Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50420 AT3G50420 |
| fragaria_vesca | FvH4_1g14840 |
| malus_domestica | MD06G1092000.v1.1 MD15G1276000.v1.1 |
| prunus_persica | Prupe.7G142000_v2.0.a1 |
| pyrus_communis | pycom06g08800 pycom15g23890 |
| rosa_chinensis | RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801 |
| rosa_laevigata | RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861 |
| rosa_multiflora | Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014 |
| rosa_roxburghii | Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530 |
| rosa_rugosa | Rorug01G0084100 Rorug02G0117300 |
| rosa_samantha | Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800 |
| rosa_wichuraiana | Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 748, 805 |
| AciI | CCGC | 1 cut(s) | 786 |
| AclWI | GGATC | 1 cut(s) | 832 |
| AcsI | RAATTY | 1 cut(s) | 193 |
| AfaI | GTAC | 2 cut(s) | 418, 858 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 274, 748, 805 |
| AgsI | TTSAA | 8 cut(s) | 52, 100, 127, 165, 355, 492, 665, 823 |
| AjnI | CCWGG | 1 cut(s) | 267 |
| AluBI | AGCT | 6 cut(s) | 176, 239, 445, 581, 826, 893 |
| AluI | AGCT | 6 cut(s) | 176, 239, 445, 581, 826, 893 |
| Alw26I | GTCTC | 2 cut(s) | 857, 885 |
| AlwI | GGATC | 1 cut(s) | 832 |
| AoxI | GGCC | 1 cut(s) | 639 |
| ApoI | RAATTY | 1 cut(s) | 193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 835, 867 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AspS9I | GGNCC | 1 cut(s) | 751 |
| AsuHPI | GGTGA | 3 cut(s) | 236, 632, 788 |
| AsuII | TTCGAA | 1 cut(s) | 770 |
| AvaII | GGWCC | 1 cut(s) | 751 |
| BccI | CCATC | 2 cut(s) | 314, 497 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 760, 794 |
| BciT130I | CCWGG | 1 cut(s) | 269 |
| BclI | TGATCA | 1 cut(s) | 477 |
| BcoDI | GTCTC | 2 cut(s) | 857, 885 |
| BfaI | CTAG | 1 cut(s) | 860 |
| BfmI | CTRYAG | 1 cut(s) | 408 |
| BglII | AGATCT | 1 cut(s) | 119 |
| BlpI | GCTNAGC | 1 cut(s) | 782 |
| Bme1390I | CCNGG | 1 cut(s) | 269 |
| Bme18I | GGWCC | 1 cut(s) | 751 |
| BmgT120I | GGNCC | 1 cut(s) | 751 |
| BmiI | GGNNCC | 2 cut(s) | 753, 899 |
| BmrFI | CCNGG | 1 cut(s) | 269 |
| BmrI | ACTGGG | 1 cut(s) | 343 |
| BmuI | ACTGGG | 1 cut(s) | 343 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 782 |
| Bpu14I | TTCGAA | 1 cut(s) | 770 |
| BsaBI | GATNNNNATC | 1 cut(s) | 118 |
| BsaI | GGTCTC | 1 cut(s) | 857 |
| BsaJI | CCNNGG | 1 cut(s) | 799 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 274, 748, 805 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse8I | GATNNNNATC | 1 cut(s) | 118 |
| BseBI | CCWGG | 1 cut(s) | 269 |
| BseDI | CCNNGG | 1 cut(s) | 799 |
| BseGI | GGATG | 2 cut(s) | 141, 325 |
| BseJI | GATNNNNATC | 1 cut(s) | 118 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 274, 748, 805 |
| BseMII | CTCAG | 2 cut(s) | 586, 903 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BshFI | GGCC | 1 cut(s) | 641 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 274, 748, 805 |
| BsmAI | GTCTC | 2 cut(s) | 857, 885 |
| BsnI | GGCC | 1 cut(s) | 641 |
| Bso31I | GGTCTC | 1 cut(s) | 857 |
| Bsp119I | TTCGAA | 1 cut(s) | 770 |
| Bsp143I | GATC | 4 cut(s) | 119, 477, 598, 837 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 782 |
| Bsp19I | CCATGG | 1 cut(s) | 799 |
| BspACI | CCGC | 1 cut(s) | 786 |
| BspANI | GGCC | 1 cut(s) | 641 |
| BspCNI | CTCAG | 2 cut(s) | 585, 902 |
| BspLI | GGNNCC | 2 cut(s) | 753, 899 |
| BspMAI | CTGCAG | 1 cut(s) | 412 |
| BspPI | GGATC | 1 cut(s) | 832 |
| BspT104I | TTCGAA | 1 cut(s) | 770 |
| BspTNI | GGTCTC | 1 cut(s) | 857 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssECI | CCNNGG | 1 cut(s) | 799 |
| BssMI | GATC | 4 cut(s) | 119, 477, 598, 837 |
| BssT1I | CCWWGG | 1 cut(s) | 799 |
| Bst2UI | CCWGG | 1 cut(s) | 269 |
| Bst4CI | ACNGT | 3 cut(s) | 710, 731, 905 |
| BstBI | TTCGAA | 1 cut(s) | 770 |
| BstC8I | GCNNGC | 2 cut(s) | 443, 639 |
| BstDEI | CTNAG | 3 cut(s) | 572, 782, 889 |
| BstDSI | CCRYGG | 1 cut(s) | 799 |
| BstF5I | GGATG | 2 cut(s) | 141, 325 |
| BstKTI | GATC | 4 cut(s) | 122, 480, 601, 840 |
| BstMAI | GTCTC | 2 cut(s) | 857, 885 |
| BstMBI | GATC | 4 cut(s) | 119, 477, 598, 837 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 182, 546, 587, 815 |
| BstNI | CCWGG | 1 cut(s) | 269 |
| BstSCI | CCNGG | 1 cut(s) | 267 |
| BstSFI | CTRYAG | 1 cut(s) | 408 |
| BstX2I | RGATCY | 2 cut(s) | 119, 837 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 848 |
| BstYI | RGATCY | 2 cut(s) | 119, 837 |
| BsuRI | GGCC | 1 cut(s) | 641 |
| BtgI | CCRYGG | 1 cut(s) | 799 |
| BtgZI | GCGATG | 1 cut(s) | 347 |
| BtsCI | GGATG | 2 cut(s) | 141, 325 |
| BtsI | GCAGTG | 1 cut(s) | 197 |
| BtsIMutI | CAGTG | 2 cut(s) | 197, 910 |
| Cac8I | GCNNGC | 2 cut(s) | 443, 639 |
| Cfr13I | GGNCC | 1 cut(s) | 751 |
| Csp6I | GTAC | 2 cut(s) | 417, 857 |
| CviAII | CATG | 7 cut(s) | 146, 282, 481, 607, 800, 805, 848 |
| CviQI | GTAC | 2 cut(s) | 417, 857 |
| DdeI | CTNAG | 3 cut(s) | 572, 782, 889 |
| DpnI | GATC | 4 cut(s) | 121, 479, 600, 839 |
| DpnII | GATC | 4 cut(s) | 119, 477, 598, 837 |
| DraI | TTTAAA | 2 cut(s) | 529, 762 |
| Eco130I | CCWWGG | 1 cut(s) | 799 |
| Eco147I | AGGCCT | 1 cut(s) | 641 |
| Eco31I | GGTCTC | 1 cut(s) | 857 |
| Eco47I | GGWCC | 1 cut(s) | 751 |
| EcoRI | GAATTC | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 267 |
| EcoT14I | CCWWGG | 1 cut(s) | 799 |
| ErhI | CCWWGG | 1 cut(s) | 799 |
| FaeI | CATG | 7 cut(s) | 149, 285, 484, 610, 803, 808, 851 |
| FatI | CATG | 7 cut(s) | 145, 281, 480, 606, 799, 804, 847 |
| FauNDI | CATATG | 1 cut(s) | 207 |
| FbaI | TGATCA | 1 cut(s) | 477 |
| FokI | GGATG | 2 cut(s) | 128, 332 |
| FspBI | CTAG | 1 cut(s) | 860 |
| HaeIII | GGCC | 1 cut(s) | 641 |
| Hin1II | CATG | 7 cut(s) | 149, 285, 484, 610, 803, 808, 851 |
| HincII | GTYRAC | 1 cut(s) | 559 |
| HindII | GTYRAC | 1 cut(s) | 559 |
| HindIII | AAGCTT | 1 cut(s) | 443 |
| HinfI | GANTC | 3 cut(s) | 127, 628, 682 |
| HphI | GGTGA | 3 cut(s) | 236, 632, 788 |
| Hpy166II | GTNNAC | 1 cut(s) | 559 |
| Hpy188I | TCNGA | 3 cut(s) | 310, 433, 502 |
| Hpy188III | TCNNGA | 1 cut(s) | 492 |
| Hpy8I | GTNNAC | 1 cut(s) | 559 |
| HpyAV | CCTTC | 3 cut(s) | 65, 322, 539 |
| HpyCH4III | ACNGT | 3 cut(s) | 710, 731, 905 |
| HpyCH4V | TGCA | 5 cut(s) | 395, 410, 515, 540, 701 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 182, 546, 587, 815 |
| HpyF3I | CTNAG | 3 cut(s) | 572, 782, 889 |
| Hsp92II | CATG | 7 cut(s) | 149, 285, 484, 610, 803, 808, 851 |
| Ksp22I | TGATCA | 1 cut(s) | 477 |
| Kzo9I | GATC | 4 cut(s) | 119, 477, 598, 837 |
| LpnPI | CCDG | 9 cut(s) | 116, 207, 254, 281, 362, 623, 636, 671, 768 |
| MaeI | CTAG | 1 cut(s) | 860 |
| MaeIII | GTNAC | 4 cut(s) | 215, 224, 794, 868 |
| MalI | GATC | 4 cut(s) | 121, 479, 600, 839 |
| MboI | GATC | 4 cut(s) | 119, 477, 598, 837 |
| MboII | GAAGA | 3 cut(s) | 64, 440, 824 |
| MflI | RGATCY | 2 cut(s) | 119, 837 |
| MluCI | AATT | 2 cut(s) | 193, 937 |
| MlyI | GAGTC | 1 cut(s) | 691 |
| MnlI | CCTC | 2 cut(s) | 310, 581 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MseI | TTAA | 8 cut(s) | 252, 372, 528, 611, 644, 717, 761, 915 |
| MspR9I | CCNGG | 1 cut(s) | 269 |
| MvaI | CCWGG | 1 cut(s) | 269 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 182, 546, 587, 815 |
| NcoI | CCATGG | 1 cut(s) | 799 |
| NdeI | CATATG | 1 cut(s) | 207 |
| NdeII | GATC | 4 cut(s) | 119, 477, 598, 837 |
| NlaIII | CATG | 7 cut(s) | 149, 285, 484, 610, 803, 808, 851 |
| NlaIV | GGNNCC | 2 cut(s) | 753, 899 |
| NmuCI | GTSAC | 2 cut(s) | 224, 794 |
| NspV | TTCGAA | 1 cut(s) | 770 |
| PceI | AGGCCT | 1 cut(s) | 641 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 2 cut(s) | 127, 628 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 748, 805 |
| PleI | GAGTC | 1 cut(s) | 690 |
| PpsI | GAGTC | 1 cut(s) | 690 |
| Psp6I | CCWGG | 1 cut(s) | 267 |
| PspGI | CCWGG | 1 cut(s) | 267 |
| PspN4I | GGNNCC | 2 cut(s) | 753, 899 |
| PspPI | GGNCC | 1 cut(s) | 751 |
| PstI | CTGCAG | 1 cut(s) | 412 |
| PsuI | RGATCY | 2 cut(s) | 119, 837 |
| RsaI | GTAC | 2 cut(s) | 418, 858 |
| RsaNI | GTAC | 2 cut(s) | 417, 857 |
| SaqAI | TTAA | 8 cut(s) | 252, 372, 528, 611, 644, 717, 761, 915 |
| Sau3AI | GATC | 4 cut(s) | 119, 477, 598, 837 |
| Sau96I | GGNCC | 1 cut(s) | 751 |
| SchI | GAGTC | 1 cut(s) | 691 |
| ScrFI | CCNGG | 1 cut(s) | 269 |
| SfcI | CTRYAG | 1 cut(s) | 408 |
| SfuI | TTCGAA | 1 cut(s) | 770 |
| SinI | GGWCC | 1 cut(s) | 751 |
| Sse9I | AATT | 2 cut(s) | 193, 937 |
| SseBI | AGGCCT | 1 cut(s) | 641 |
| SsiI | CCGC | 1 cut(s) | 786 |
| SspMI | CTAG | 1 cut(s) | 860 |
| StuI | AGGCCT | 1 cut(s) | 641 |
| StyD4I | CCNGG | 1 cut(s) | 267 |
| StyI | CCWWGG | 1 cut(s) | 799 |
| TaaI | ACNGT | 3 cut(s) | 710, 731, 905 |
| TaqI | TCGA | 3 cut(s) | 32, 597, 770 |
| TasI | AATT | 2 cut(s) | 193, 937 |
| TfiI | GAWTC | 2 cut(s) | 127, 628 |
| Tru1I | TTAA | 8 cut(s) | 252, 372, 528, 611, 644, 717, 761, 915 |
| Tru9I | TTAA | 8 cut(s) | 252, 372, 528, 611, 644, 717, 761, 915 |
| TscAI | CASTG | 2 cut(s) | 204, 910 |
| TseFI | GTSAC | 2 cut(s) | 224, 794 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 794 |
| TspDTI | ATGAA | 5 cut(s) | 68, 194, 270, 350, 396 |
| TspRI | CASTG | 2 cut(s) | 204, 910 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 748, 805 |
| VpaK11BI | GGWCC | 1 cut(s) | 751 |
| XapI | RAATTY | 1 cut(s) | 193 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 891 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 860 |