RLG00000017261

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002972
Physical Location & Seq
Reverse (-)
14575009 .. 14578706
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017261

Sequence Viewer

Length: 723 bp
ATGAGGGGCGAGGAGTCTCTGGAGACATCTCAACACCAAACGGTGCCGCCGCAGCTGAGGGCCTTCACTGTGGAGCTCGACATCGGCGTCGACGACTCTAACGCGGCCCACGCGCTTGAAGACGTACAGAAGATCACTTCACTTCACTTCACTTACGACGGCAAGAGATATGGCTTTAGGGAGGAGATGGCAGTAGATGGAGATTTGGTCTATTCTCGATCGGTGGCCGGCCAGGCTGCTGGTTCGCCTTGCTGCTCCGAGTTTTTGGGTGGGTGTTGGTCATGTGGCGTGGGTGTTGCTTGCAACCACAGTGGTTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGGATCCCACGCGGGCCTAAGCACTACTCTTGCATGAACTTGGAGATAGGAGTTCATGCAGCAGAGCAGGTTCTAAAGGTTGATGCAGAAGACAGTGCAACACATATCTTGCTTTCAAATCTCTATGCTGCTGCTGGAAAATGGGATAAGGTCGTAGAAATAAGGAGAAAGATTAAAGAACTGACGTTAGAGAAGGATCCTGGGCTAAGCTGGATTGAGGATAAGATGAATATTCAGGTATTCAGTTCTGGTGTTCAATCGAAGAAAGAGGTTGGTGAAGCCAAAGCTGCACTGCATTGGCTACAAGGAAACATGGTAAGATCTCAAAGAGATGAACTTGTTGAACCTATTTATACCTCATAG

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

5.4

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 133 - 193 4.6e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 90
AccII CGCG 3 cut(s) 104, 113, 372
AciI CCGC 4 cut(s) 47, 50, 104, 372
AclWI GGATC 4 cut(s) 358, 371, 551, 564
AcoI YGGCCR 2 cut(s) 225, 229
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 5 cut(s) 119, 323, 477, 617, 704
AjnI CCWGG 2 cut(s) 231, 559
AluBI AGCT 4 cut(s) 55, 76, 570, 647
AluI AGCT 4 cut(s) 55, 76, 570, 647
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 17, 21
AlwI GGATC 4 cut(s) 358, 371, 551, 564
AoxI GGCC 5 cut(s) 60, 105, 225, 229, 374
ApeKI GCWGC 7 cut(s) 52, 236, 252, 419, 488, 491, 647
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 3 cut(s) 60, 106, 374
AsuHPI GGTGA 1 cut(s) 647
BamHI GGATCC 2 cut(s) 363, 556
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 2 cut(s) 126, 456
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 56
BbvI GCAGC 7 cut(s) 64, 223, 239, 431, 475, 478, 634
BccI CCATC 2 cut(s) 181, 191
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 2 cut(s) 233, 561
BcoDI GTCTC 2 cut(s) 17, 21
BfuAI ACCTGC 1 cut(s) 418
BglI GCCNNNNNGGC 1 cut(s) 233
BglII AGATCT 1 cut(s) 680
BlpI GCTNAGC 1 cut(s) 566
Bme1390I CCNGG 2 cut(s) 233, 561
BmgT120I GGNCC 3 cut(s) 60, 106, 374
BmiI GGNNCC 3 cut(s) 45, 365, 558
BmrFI CCNGG 2 cut(s) 233, 561
BmsI GCATC 1 cut(s) 433
BpiI GAAGAC 2 cut(s) 126, 456
BpmI CTGGAG 1 cut(s) 41
Bpu10I CCTNAGC 2 cut(s) 56, 378
Bpu1102I GCTNAGC 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 560
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bse118I RCCGGY 1 cut(s) 227
BseBI CCWGG 2 cut(s) 233, 561
BseDI CCNNGG 1 cut(s) 560
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 2 cut(s) 26, 197
BseXI GCAGC 7 cut(s) 64, 223, 239, 431, 475, 478, 634
BsgI GTGCAG 1 cut(s) 633
Bsh1236I CGCG 3 cut(s) 104, 113, 372
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 5 cut(s) 62, 107, 227, 231, 376
BshNI GGYRCC 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 221
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 17, 21
BsnI GGCC 5 cut(s) 62, 107, 227, 231, 376
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 5 cut(s) 132, 218, 363, 556, 680
Bsp1720I GCTNAGC 1 cut(s) 566
BspACI CCGC 4 cut(s) 47, 50, 104, 372
BspANI GGCC 5 cut(s) 62, 107, 227, 231, 376
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 3 cut(s) 104, 113, 372
BspLI GGNNCC 3 cut(s) 45, 365, 558
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 4 cut(s) 358, 371, 551, 564
BspT107I GGYRCC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 5 cut(s) 132, 218, 363, 556, 680
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 233, 561
Bst4CI ACNGT 4 cut(s) 43, 70, 311, 455
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 229, 301, 374
BstDEI CTNAG 3 cut(s) 56, 378, 566
BstFNI CGCG 3 cut(s) 104, 113, 372
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 5 cut(s) 135, 221, 366, 559, 683
BstMAI GTCTC 2 cut(s) 17, 21
BstMBI GATC 5 cut(s) 132, 218, 363, 556, 680
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 4 cut(s) 52, 110, 233, 647
BstNI CCWGG 2 cut(s) 233, 561
BstSCI CCNGG 2 cut(s) 231, 559
BstUI CGCG 3 cut(s) 104, 113, 372
BstV1I GCAGC 7 cut(s) 64, 223, 239, 431, 475, 478, 634
BstV2I GAAGAC 2 cut(s) 126, 456
BstX2I RGATCY 3 cut(s) 363, 556, 680
BstXI CCANNNNNNTGG 1 cut(s) 239
BstYI RGATCY 3 cut(s) 363, 556, 680
BsuRI GGCC 5 cut(s) 62, 107, 227, 231, 376
BtsI GCAGTG 1 cut(s) 650
BtsIMutI CAGTG 4 cut(s) 66, 316, 460, 650
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 3 cut(s) 229, 301, 374
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 60, 106, 374
CseI GACGC 1 cut(s) 76
Csp6I GTAC 1 cut(s) 125
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 4 cut(s) 282, 394, 416, 673
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 3 cut(s) 56, 378, 566
DpnI GATC 5 cut(s) 134, 220, 365, 558, 682
DpnII GATC 5 cut(s) 132, 218, 363, 556, 680
DrdI GACNNNNNNGTC 1 cut(s) 86
DseDI GACNNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 2 cut(s) 225, 229
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 231, 559
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 4 cut(s) 285, 397, 419, 676
FatI CATG 4 cut(s) 281, 393, 415, 672
FauI CCCGC 1 cut(s) 365
FblI GTMKAC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 78
FseI GGCCGGCC 1 cut(s) 231
GlaI GCGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 5 cut(s) 62, 107, 227, 231, 376
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 285, 397, 419, 676
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 14, 95
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 20, 216
Hpy8I GTNNAC 1 cut(s) 91
Hpy99I CGWCG 3 cut(s) 92, 95, 161
HpyAV CCTTC 3 cut(s) 73, 346, 547
HpyCH4III ACNGT 4 cut(s) 43, 70, 311, 455
HpyCH4IV ACGT 2 cut(s) 123, 545
HpyCH4V TGCA 7 cut(s) 303, 393, 419, 446, 458, 650, 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 52, 110, 233, 647
HpyF3I CTNAG 3 cut(s) 56, 378, 566
HpySE526I ACGT 2 cut(s) 123, 545
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 285, 397, 419, 676
HspAI GCGC 1 cut(s) 113
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Kzo9I GATC 5 cut(s) 132, 218, 363, 556, 680
LmnI GCTCC 2 cut(s) 73, 260
Lsp1109I GCAGC 7 cut(s) 64, 223, 239, 431, 475, 478, 634
LweI GCATC 1 cut(s) 433
MaeII ACGT 2 cut(s) 123, 545
MalI GATC 5 cut(s) 134, 220, 365, 558, 682
MboI GATC 5 cut(s) 132, 218, 363, 556, 680
MboII GAAGA 4 cut(s) 131, 142, 461, 634
MflI RGATCY 3 cut(s) 363, 556, 680
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 1 cut(s) 343
MlyI GAGTC 2 cut(s) 23, 89
MnlI CCTC 5 cut(s) 4, 51, 175, 571, 622
MroNI GCCGGC 1 cut(s) 227
MseI TTAA 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 2 cut(s) 233, 561
MvaI CCWGG 2 cut(s) 233, 561
MvnI CGCG 3 cut(s) 104, 113, 372
MwoI GCNNNNNNNGC 4 cut(s) 52, 110, 233, 647
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 5 cut(s) 132, 218, 363, 556, 680
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 285, 397, 419, 676
NlaIV GGNNCC 3 cut(s) 45, 365, 558
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 90
PdiI GCCGGC 1 cut(s) 229
Ple19I CGATCG 1 cut(s) 221
PleI GAGTC 2 cut(s) 22, 89
PpsI GAGTC 2 cut(s) 22, 89
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 2 cut(s) 231, 559
PspGI CCWGG 2 cut(s) 231, 559
PspN4I GGNNCC 3 cut(s) 45, 365, 558
PspPI GGNCC 3 cut(s) 60, 106, 374
PsuI RGATCY 3 cut(s) 363, 556, 680
PvuI CGATCG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 55
RigI GGCCGGCC 1 cut(s) 231
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
SacI GAGCTC 1 cut(s) 78
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 534
Sau3AI GATC 5 cut(s) 132, 218, 363, 556, 680
Sau96I GGNCC 3 cut(s) 60, 106, 374
SchI GAGTC 2 cut(s) 23, 89
ScrFI CCNGG 2 cut(s) 233, 561
SduI GDGCHC 1 cut(s) 78
SfaNI GCATC 1 cut(s) 433
SgrDI CGTCGACG 1 cut(s) 89
Sse9I AATT 1 cut(s) 343
SsiI CCGC 4 cut(s) 47, 50, 104, 372
SspI AATATT 1 cut(s) 592
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 231, 559
TaaI ACNGT 4 cut(s) 43, 70, 311, 455
TaiI ACGT 2 cut(s) 126, 548
TaqI TCGA 4 cut(s) 78, 90, 217, 620
TasI AATT 1 cut(s) 343
TauI GCSGC 3 cut(s) 49, 52, 107
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TscAI CASTG 4 cut(s) 73, 316, 460, 657
TseI GCWGC 7 cut(s) 52, 236, 252, 419, 488, 491, 647
TspDTI ATGAA 5 cut(s) 365, 404, 410, 602, 708
TspRI CASTG 4 cut(s) 73, 316, 460, 657
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.