1959
Bst4CI	ACNGT	6 cut(s)	9, 115, 1391, 1586, 1758, 1853
Bst6I	CTCTTC	1 cut(s)	1034
BstC8I	GCNNGC	6 cut(s)	176, 190, 243, 496, 1320, 1576
BstDEI	CTNAG	9 cut(s)	68, 1152, 1253, 1265, 1570, 1653, 1772, 1832, 1964
BstDSI	CCRYGG	1 cut(s)	1480
BstF5I	GGATG	4 cut(s)	468, 699, 883, 1141
BstFNI	CGCG	4 cut(s)	79, 92, 166, 239
BstHHI	GCGC	4 cut(s)	79, 94, 166, 241
BstKTI	GATC	3 cut(s)	1161, 1521, 1957
BstMAI	GTCTC	1 cut(s)	1538
BstMBI	GATC	3 cut(s)	1158, 1518, 1954
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1109, 1227, 1268, 1496, 2045
BstNI	CCWGG	1 cut(s)	1959
BstNSI	RCATGY	1 cut(s)	192
BstSCI	CCNGG	6 cut(s)	257, 825, 905, 1645, 1646, 1957
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	4 cut(s)	79, 92, 166, 239
BstV1I	GCAGC	9 cut(s)	183, 232, 260, 806, 965, 1829, 1873, 1876, 2032
BstV2I	GAAGAC	2 cut(s)	1854, 2031
BstX2I	RGATCY	2 cut(s)	1518, 1954
BstXI	CCANNNNNNTGG	1 cut(s)	1529
BstYI	RGATCY	2 cut(s)	1518, 1954
BsuI	GTATCC	1 cut(s)	1649
BsuRI	GGCC	3 cut(s)	325, 1322, 1651
BtgI	CCRYGG	1 cut(s)	1480
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	4 cut(s)	468, 699, 883, 1141
BtsI	GCAGTG	3 cut(s)	270, 755, 2048
BtsIMutI	CAGTG	6 cut(s)	270, 755, 1261, 1591, 1858, 2048
BveI	ACCTGC	2 cut(s)	962, 1816
Cac8I	GCNNGC	6 cut(s)	176, 190, 243, 496, 1320, 1576
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	4 cut(s)	79, 94, 166, 241
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	2 cut(s)	1432, 1649
Cfr9I	CCCGGG	1 cut(s)	1646
CseI	GACGC	2 cut(s)	68, 1771
Csp6I	GTAC	4 cut(s)	366, 975, 1075, 1538
CspCI	CAANNNNNGTGG	2 cut(s)	1567, 1602
CviQI	GTAC	4 cut(s)	366, 975, 1075, 1538
DdeI	CTNAG	9 cut(s)	68, 1152, 1253, 1265, 1570, 1653, 1772, 1832, 1964
DpnI	GATC	3 cut(s)	1160, 1520, 1956
DpnII	GATC	3 cut(s)	1158, 1518, 1954
DraI	TTTAAA	2 cut(s)	1210, 1443
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
EciI	GGCGGA	1 cut(s)	1482
Ecl136II	GAGCTC	3 cut(s)	1262, 1691, 1776
Eco130I	CCWWGG	2 cut(s)	1480, 2019
Eco147I	AGGCCT	1 cut(s)	1322
Eco24I	GRGCYC	3 cut(s)	1264, 1693, 1778
Eco31I	GGTCTC	1 cut(s)	1538
Eco47I	GGWCC	1 cut(s)	1432
Eco53kI	GAGCTC	3 cut(s)	1262, 1691, 1776
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	3 cut(s)	708, 1034, 1646
EcoICRI	GAGCTC	3 cut(s)	1262, 1691, 1776
EcoRI	GAATTC	2 cut(s)	541, 751
EcoRII	CCWGG	1 cut(s)	1957
EcoT14I	CCWWGG	2 cut(s)	1480, 2019
EcoT22I	ATGCAT	1 cut(s)	190
EcoT38I	GRGCYC	3 cut(s)	1264, 1693, 1778
ErhI	CCWWGG	2 cut(s)	1480, 2019
FalI	AAGNNNNNCTT	4 cut(s)	1031, 1063, 1734, 1766
FbaI	TGATCA	1 cut(s)	1158
FblI	GTMKAC	1 cut(s)	82
FokI	GGATG	4 cut(s)	475, 686, 890, 1148
FriOI	GRGCYC	3 cut(s)	1264, 1693, 1778
FspBI	CTAG	3 cut(s)	26, 495, 1064
GlaI	GCGC	4 cut(s)	78, 93, 165, 240
GsaI	CCCAGC	1 cut(s)	861
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	3 cut(s)	325, 1322, 1651
HapII	CCGG	6 cut(s)	259, 276, 827, 907, 1647, 1893
HgaI	GACGC	2 cut(s)	68, 1771
HhaI	GCGC	4 cut(s)	79, 94, 166, 241
Hin6I	GCGC	4 cut(s)	77, 92, 164, 239
HinP1I	GCGC	4 cut(s)	77, 92, 164, 239
HincII	GTYRAC	1 cut(s)	83
HindII	GTYRAC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	8 cut(s)	84, 685, 711, 1032, 1150, 1309, 1363, 1400
HpaII	CCGG	6 cut(s)	259, 276, 827, 907, 1647, 1893
HphI	GGTGA	5 cut(s)	794, 1313, 1469, 1722, 2045
Hpy166II	GTNNAC	3 cut(s)	17, 83, 639
Hpy188III	TCNNGA	8 cut(s)	343, 371, 427, 1036, 1081, 1147, 1173, 1751
Hpy8I	GTNNAC	3 cut(s)	17, 83, 639
Hpy99I	CGWCG	3 cut(s)	84, 119, 206
HpyAV	CCTTC	6 cut(s)	578, 880, 1126, 1220, 1621, 1945
HpyCH4III	ACNGT	6 cut(s)	9, 115, 1391, 1586, 1758, 1853
HpyCH4IV	ACGT	2 cut(s)	1943, 2028
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1109, 1227, 1268, 1496, 2045
HpyF3I	CTNAG	9 cut(s)	68, 1152, 1253, 1265, 1570, 1653, 1772, 1832, 1964
HpySE526I	ACGT	2 cut(s)	1943, 2028
HspAI	GCGC	4 cut(s)	77, 92, 164, 239
Ksp22I	TGATCA	1 cut(s)	1158
Kzo9I	GATC	3 cut(s)	1158, 1518, 1954
LmnI	GCTCC	1 cut(s)	1259
Lsp1109I	GCAGC	9 cut(s)	183, 232, 260, 806, 965, 1829, 1873, 1876, 2032
LweI	GCATC	3 cut(s)	175, 1831, 2062
MaeI	CTAG	3 cut(s)	26, 495, 1064
MaeII	ACGT	2 cut(s)	1943, 2028
MaeIII	GTNAC	5 cut(s)	773, 782, 1475, 1549, 1728
MalI	GATC	3 cut(s)	1160, 1520, 1956
MboI	GATC	3 cut(s)	1158, 1518, 1954
MboII	GAAGA	9 cut(s)	434, 577, 998, 1051, 1505, 1754, 1859, 1996, 2036
MflI	RGATCY	2 cut(s)	1518, 1954
MhlI	GDGCHC	3 cut(s)	1264, 1693, 1778
MluCI	AATT	5 cut(s)	541, 751, 895, 1201, 1618
MlyI	GAGTC	5 cut(s)	78, 720, 1026, 1144, 1372
MmeI	TCCRAC	2 cut(s)	1302, 1430
Mph1103I	ATGCAT	1 cut(s)	190
MroXI	GAANNNNTTC	1 cut(s)	588
MslI	CAYNNNNRTG	2 cut(s)	10, 347
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	6 cut(s)	259, 276, 827, 907, 1647, 1893
MspR9I	CCNGG	6 cut(s)	259, 827, 907, 1647, 1648, 1959
MvaI	CCWGG	1 cut(s)	1959
MvnI	CGCG	4 cut(s)	79, 92, 166, 239
MwoI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1109, 1227, 1268, 1496, 2045
NciI	CCSGG	5 cut(s)	259, 827, 907, 1647, 1648
NcoI	CCATGG	1 cut(s)	1480
NdeII	GATC	3 cut(s)	1158, 1518, 1954
NheI	GCTAGC	1 cut(s)	494
NlaIV	GGNNCC	2 cut(s)	1434, 1956
NmuCI	GTSAC	3 cut(s)	782, 1475, 1728
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	192
OliI	CACNNNNGTG	2 cut(s)	10, 347
PaeI	GCATGC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	1034
PceI	AGGCCT	1 cut(s)	1322
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	3 cut(s)	685, 1309, 1400
PflMI	CCANNNNNTGG	2 cut(s)	1429, 1486
PfoI	TCCNGGA	1 cut(s)	257
PleI	GAGTC	5 cut(s)	78, 719, 1026, 1144, 1371
PpsI	GAGTC	5 cut(s)	78, 719, 1026, 1144, 1371
Psp124BI	GAGCTC	3 cut(s)	1264, 1693, 1778
Psp6I	CCWGG	1 cut(s)	1957
PspFI	CCCAGC	1 cut(s)	857
PspGI	CCWGG	1 cut(s)	1957
PspN4I	GGNNCC	2 cut(s)	1434, 1956
PspPI	GGNCC	2 cut(s)	1432, 1649
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	2 cut(s)	1518, 1954
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	4 cut(s)	367, 976, 1076, 1539
RsaNI	GTAC	4 cut(s)	366, 975, 1075, 1538
RseI	CAYNNNNRTG	2 cut(s)	10, 347
SacI	GAGCTC	3 cut(s)	1264, 1693, 1778
SalI	GTCGAC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	1158, 1518, 1954
Sau96I	GGNCC	2 cut(s)	1432, 1649
SchI	GAGTC	5 cut(s)	78, 720, 1026, 1144, 1372
ScrFI	CCNGG	6 cut(s)	259, 827, 907, 1647, 1648, 1959
SduI	GDGCHC	3 cut(s)	1264, 1693, 1778
SfaNI	GCATC	3 cut(s)	175, 1831, 2062
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	1034
SinI	GGWCC	1 cut(s)	1432
SlaI	CTCGAG	1 cut(s)	1034
SmaI	CCCGGG	1 cut(s)	1648
SmiMI	CAYNNNNRTG	2 cut(s)	10, 347
SmlI	CTYRAG	3 cut(s)	371, 1014, 1034
SmoI	CTYRAG	3 cut(s)	371, 1014, 1034
SpeI	ACTAGT	1 cut(s)	1063
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	5 cut(s)	541, 751, 895, 1201, 1618
SseBI	AGGCCT	1 cut(s)	1322
SsiI	CCGC	5 cut(s)	32, 54, 166, 968, 1467
SspI	AATATT	1 cut(s)	1990
SspMI	CTAG	3 cut(s)	26, 495, 1064
SstI	GAGCTC	3 cut(s)	1264, 1693, 1778
StuI	AGGCCT	1 cut(s)	1322
StyD4I	CCNGG	6 cut(s)	257, 825, 905, 1645, 1646, 1957
StyI	CCWWGG	2 cut(s)	1480, 2019
TaaI	ACNGT	6 cut(s)	9, 115, 1391, 1586, 1758, 1853
TaiI	ACGT	2 cut(s)	1946, 2031
TaqI	TCGA	7 cut(s)	82, 201, 335, 545, 1035, 1172, 1687
TasI	AATT	5 cut(s)	541, 751, 895, 1201, 1618
TatI	WGTACW	2 cut(s)	365, 1074
TauI	GCSGC	2 cut(s)	35, 971
TfiI	GAWTC	3 cut(s)	685, 1309, 1400
TscAI	CASTG	6 cut(s)	277, 762, 1261, 1591, 1858, 2055
TseFI	GTSAC	3 cut(s)	782, 1475, 1728
TseI	GCWGC	9 cut(s)	171, 245, 248, 794, 953, 1817, 1886, 1889, 2045
Tsp45I	GTSAC	3 cut(s)	782, 1475, 1728
TspGWI	ACGGA	1 cut(s)	1109
TspMI	CCCGGG	1 cut(s)	1646
TspRI	CASTG	6 cut(s)	277, 762, 1261, 1591, 1858, 2055
Van91I	CCANNNNNTGG	2 cut(s)	1429, 1486
VpaK11BI	GGWCC	1 cut(s)	1432
XapI	RAATTY	3 cut(s)	541, 751, 895
XceI	RCATGY	1 cut(s)	192
XhoI	CTCGAG	1 cut(s)	1034
XmaI	CCCGGG	1 cut(s)	1646
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	3 cut(s)	26, 495, 1064
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.