Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002081.1

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

51086 .. 51721

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002081.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggttggtagagatgttgtggcttggagttcgatgattttcgggcatttgaagaatggtaagaacaaggaagggcttcatttgtttgatggtatgttgaggactggagttatttctactcatgtcacatattcagtggttttgaatgtgtgtaggagattgagatctttgaatctggggaaaatcatccatgccctagtcatagtttcaagcacacaagctaatttggctttggagaattcactgcttcatatgtattgtaactctggtgacacccaagtagcttttagtgtgtttaataaaatgtatagcctagatttggtttcatggaacacaatgattgctgggtattcagaaaacgaggatggggagaaggcgatgaacttgtttgcccagttgaaaagattgtgttatcttaaaccagatgaatatacttatgcagctatcatatctgcagtaggtacataccttgcttctgactatggtaagcttcttcacgctcaagtcataaaagtaggactcaagaatagtatctttgtaagaacggcactagtgtctatgtacttcaagaactgcgaaatgtataatgctgaaaaggcattttattgcatttcggagaaggatgttgttctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

211

Amino Acids

23.64

Weight (kDa)

8.72

Isoelectric Point (pI)

21.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	2 cut(s)	463, 563
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	6 cut(s)	52, 145, 172, 210, 400, 568
AhlI	ACTAGT	1 cut(s)	550
AluBI	AGCT	4 cut(s)	221, 284, 443, 490
AluI	AGCT	4 cut(s)	221, 284, 443, 490
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	238
Asp700I	GAANNNNTTC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	2 cut(s)	83, 359
BceAI	ACGGC	1 cut(s)	561
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	4 cut(s)	197, 314, 551, 634
BfmI	CTRYAG	1 cut(s)	453
BglII	AGATCT	1 cut(s)	164
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpmI	CTGGAG	1 cut(s)	126
BpuEI	CTTGAG	2 cut(s)	486, 506
BsaBI	GATNNNNATC	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	2 cut(s)	109, 394
Bse8I	GATNNNNATC	1 cut(s)	163
BseGI	GGATG	3 cut(s)	186, 370, 628
BseJI	GATNNNNATC	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseNI	ACTGG	2 cut(s)	109, 394
BseXI	GCAGC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	109, 394
BssMI	GATC	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	186, 370, 628
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 596
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	452
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	186, 370, 628
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	141, 242
Csp6I	GTAC	2 cut(s)	462, 562
CviAII	CATG	3 cut(s)	122, 191, 327
CviJI	RGCY	8 cut(s)	23, 76, 221, 230, 284, 312, 443, 490
CviKI_1	RGCY	8 cut(s)	23, 76, 221, 230, 284, 312, 443, 490
CviQI	GTAC	2 cut(s)	462, 562
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	125, 194, 330
FatI	CATG	3 cut(s)	121, 190, 326
FauNDI	CATATG	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	2 cut(s)	173, 377
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	4 cut(s)	197, 314, 551, 634
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	125, 194, 330
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	2 cut(s)	172, 519
HphI	GGTGA	1 cut(s)	281
Hpy188I	TCNGA	3 cut(s)	355, 478, 616
Hpy188III	TCNNGA	2 cut(s)	523, 568
HpyAV	CCTTC	3 cut(s)	65, 367, 613
HpyCH4V	TGCA	3 cut(s)	440, 455, 609
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 596
Hsp92II	CATG	3 cut(s)	125, 194, 330
Kzo9I	GATC	1 cut(s)	164
LpnPI	CCDG	6 cut(s)	90, 161, 252, 330, 407, 435
Lsp1109I	GCAGC	1 cut(s)	452
MaeI	CTAG	4 cut(s)	197, 314, 551, 634
MaeIII	GTNAC	3 cut(s)	124, 260, 269
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	2 cut(s)	64, 485
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	2 cut(s)	223, 238
MlyI	GAGTC	1 cut(s)	513
MnlI	CCTC	2 cut(s)	93, 355
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	297, 417
MwoI	GCNNNNNNNGC	2 cut(s)	227, 596
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	125, 194, 330
NmuCI	GTSAC	2 cut(s)	124, 269
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	513
PpsI	GAGTC	1 cut(s)	513
PspFI	CCCAGC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	463, 563
RsaNI	GTAC	2 cut(s)	462, 562
SaqAI	TTAA	2 cut(s)	297, 417
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	513
SetI	ASST	6 cut(s)	223, 286, 445, 463, 471, 492
SfcI	CTRYAG	1 cut(s)	453
SmlI	CTYRAG	2 cut(s)	501, 521
SmoI	CTYRAG	2 cut(s)	501, 521
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	2 cut(s)	223, 238
SspMI	CTAG	4 cut(s)	197, 314, 551, 634
TaqI	TCGA	1 cut(s)	32
TasI	AATT	2 cut(s)	223, 238
TatI	WGTACW	1 cut(s)	561
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	297, 417
Tru9I	TTAA	2 cut(s)	297, 417
TscAI	CASTG	2 cut(s)	141, 249
TseFI	GTSAC	2 cut(s)	124, 269
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	2 cut(s)	124, 269
TspDTI	ATGAA	5 cut(s)	68, 239, 315, 395, 441
TspRI	CASTG	2 cut(s)	141, 249
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	4 cut(s)	197, 314, 551, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.