Prupe.7G142000_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
15713653 .. 15715566
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G142000.1

Sequence Viewer

Length: 1914 bp
ATGCCTCAAAGAAATCATGTTTCTTTCAATGCGCTCATTGCGGCCTATTCCAGAGATTCAAGAAGTGCACTTTTGGCTTTTGAACTACTTAACAAAATGGGAAGTGAATGCCTTAGGCCAAATGCTTCGACTTTCACAAGCTTACTACAAGCGTCTTATACTCTTGAGGATTGGTTGGTTGGCTCTTTGGTTCATGCCAAGGTTGTGAAATTTGGTTTCTCGAATGATTTATGTGTTCAAACTGCTCTTCTTGGGATGTACTCCAACTGTGGAGATTTGGAATCTGCGAGGAAAGTTTTTGGGTGGATAGTTGATAAAGATGTTGTGGCTTGGAATTCTATGATTTTTGGGAACTTGAAGAATGATGAGACCAAGGAAGGGCTTCATCTCTTTGATGGCATGCTGAGGAGTGGAATTGTTCCTAGTCAATTCACATATTCAATGGTTTTGAATATGTGTAGCCGATTAAGATATTTTTGTCTGGGGAAACTCATACATGCCCGAGTCATAGTTTCAAGCACACTAACTGATTTGACTTTGCAAAATTCCCTGCTTGACATGTATTGCAATTCTGGTGACACCCGAGTAGCATTTAGTGTGTTCAGTGAAATGTACAACCCAGATTTGGTGTCATGGAACACAATGATTTCTGGGTATTCAGAACATGGGGATGGAGAGCTGGCCATGAATTTGTTTGCTCAGTTGAAGAAAATTTCTCTCCTCAAACCAGATGAGTATACTTTTGCAGCCATCATATCTGCAACAGGAACATACCTAGCTTCCGACTATGGTAAATCTCTTCACGGGCAAGTCACAAAAGCAGGATTTGAGAAAAGTGTTTTTGTAGGAACTACACTTGTGTCTATGTATTTCAAAAATGGTGAAACTGATGATGCTCAGAAGGTGTTCTATTCCATTTTGGATAAGGATGTCGTTCTCTGGACTGAGATGATCATGGGTCTTTCGAGATTGGCTGATGGGGAGAGTGCAATTAAGTTCTTTTCTGAAATGTGCCAAGCAGGCCATAAGATTGACAGCTTTTCTCTCAGTGGAGCTTTGAGTGCTTGTTCCGACCTTGCCATGTTAAAACAAGGTGAGATGATTCACTCTCAGGCTGTAAAAACAGGGTACGATGTTGAAATGTCTGTTTGTGGGAGTCTGGTGGATATGTATTCGAAAAATGGTAGCCTTCAAGCTGCTTATTCTATATTTTCCCAAGTTTCAGACCCTGATTTGAAATGCTGGAACTCAATGCTTGGGGGATACAGTCACCATGGCATGGCAGAGGAAGCATTGAAGCTGTTTTTTGAGATCGAAAAACATGGTCTCAGACCAGACCAAGTAACATTTCTGTCTGTGCTCTCAGCTTGCAACCACAGTGGTTTGGTTGAAGTAGGAAAGTTCTTGTGGAAATGTATGAAGGAAAACGGTATCACACCTGGGCTTAAGCACTACTCTTCCATGGTAAGTTTGTTAGGTCGAGCTCGATTATTAGATGAGGCAGAGGAGCTTATTAACAGTTCACCATTTAAGGAAGATAATCTTGAACTGTGGAGAACTTTGCTAAGCTCGTGTGTCATCAATAAAAATTTGAAAGTAGGAGTTCATGCAGCAGAGCAGGTTCTAAGTTTAGATGCAGAAGACAGTGCAACACTTGTCCTGCTGTCTAATCTCTATGCTGCTGCAGGAAAATGGGGTAGTGTGGTAGAAATGAGGAGAAAGATTAAAGTACTGACGCTGGAAAAGGATCCTGGACTAAGCTGGATTGAGGATAAGAATAATGTTCAGGTATTTTGTTCAGGTGTTCAATCAGAACAAGAGGTAGGTGAAGCCCAAGCTGCACTGCATTGGCTACAAGGAAACATGGTAAGATCACAAACAGATGAATCTGATGAACAGATGTATACTACATAA

Protein Analysis

638

Amino Acids

70.5

Weight (kDa)

5.35

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1609
AccB7I CCANNNNNTGG 1 cut(s) 1279
AccI GTMKAC 2 cut(s) 737, 1904
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 1742, 1755
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 6 cut(s) 209, 334, 544, 688, 711, 1588
AfaI GTAC 4 cut(s) 260, 614, 1130, 1731
AfiI CCNNNNNNNGG 3 cut(s) 378, 625, 1279
AflII CTTAAG 1 cut(s) 1445
AflIII ACRYGT 1 cut(s) 558
AjnI CCWGG 2 cut(s) 1438, 1750
AjuI GAANNNNNNNTTGG 2 cut(s) 1332, 1364
Alw21I GWGCWC 3 cut(s) 70, 1362, 1486
Alw26I GTCTC 2 cut(s) 362, 1331
Alw44I GTGCAC 1 cut(s) 66
AlwI GGATC 2 cut(s) 1742, 1755
AlwNI CAGNNNCTG 1 cut(s) 1229
Ama87I CYCGRG 2 cut(s) 501, 582
AoxI GGCC 4 cut(s) 42, 116, 681, 1021
ApaLI GTGCAC 1 cut(s) 66
ApeKI GCWGC 6 cut(s) 746, 1196, 1610, 1679, 1682, 1838
ApoI RAATTY 6 cut(s) 209, 334, 544, 688, 711, 1588
Asp700I GAANNNNTTC 2 cut(s) 381, 905
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 6 cut(s) 587, 893, 1106, 1262, 1515, 1838
AsuII TTCGAA 1 cut(s) 1175
AvaI CYCGRG 2 cut(s) 501, 582
AxyI CCTNAGG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 683
BamHI GGATCC 1 cut(s) 1747
BanII GRGCYC 1 cut(s) 1486
BauI CACGAG 1 cut(s) 1570
BbsI GAAGAC 1 cut(s) 1647
Bbv12I GWGCWC 3 cut(s) 70, 1362, 1486
BbvCI CCTCAGC 1 cut(s) 404
BbvI GCAGC 6 cut(s) 758, 1183, 1622, 1666, 1669, 1825
BccI CCATC 4 cut(s) 389, 665, 758, 971
BciT130I CCWGG 2 cut(s) 1440, 1752
BciVI GTATCC 1 cut(s) 1256
BclI TGATCA 1 cut(s) 951
BcoDI GTCTC 2 cut(s) 362, 1331
BfaI CTAG 2 cut(s) 423, 776
BfmI CTRYAG 1 cut(s) 1683
BfrI CTTAAG 1 cut(s) 1445
BfuAI ACCTGC 1 cut(s) 1609
BfuI GTATCC 1 cut(s) 1256
BglI GCCNNNNNGGC 1 cut(s) 1020
BisI GCNGC 7 cut(s) 42, 747, 1197, 1611, 1680, 1683, 1839
BlpI GCTNAGC 1 cut(s) 1565
BlsI GCNGC 7 cut(s) 43, 748, 1198, 1612, 1681, 1684, 1840
BmcAI AGTACT 1 cut(s) 1731
Bme1390I CCNGG 2 cut(s) 1440, 1752
BmeT110I CYCGRG 2 cut(s) 501, 582
BmiI GGNNCC 1 cut(s) 1749
BmrFI CCNGG 2 cut(s) 1440, 1752
BmsI GCATC 2 cut(s) 883, 1624
BpiI GAAGAC 1 cut(s) 1647
Bpu10I CCTNAGC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 1565
Bpu14I TTCGAA 1 cut(s) 1175
BpuEI CTTGAG 1 cut(s) 185
BsaI GGTCTC 2 cut(s) 362, 1331
BsaJI CCNNGG 5 cut(s) 198, 372, 1273, 1439, 1461
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 625, 1279
Bse21I CCTNAGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 36
BseBI CCWGG 2 cut(s) 1440, 1752
BseDI CCNNGG 5 cut(s) 198, 372, 1273, 1439, 1461
BseGI GGATG 3 cut(s) 261, 676, 934
BseLI CCNNNNNNNGG 3 cut(s) 378, 625, 1279
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 8 cut(s) 395, 713, 911, 936, 1060, 1124, 1342, 1377
BseRI GAGGAG 4 cut(s) 421, 710, 1520, 1729
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 6 cut(s) 758, 1183, 1622, 1666, 1669, 1825
BsgI GTGCAG 1 cut(s) 1824
BshFI GGCC 4 cut(s) 44, 118, 683, 1023
BsiHKAI GWGCWC 3 cut(s) 70, 1362, 1486
BsiHKCI CYCGRG 2 cut(s) 501, 582
BslI CCNNNNNNNGG 3 cut(s) 378, 625, 1279
BsmAI GTCTC 2 cut(s) 362, 1331
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 4 cut(s) 44, 118, 683, 1023
Bso31I GGTCTC 2 cut(s) 362, 1331
BsoBI CYCGRG 2 cut(s) 501, 582
Bsp119I TTCGAA 1 cut(s) 1175
Bsp1286I GDGCHC 3 cut(s) 70, 1362, 1486
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 4 cut(s) 951, 1311, 1747, 1871
Bsp1720I GCTNAGC 1 cut(s) 1565
Bsp19I CCATGG 2 cut(s) 1273, 1461
BspACI CCGC 1 cut(s) 41
BspANI GGCC 4 cut(s) 44, 118, 683, 1023
BspCNI CTCAG 8 cut(s) 396, 712, 910, 937, 1059, 1123, 1341, 1376
BspLI GGNNCC 1 cut(s) 1749
BspMAI CTGCAG 1 cut(s) 1687
BspMI ACCTGC 1 cut(s) 1609
BspPI GGATC 2 cut(s) 1742, 1755
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 1175
BspTI CTTAAG 1 cut(s) 1445
BspTNI GGTCTC 2 cut(s) 362, 1331
BsrDI GCAATG 1 cut(s) 36
BsrGI TGTACA 1 cut(s) 612
BssECI CCNNGG 5 cut(s) 198, 372, 1273, 1439, 1461
BssMI GATC 4 cut(s) 951, 1311, 1747, 1871
BssNAI GTATAC 2 cut(s) 738, 1905
BssSI CACGAG 1 cut(s) 1570
BssT1I CCWWGG 4 cut(s) 198, 372, 1273, 1461
Bst1107I GTATAC 2 cut(s) 738, 1905
Bst2BI CACGAG 1 cut(s) 1570
Bst2UI CCWGG 2 cut(s) 1440, 1752
Bst4CI ACNGT 7 cut(s) 269, 1268, 1379, 1430, 1520, 1551, 1646
Bst6I CTCTTC 3 cut(s) 252, 804, 1462
BstAFI CTTAAG 1 cut(s) 1445
BstAUI TGTACA 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 1175
BstC8I GCNNGC 4 cut(s) 401, 681, 1021, 1369
BstDSI CCRYGG 2 cut(s) 1273, 1461
BstF5I GGATG 3 cut(s) 261, 676, 934
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 4 cut(s) 954, 1314, 1750, 1874
BstMAI GTCTC 2 cut(s) 362, 1331
BstMBI GATC 4 cut(s) 951, 1311, 1747, 1871
BstMWI GCNNNNNNNGC 6 cut(s) 38, 74, 1020, 1061, 1289, 1838
BstNI CCWGG 2 cut(s) 1440, 1752
BstNSI RCATGY 3 cut(s) 403, 500, 562
BstSCI CCNGG 2 cut(s) 1438, 1750
BstSFI CTRYAG 1 cut(s) 1683
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 6 cut(s) 758, 1183, 1622, 1666, 1669, 1825
BstV2I GAAGAC 1 cut(s) 1647
BstX2I RGATCY 1 cut(s) 1747
BstYI RGATCY 1 cut(s) 1747
BstZ17I GTATAC 2 cut(s) 738, 1905
Bsu36I CCTNAGG 1 cut(s) 113
BsuI GTATCC 1 cut(s) 1256
BsuRI GGCC 4 cut(s) 44, 118, 683, 1023
BtgI CCRYGG 2 cut(s) 1273, 1461
BtsCI GGATG 3 cut(s) 261, 676, 934
BtsI GCAGTG 1 cut(s) 1841
BtsIMutI CAGTG 5 cut(s) 610, 1054, 1384, 1651, 1841
BveI ACCTGC 1 cut(s) 1609
Cac8I GCNNGC 4 cut(s) 401, 681, 1021, 1369
CaiI CAGNNNCTG 1 cut(s) 1229
CfoI GCGC 1 cut(s) 34
CseI GACGC 2 cut(s) 141, 1744
Csp6I GTAC 4 cut(s) 259, 613, 1129, 1730
CspCI CAANNNNNGTGG 2 cut(s) 1360, 1395
CviQI GTAC 4 cut(s) 259, 613, 1129, 1730
DpnI GATC 4 cut(s) 953, 1313, 1749, 1873
DpnII GATC 4 cut(s) 951, 1311, 1747, 1871
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 3 cut(s) 252, 804, 1462
EarI CTCTTC 3 cut(s) 252, 804, 1462
Ecl136II GAGCTC 1 cut(s) 1484
Eco130I CCWWGG 4 cut(s) 198, 372, 1273, 1461
Eco24I GRGCYC 1 cut(s) 1486
Eco31I GGTCTC 2 cut(s) 362, 1331
Eco53kI GAGCTC 1 cut(s) 1484
Eco81I CCTNAGG 1 cut(s) 113
Eco88I CYCGRG 2 cut(s) 501, 582
EcoICRI GAGCTC 1 cut(s) 1484
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 1438, 1750
EcoT14I CCWWGG 4 cut(s) 198, 372, 1273, 1461
EcoT38I GRGCYC 1 cut(s) 1486
ErhI CCWWGG 4 cut(s) 198, 372, 1273, 1461
FalI AAGNNNNNCTT 2 cut(s) 1527, 1559
FbaI TGATCA 1 cut(s) 951
FblI GTMKAC 2 cut(s) 737, 1904
Fnu4HI GCNGC 7 cut(s) 42, 747, 1197, 1611, 1680, 1683, 1839
FokI GGATG 3 cut(s) 268, 683, 941
FriOI GRGCYC 1 cut(s) 1486
Fsp4HI GCNGC 7 cut(s) 42, 747, 1197, 1611, 1680, 1683, 1839
FspBI CTAG 2 cut(s) 423, 776
GlaI GCGC 1 cut(s) 33
GluI GCNGC 7 cut(s) 42, 747, 1197, 1611, 1680, 1683, 1839
HaeIII GGCC 4 cut(s) 44, 118, 683, 1023
HgaI GACGC 2 cut(s) 141, 1744
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 6 cut(s) 56, 281, 504, 1102, 1156, 1886
HphI GGTGA 6 cut(s) 587, 893, 1106, 1262, 1515, 1838
Hpy166II GTNNAC 4 cut(s) 68, 738, 1523, 1905
Hpy188I TCNGA 9 cut(s) 661, 784, 900, 1006, 1072, 1225, 1331, 1813, 1891
Hpy188III TCNNGA 7 cut(s) 51, 60, 164, 220, 940, 966, 1544
Hpy8I GTNNAC 4 cut(s) 68, 738, 1523, 1905
HpyAV CCTTC 4 cut(s) 371, 895, 1199, 1414
HpyCH4III ACNGT 7 cut(s) 269, 1268, 1379, 1430, 1520, 1551, 1646
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 74, 1020, 1061, 1289, 1838
HspAI GCGC 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 951
Kzo9I GATC 4 cut(s) 951, 1311, 1747, 1871
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 1052, 1507
Lsp1109I GCAGC 6 cut(s) 758, 1183, 1622, 1666, 1669, 1825
LweI GCATC 2 cut(s) 883, 1624
MaeI CTAG 2 cut(s) 423, 776
MaeIII GTNAC 4 cut(s) 575, 811, 1268, 1342
MalI GATC 4 cut(s) 953, 1313, 1749, 1873
MboI GATC 4 cut(s) 951, 1311, 1747, 1871
MboII GAAGA 7 cut(s) 239, 370, 718, 791, 1449, 1547, 1652
MflI RGATCY 1 cut(s) 1747
MhlI GDGCHC 3 cut(s) 70, 1362, 1486
MlsI TGGCCA 1 cut(s) 683
MluNI TGGCCA 1 cut(s) 683
MlyI GAGTC 2 cut(s) 513, 1165
MmeI TCCRAC 3 cut(s) 288, 807, 1095
Mox20I TGGCCA 1 cut(s) 683
MroXI GAANNNNTTC 2 cut(s) 381, 905
MscI TGGCCA 1 cut(s) 683
MseI TTAA 8 cut(s) 90, 467, 993, 1085, 1446, 1515, 1530, 1725
MslI CAYNNNNRTG 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 683
MspCI CTTAAG 1 cut(s) 1445
MspR9I CCNGG 2 cut(s) 1440, 1752
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 2 cut(s) 1440, 1752
MwoI GCNNNNNNNGC 6 cut(s) 38, 74, 1020, 1061, 1289, 1838
NcoI CCATGG 2 cut(s) 1273, 1461
NdeII GATC 4 cut(s) 951, 1311, 1747, 1871
NlaIV GGNNCC 1 cut(s) 1749
NmuCI GTSAC 3 cut(s) 575, 811, 1268
NspI RCATGY 3 cut(s) 403, 500, 562
NspV TTCGAA 1 cut(s) 1175
PaeI GCATGC 1 cut(s) 403
PciI ACATGT 1 cut(s) 558
PciSI GCTCTTC 1 cut(s) 252
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 381, 905
PfeI GAWTC 4 cut(s) 56, 281, 1102, 1886
PflMI CCANNNNNTGG 1 cut(s) 1279
PfoI TCCNGGA 1 cut(s) 1750
PkrI GCNGC 7 cut(s) 43, 748, 1198, 1612, 1681, 1684, 1840
PleI GAGTC 2 cut(s) 512, 1164
PpsI GAGTC 2 cut(s) 512, 1164
PscI ACATGT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 1486
Psp6I CCWGG 2 cut(s) 1438, 1750
PspGI CCWGG 2 cut(s) 1438, 1750
PspN4I GGNNCC 1 cut(s) 1749
PstI CTGCAG 1 cut(s) 1687
PstNI CAGNNNCTG 1 cut(s) 1229
PsuI RGATCY 1 cut(s) 1747
RsaI GTAC 4 cut(s) 260, 614, 1130, 1731
RsaNI GTAC 4 cut(s) 259, 613, 1129, 1730
RseI CAYNNNNRTG 1 cut(s) 669
SacI GAGCTC 1 cut(s) 1486
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 8 cut(s) 90, 467, 993, 1085, 1446, 1515, 1530, 1725
SatI GCNGC 7 cut(s) 42, 747, 1197, 1611, 1680, 1683, 1839
Sau3AI GATC 4 cut(s) 951, 1311, 1747, 1871
ScaI AGTACT 1 cut(s) 1731
SchI GAGTC 2 cut(s) 513, 1165
ScrFI CCNGG 2 cut(s) 1440, 1752
SduI GDGCHC 3 cut(s) 70, 1362, 1486
SfaNI GCATC 2 cut(s) 883, 1624
SfcI CTRYAG 1 cut(s) 1683
SfuI TTCGAA 1 cut(s) 1175
SmiMI CAYNNNNRTG 1 cut(s) 669
SmlI CTYRAG 2 cut(s) 164, 1445
SmoI CTYRAG 2 cut(s) 164, 1445
SphI GCATGC 1 cut(s) 403
SsiI CCGC 1 cut(s) 41
SspMI CTAG 2 cut(s) 423, 776
SstI GAGCTC 1 cut(s) 1486
StyD4I CCNGG 2 cut(s) 1438, 1750
StyI CCWWGG 4 cut(s) 198, 372, 1273, 1461
TaaI ACNGT 7 cut(s) 269, 1268, 1379, 1430, 1520, 1551, 1646
TaqI TCGA 7 cut(s) 128, 221, 965, 1175, 1314, 1480, 1486
TatI WGTACW 3 cut(s) 258, 612, 1729
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 4 cut(s) 56, 281, 1102, 1886
Tru1I TTAA 8 cut(s) 90, 467, 993, 1085, 1446, 1515, 1530, 1725
Tru9I TTAA 8 cut(s) 90, 467, 993, 1085, 1446, 1515, 1530, 1725
TscAI CASTG 5 cut(s) 610, 1054, 1384, 1651, 1848
TseFI GTSAC 3 cut(s) 575, 811, 1268
TseI GCWGC 6 cut(s) 746, 1196, 1610, 1679, 1682, 1838
Tsp45I GTSAC 3 cut(s) 575, 811, 1268
TspDTI ATGAA 7 cut(s) 182, 374, 701, 1433, 1595, 1899, 1908
TspRI CASTG 5 cut(s) 610, 1054, 1384, 1651, 1848
Van91I CCANNNNNTGG 1 cut(s) 1279
Vha464I CTTAAG 1 cut(s) 1445
VneI GTGCAC 1 cut(s) 66
XapI RAATTY 6 cut(s) 209, 334, 544, 688, 711, 1588
XceI RCATGY 3 cut(s) 403, 500, 562
XmiI GTMKAC 2 cut(s) 737, 1904
XmnI GAANNNNTTC 2 cut(s) 381, 905
XspI CTAG 2 cut(s) 423, 776
ZrmI AGTACT 1 cut(s) 1731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.