Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00256

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Forward (+)

36149 .. 38336

Gene Structure 2188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGCCACCGTTGTGTGAACCCTCTCTGGTAGCGGCTTTAATACAAAAATGCACCTTCATAAACTCGCTCAGGGAAGCGCGTCGACTCCACGCGCTTCTCCTAACCACCACAACCGTCGCCTCGCGCTCGGTGTTCCTGTACAACAATGTGCTATCTATGTATGCACGGTGCGGCTCGCTGGGAGATGCACGCAAGGTGTTCGACGAAATGCCTCAAAGAAGTCTTGTTTCGTTCAATGCGCTGGCTGCAGCCTATTCCCGGAGTTCAGACACTGCCGGTTTGGCATTGACATTGCTAAAACAAATGGGAGTTGAATGTCTCAGGCCAAATGTTTCGACTTTCACGAGTGTGATACAAGCCTCATGTACTCTTGAGGATTGGTTGGTTGGCTCTTTGGTTCATGCACAAGTTGTGAAATGTGGATTCTTGAATGATGTGTATCTTCAGACAGCTCTGCTTGGGATGTATTCCAGCTGTGGGGATTTGGTATCTGCTAGCAGAGTTTTCGGAGGAATGGTTGATAGAGATGCTGTGGCTTGGAATTCGATGATTTTCGGGTATTTGAAGAATGGTAAGAACAAGGAAGGGCTTCATTTGTTTGATGCTATGTTGAGGACTGGAGTTATTCCTACTCAGTTCACATATTCAATGGTTTTGAATGTGTGTAGCAGATTGAGATATTTGAATCTGGGGAAAATCATCCATGCCCGAGTCATAGTTTCAAGCACACAAGCTGATTTGGCTTTGGAGAATTCACTGCTTGATATGTATTGTAACTCTGGTGACACCCAAGCAGCTTTTAGTGTGTTTAATAAAATGGACAGCCCGGATTTGGTTTCATGGAACACAATGATTGCTGGGTATTCAGAAAATGAGGATGGGGAGAAGGCGATGAATTTGTTTGCCCGGTTGAAAAGATTGTGTTATCTTAAACCAGATGAATATACTTATGCAGCAGGTACATACCTTGCTTCTGACTATGGTAAGCTTCTTCATGCTCAAGTCATAAAAGTAGGACTCGAGAAGAGTATATTTGTAGGAACTGCACTAGTGTCTATGTACTTCAAGAACAGCGAAACGGATAGTGCTCAAAAGGCATTTTATTCTATTTCTGAGAAGGATGTTGTTCTCTGGACTGAGATGATCATGGGTTATTCGAGATTGGCTGATGGGGAGAGTGCAATTAAGTTCTTCAAAGAAATGTGCAAGGAAAGCCATAAGGTTGACAGCTTTGCTCTGAGTGGAGCTTTGAGTGCTTGTTCCGACCTGGCCATGTTAAAACAAGGTGAGATGATTCACTTGCAGGCCTTAAAAACAGGATTTGATGTTGAAATGTCTGTGTGCGGGAGTCTGGTGGATATGTATGCAAAAAACGGTTGCCTTGAATCTGCTTATTGTATATTTTCTCAAGTTGTGGAGCCTGATTTGAAATGTTGGAACTCGATGCTTGGGGGATATAGTCAACATGGCATGGCAGAAGAAGCATTGAAGCTCTTTTTTGAGATCCAAAAACATGGTCTCGTACCAGACCAAGTAACATTTCTGTCTCTACTCTCAGCTTGCAACCACAGTGGGTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGTATCCCACCTGGGCCTAAGCACTGCTCTTGCATGGTTAGTTTGTTAAGTCGAGCTCGACTACTGAATGAGGCAGAGGAACTTATTATCAAGTCACCATTTAATGAAGACAATCTTGAACTGTGGAGAACTTTGCTGAGCTCGTGCGTCATCCATAAGAACTTGGAGATAGGAGTTCATGCAGCAGAGCAGGTTCTAAAGGTTGATGCAGAAGACAGTGCAACACATATCTTGCTTTCAAATCTCTATGCTGCTGCCGGAAAATGGGATAAGGTTGTAGAAATAAGGAGAAAGATTAAAGAACTGACGTTAGAGAAGGATCCTGGGCTGAGCTGGATTGAGGATAAGAAGAATATTCAGGTATTCAGTTCTGGTGTTCAATCTAAGGAAGAGGTTGGTGAAGCCAAAGATGCACTGCATTGGCTACAAGGAAACATGGTAAGATCTCAAAGAGATGAACTTGATGAACCTATTTATACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

701

Amino Acids

77.7

Weight (kDa)

5.83

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	176 - 223	1.4e-12	PPR repeat family
PPR	PF01535	178 - 207	1e-05	PPR repeat
PPR_2	PF13041	276 - 317	1.1e-08	PPR repeat family
PPR_2	PF13041	373 - 420	1.5e-06	PPR repeat family
PPR_2	PF13041	474 - 521	8.6e-11	PPR repeat family
PPR	PF01535	478 - 507	6.1e-08	PPR repeat
E_motif	PF20431	592 - 654	4.5e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	947, 1801
AccI	GTMKAC	1 cut(s)	82
AccII	CGCG	3 cut(s)	79, 92, 124
AciI	CCGC	3 cut(s)	32, 171, 1344
AclWI	GGATC	3 cut(s)	1498, 1934, 1947
AcoI	YGGCCR	1 cut(s)	1269
AcsI	RAATTY	3 cut(s)	541, 751, 895
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	5 cut(s)	140, 367, 961, 1061, 1524
AfiI	CCNNNNNNNGG	4 cut(s)	258, 477, 832, 1884
AhlI	ACTAGT	1 cut(s)	1048
AjnI	CCWGG	3 cut(s)	1266, 1630, 1942
AjuI	GAANNNNNNNTTGG	2 cut(s)	1524, 1556
AleI	CACNNNNGTG	2 cut(s)	10, 347
Alw21I	GWGCWC	3 cut(s)	1090, 1678, 1763
Alw26I	GTCTC	3 cut(s)	323, 1523, 1551
AlwI	GGATC	3 cut(s)	1498, 1934, 1947
AlwNI	CAGNNNCTG	1 cut(s)	272
Ama87I	CYCGRG	2 cut(s)	708, 1019
AoxI	GGCC	4 cut(s)	323, 1269, 1305, 1634
ApeKI	GCWGC	7 cut(s)	245, 248, 794, 953, 1802, 1871, 1874
ApoI	RAATTY	3 cut(s)	541, 751, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	1501, 1533
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	4 cut(s)	79, 94, 126, 241
AspS9I	GGNCC	1 cut(s)	1634
AsuC2I	CCSGG	3 cut(s)	259, 827, 907
AsuHPI	GGTGA	4 cut(s)	794, 1298, 1707, 2030
AsuNHI	GCTAGC	1 cut(s)	494
AvaI	CYCGRG	2 cut(s)	708, 1019
BalI	TGGCCA	1 cut(s)	1271
BamHI	GGATCC	1 cut(s)	1939
BanII	GRGCYC	2 cut(s)	1678, 1763
BauI	CACGAG	2 cut(s)	343, 1762
BbsI	GAAGAC	2 cut(s)	1734, 1839
Bbv12I	GWGCWC	3 cut(s)	1090, 1678, 1763
BbvI	GCAGC	7 cut(s)	232, 260, 806, 965, 1814, 1858, 1861
BccI	CCATC	2 cut(s)	872, 1163
BcgI	CGANNNNNNTGC	4 cut(s)	181, 215, 487, 521
BciT130I	CCWGG	3 cut(s)	1268, 1632, 1944
BciVI	GTATCC	1 cut(s)	1634
BclI	TGATCA	1 cut(s)	1143
BcnI	CCSGG	3 cut(s)	259, 827, 907
BcoDI	GTCTC	3 cut(s)	323, 1523, 1551
BcuI	ACTAGT	1 cut(s)	1048
BfaI	CTAG	2 cut(s)	495, 1049
BfmI	CTRYAG	1 cut(s)	246
BfuAI	ACCTGC	2 cut(s)	947, 1801
BfuI	GTATCC	1 cut(s)	1634
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	2063
BisI	GCNGC	9 cut(s)	33, 172, 246, 249, 795, 954, 1803, 1872, 1875
BlpI	GCTNAGC	2 cut(s)	1757, 1949
BlsI	GCNGC	9 cut(s)	34, 173, 247, 250, 796, 955, 1804, 1873, 1876
Bme1390I	CCNGG	6 cut(s)	259, 827, 907, 1268, 1632, 1944
BmeT110I	CYCGRG	2 cut(s)	708, 1019
BmgT120I	GGNCC	1 cut(s)	1634
BmiI	GGNNCC	2 cut(s)	1419, 1941
BmrFI	CCNGG	6 cut(s)	259, 827, 907, 1268, 1632, 1944
BmsI	GCATC	6 cut(s)	175, 517, 592, 1434, 1816, 2020
BmtI	GCTAGC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	1734, 1839
BpmI	CTGGAG	1 cut(s)	639
Bpu10I	CCTNAGC	2 cut(s)	68, 1638
Bpu1102I	GCTNAGC	2 cut(s)	1757, 1949
BpuEI	CTTGAG	3 cut(s)	392, 984, 1392
BpuMI	CCSGG	3 cut(s)	259, 827, 907
BsaBI	GATNNNNATC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	1523
BsaJI	CCNNGG	2 cut(s)	1631, 1943
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	4 cut(s)	258, 477, 832, 1884
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	1 cut(s)	290
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	3 cut(s)	1268, 1632, 1944
BseDI	CCNNGG	2 cut(s)	1631, 1943
BseGI	GGATG	5 cut(s)	468, 699, 883, 1126, 1770
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	4 cut(s)	258, 477, 832, 1884
BseMI	GCAATG	1 cut(s)	290
BseMII	CTCAG	9 cut(s)	82, 334, 647, 1104, 1128, 1229, 1569, 1748, 1940
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	7 cut(s)	232, 260, 806, 965, 1814, 1858, 1861
BseYI	CCCAGC	2 cut(s)	178, 857
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	3 cut(s)	79, 92, 124
BshFI	GGCC	4 cut(s)	325, 1271, 1307, 1636
BsiHKAI	GWGCWC	3 cut(s)	1090, 1678, 1763
BsiHKCI	CYCGRG	2 cut(s)	708, 1019
BsiSI	CCGG	5 cut(s)	259, 276, 827, 907, 1878
BslI	CCNNNNNNNGG	4 cut(s)	258, 477, 832, 1884
BsmAI	GTCTC	3 cut(s)	323, 1523, 1551
BsnI	GGCC	4 cut(s)	325, 1271, 1307, 1636
Bso31I	GGTCTC	1 cut(s)	1523
BsoBI	CYCGRG	2 cut(s)	708, 1019
Bsp1286I	GDGCHC	3 cut(s)	1090, 1678, 1763
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	4 cut(s)	1143, 1503, 1939, 2063
Bsp1720I	GCTNAGC	2 cut(s)	1757, 1949
BspACI	CCGC	3 cut(s)	32, 171, 1344
BspANI	GGCC	4 cut(s)	325, 1271, 1307, 1636
BspCNI	CTCAG	9 cut(s)	81, 333, 646, 1105, 1129, 1230, 1568, 1749, 1941
BspFNI	CGCG	3 cut(s)	79, 92, 124
BspLI	GGNNCC	2 cut(s)	1419, 1941
BspMAI	CTGCAG	1 cut(s)	250
BspMI	ACCTGC	2 cut(s)	947, 1801
BspOI	GCTAGC	1 cut(s)	498
BspPI	GGATC	3 cut(s)	1498, 1934, 1947
BspTNI	GGTCTC	1 cut(s)	1523
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	275
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	1631, 1943
BssMI	GATC	4 cut(s)	1143, 1503, 1939, 2063
BssSI	CACGAG	2 cut(s)	343, 1762
Bst2BI	CACGAG	2 cut(s)	343, 1762
Bst2UI	CCWGG	3 cut(s)	1268, 1632, 1944
Bst4CI	ACNGT	7 cut(s)	9, 115, 168, 1376, 1571, 1743, 1838
Bst6I	CTCTTC	2 cut(s)	1019, 2004
BstAUI	TGTACA	1 cut(s)	138
BstC8I	GCNNGC	6 cut(s)	176, 190, 243, 496, 1305, 1561
BstF5I	GGATG	5 cut(s)	468, 699, 883, 1126, 1770
BstFNI	CGCG	3 cut(s)	79, 92, 124
BstHHI	GCGC	4 cut(s)	79, 94, 126, 241
BstKTI	GATC	4 cut(s)	1146, 1506, 1942, 2066
BstMAI	GTCTC	3 cut(s)	323, 1523, 1551
BstMBI	GATC	4 cut(s)	1143, 1503, 1939, 2063
BstMWI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1094, 1212, 1253, 1481, 2030
BstNI	CCWGG	3 cut(s)	1268, 1632, 1944
BstSCI	CCNGG	6 cut(s)	257, 825, 905, 1266, 1630, 1942
BstSFI	CTRYAG	1 cut(s)	246
BstUI	CGCG	3 cut(s)	79, 92, 124
BstV1I	GCAGC	7 cut(s)	232, 260, 806, 965, 1814, 1858, 1861
BstV2I	GAAGAC	2 cut(s)	1734, 1839
BstX2I	RGATCY	3 cut(s)	1503, 1939, 2063
BstXI	CCANNNNNNTGG	1 cut(s)	1514
BstYI	RGATCY	3 cut(s)	1503, 1939, 2063
BsuI	GTATCC	1 cut(s)	1634
BsuRI	GGCC	4 cut(s)	325, 1271, 1307, 1636
BtgZI	GCGATG	1 cut(s)	905
BtsCI	GGATG	5 cut(s)	468, 699, 883, 1126, 1770
BtsI	GCAGTG	4 cut(s)	270, 755, 1642, 2033
BtsIMutI	CAGTG	6 cut(s)	270, 755, 1576, 1642, 1843, 2033
BveI	ACCTGC	2 cut(s)	947, 1801
Cac8I	GCNNGC	6 cut(s)	176, 190, 243, 496, 1305, 1561
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	4 cut(s)	79, 94, 126, 241
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	1634
CseI	GACGC	2 cut(s)	68, 1756
Csp6I	GTAC	5 cut(s)	139, 366, 960, 1060, 1523
CspCI	CAANNNNNGTGG	2 cut(s)	1552, 1587
CviQI	GTAC	5 cut(s)	139, 366, 960, 1060, 1523
DpnI	GATC	4 cut(s)	1145, 1505, 1941, 2065
DpnII	GATC	4 cut(s)	1143, 1503, 1939, 2063
EaeI	YGGCCR	1 cut(s)	1269
Eam1104I	CTCTTC	2 cut(s)	1019, 2004
EarI	CTCTTC	2 cut(s)	1019, 2004
Ecl136II	GAGCTC	2 cut(s)	1676, 1761
Eco147I	AGGCCT	1 cut(s)	1307
Eco24I	GRGCYC	2 cut(s)	1678, 1763
Eco31I	GGTCTC	1 cut(s)	1523
Eco53kI	GAGCTC	2 cut(s)	1676, 1761
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	708, 1019
EcoICRI	GAGCTC	2 cut(s)	1676, 1761
EcoRI	GAATTC	2 cut(s)	541, 751
EcoRII	CCWGG	3 cut(s)	1266, 1630, 1942
EcoT38I	GRGCYC	2 cut(s)	1678, 1763
FalI	AAGNNNNNCTT	2 cut(s)	1719, 1751
FauI	CCCGC	1 cut(s)	1337
FbaI	TGATCA	1 cut(s)	1143
FblI	GTMKAC	1 cut(s)	82
Fnu4HI	GCNGC	9 cut(s)	33, 172, 246, 249, 795, 954, 1803, 1872, 1875
FokI	GGATG	5 cut(s)	475, 686, 890, 1133, 1757
FriOI	GRGCYC	2 cut(s)	1678, 1763
Fsp4HI	GCNGC	9 cut(s)	33, 172, 246, 249, 795, 954, 1803, 1872, 1875
FspBI	CTAG	2 cut(s)	495, 1049
GlaI	GCGC	4 cut(s)	78, 93, 125, 240
GluI	GCNGC	9 cut(s)	33, 172, 246, 249, 795, 954, 1803, 1872, 1875
GsaI	CCCAGC	2 cut(s)	182, 861
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	4 cut(s)	325, 1271, 1307, 1636
HapII	CCGG	5 cut(s)	259, 276, 827, 907, 1878
HgaI	GACGC	2 cut(s)	68, 1756
HhaI	GCGC	4 cut(s)	79, 94, 126, 241
Hin6I	GCGC	4 cut(s)	77, 92, 124, 239
HinP1I	GCGC	4 cut(s)	77, 92, 124, 239
HincII	GTYRAC	3 cut(s)	83, 1225, 1463
HindII	GTYRAC	3 cut(s)	83, 1225, 1463
HindIII	AAGCTT	1 cut(s)	986
HinfI	GANTC	8 cut(s)	84, 423, 685, 711, 1017, 1294, 1348, 1385
HpaII	CCGG	5 cut(s)	259, 276, 827, 907, 1878
HphI	GGTGA	4 cut(s)	794, 1298, 1707, 2030
Hpy166II	GTNNAC	5 cut(s)	17, 83, 639, 1225, 1463
Hpy188I	TCNGA	8 cut(s)	268, 447, 509, 868, 976, 1114, 1239, 1264
Hpy188III	TCNNGA	8 cut(s)	343, 371, 427, 1021, 1066, 1132, 1158, 1736
Hpy8I	GTNNAC	5 cut(s)	17, 83, 639, 1225, 1463
Hpy99I	CGWCG	3 cut(s)	84, 119, 206
HpyAV	CCTTC	6 cut(s)	64, 578, 880, 1111, 1606, 1930
HpyCH4III	ACNGT	7 cut(s)	9, 115, 168, 1376, 1571, 1743, 1838
HpyCH4IV	ACGT	1 cut(s)	1928
HpyF10VI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1094, 1212, 1253, 1481, 2030
HpySE526I	ACGT	1 cut(s)	1928
HspAI	GCGC	4 cut(s)	77, 92, 124, 239
Ksp22I	TGATCA	1 cut(s)	1143
Kzo9I	GATC	4 cut(s)	1143, 1503, 1939, 2063
LmnI	GCTCC	2 cut(s)	1244, 1417
Lsp1109I	GCAGC	7 cut(s)	232, 260, 806, 965, 1814, 1858, 1861
LweI	GCATC	6 cut(s)	175, 517, 592, 1434, 1816, 2020
MaeI	CTAG	2 cut(s)	495, 1049
MaeII	ACGT	1 cut(s)	1928
MaeIII	GTNAC	4 cut(s)	773, 782, 1534, 1713
MalI	GATC	4 cut(s)	1145, 1505, 1941, 2065
MboI	GATC	4 cut(s)	1143, 1503, 1939, 2063
MflI	RGATCY	3 cut(s)	1503, 1939, 2063
MhlI	GDGCHC	3 cut(s)	1090, 1678, 1763
MlsI	TGGCCA	1 cut(s)	1271
MluCI	AATT	5 cut(s)	541, 751, 895, 1182, 1603
MluNI	TGGCCA	1 cut(s)	1271
MlyI	GAGTC	4 cut(s)	78, 720, 1011, 1357
MmeI	TCCRAC	2 cut(s)	1287, 1415
Mox20I	TGGCCA	1 cut(s)	1271
MroXI	GAANNNNTTC	1 cut(s)	588
MscI	TGGCCA	1 cut(s)	1271
MseI	TTAA	9 cut(s)	38, 810, 930, 1185, 1277, 1310, 1667, 1722, 1917
MslI	CAYNNNNRTG	2 cut(s)	10, 347
Msp20I	TGGCCA	1 cut(s)	1271
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	5 cut(s)	259, 276, 827, 907, 1878
MspR9I	CCNGG	6 cut(s)	259, 827, 907, 1268, 1632, 1944
MvaI	CCWGG	3 cut(s)	1268, 1632, 1944
MvnI	CGCG	3 cut(s)	79, 92, 124
MwoI	GCNNNNNNNGC	8 cut(s)	245, 281, 740, 1094, 1212, 1253, 1481, 2030
NciI	CCSGG	3 cut(s)	259, 827, 907
NdeII	GATC	4 cut(s)	1143, 1503, 1939, 2063
NheI	GCTAGC	1 cut(s)	494
NlaIV	GGNNCC	2 cut(s)	1419, 1941
NmuCI	GTSAC	2 cut(s)	782, 1713
OliI	CACNNNNGTG	2 cut(s)	10, 347
PaeR7I	CTCGAG	1 cut(s)	1019
PceI	AGGCCT	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	588
PfeI	GAWTC	4 cut(s)	423, 685, 1294, 1385
PfoI	TCCNGGA	1 cut(s)	257
PkrI	GCNGC	9 cut(s)	34, 173, 247, 250, 796, 955, 1804, 1873, 1876
PleI	GAGTC	4 cut(s)	78, 719, 1011, 1356
PpsI	GAGTC	4 cut(s)	78, 719, 1011, 1356
Psp124BI	GAGCTC	2 cut(s)	1678, 1763
Psp6I	CCWGG	3 cut(s)	1266, 1630, 1942
PspFI	CCCAGC	2 cut(s)	178, 857
PspGI	CCWGG	3 cut(s)	1266, 1630, 1942
PspN4I	GGNNCC	2 cut(s)	1419, 1941
PspPI	GGNCC	1 cut(s)	1634
PstI	CTGCAG	1 cut(s)	250
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	3 cut(s)	1503, 1939, 2063
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	5 cut(s)	140, 367, 961, 1061, 1524
RsaNI	GTAC	5 cut(s)	139, 366, 960, 1060, 1523
RseI	CAYNNNNRTG	2 cut(s)	10, 347
SacI	GAGCTC	2 cut(s)	1678, 1763
SalI	GTCGAC	1 cut(s)	81
SaqAI	TTAA	9 cut(s)	38, 810, 930, 1185, 1277, 1310, 1667, 1722, 1917
SatI	GCNGC	9 cut(s)	33, 172, 246, 249, 795, 954, 1803, 1872, 1875
Sau3AI	GATC	4 cut(s)	1143, 1503, 1939, 2063
Sau96I	GGNCC	1 cut(s)	1634
SchI	GAGTC	4 cut(s)	78, 720, 1011, 1357
ScrFI	CCNGG	6 cut(s)	259, 827, 907, 1268, 1632, 1944
SduI	GDGCHC	3 cut(s)	1090, 1678, 1763
SfaNI	GCATC	6 cut(s)	175, 517, 592, 1434, 1816, 2020
SfcI	CTRYAG	1 cut(s)	246
Sfr274I	CTCGAG	1 cut(s)	1019
SlaI	CTCGAG	1 cut(s)	1019
SmiMI	CAYNNNNRTG	2 cut(s)	10, 347
SmlI	CTYRAG	4 cut(s)	371, 999, 1019, 1407
SmoI	CTYRAG	4 cut(s)	371, 999, 1019, 1407
SpeI	ACTAGT	1 cut(s)	1048
Sse9I	AATT	5 cut(s)	541, 751, 895, 1182, 1603
SseBI	AGGCCT	1 cut(s)	1307
SsiI	CCGC	3 cut(s)	32, 171, 1344
SspI	AATATT	1 cut(s)	1975
SspMI	CTAG	2 cut(s)	495, 1049
SstI	GAGCTC	2 cut(s)	1678, 1763
StuI	AGGCCT	1 cut(s)	1307
StyD4I	CCNGG	6 cut(s)	257, 825, 905, 1266, 1630, 1942
TaaI	ACNGT	7 cut(s)	9, 115, 168, 1376, 1571, 1743, 1838
TaiI	ACGT	1 cut(s)	1931
TaqI	TCGA	9 cut(s)	82, 201, 335, 545, 1020, 1157, 1442, 1672, 1678
TasI	AATT	5 cut(s)	541, 751, 895, 1182, 1603
TatI	WGTACW	3 cut(s)	138, 365, 1059
TauI	GCSGC	2 cut(s)	35, 174
TfiI	GAWTC	4 cut(s)	423, 685, 1294, 1385
Tru1I	TTAA	9 cut(s)	38, 810, 930, 1185, 1277, 1310, 1667, 1722, 1917
Tru9I	TTAA	9 cut(s)	38, 810, 930, 1185, 1277, 1310, 1667, 1722, 1917
TscAI	CASTG	6 cut(s)	277, 762, 1576, 1649, 1843, 2040
TseFI	GTSAC	2 cut(s)	782, 1713
TseI	GCWGC	7 cut(s)	245, 248, 794, 953, 1802, 1871, 1874
Tsp45I	GTSAC	2 cut(s)	782, 1713
TspGWI	ACGGA	1 cut(s)	1094
TspRI	CASTG	6 cut(s)	277, 762, 1576, 1649, 1843, 2040
XapI	RAATTY	3 cut(s)	541, 751, 895
XhoI	CTCGAG	1 cut(s)	1019
XmiI	GTMKAC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	2 cut(s)	495, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.