Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

18024625 .. 18025943

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g23890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTACTGGCGATGTGGATCGCTTGGGGACTCGCGGAAGGTGTTTGACAAAATGCCTCAACGAAATCTGGTTTCATTCAATGCGCTCATTGCGGCCTATTCCCGGGACTCAAACAGTGCGATTTTGGCTTGTGAGCTATTTAACGAAATGGGAGTTGAATGTCTTAGGCCAAATGGTTCGACTTTCACGAGCTTACTGCAGGCGTTTTATACTCTTGAGGACCGGTTGGTTGGCTCTTTGATTCATGCCCAAGTTCTGAAGTTTGGGTTCTTGAGTGATGTTTGTCTTCAAACTGCTTTACTTGGGATGTACTCCAACTGTAGGGATTTGGAATCCGCGAGGAAAGTTTTTGGCGGGATGGTTGATAAAGATGTTGTTGCTTGGAATTCAATGATTTTTGGGAATTTGAAGAATGATGAGACAGCGGAAGGGCTTTCTCTCTTTGATGGCATGTTGAGGACTGGAATTGTTCCTACTCAATTCACATATTCAATGGTCTTGACTGCTTGCAGCAGATTAAGATATTTTTATCTGGGGAAACTCATCCATGCCAGAGTCATAGTTTCAAAAACGCTAGCTGATTTAGCTTTGCAGAATTCCTTGCTTGATATGTATTGCAATTCTGGTGACACCCGAGTAGCATTTGGCGTGTTTAAGGGAATGTGCAACCCGGATTTGGTCTCTTGGAACACAATGATTTCTGGGTGTTCGGAACATGGTGATGGTGAGAAGGCCATGAATTTATTTGTCCAGTTGAAGAAAACATCGTTTCTTAAACCAGATGAGTATACTTTTGCAGCCATCATATCCGCAACAGGCACAGATCTAGTTTCCAACTATGGCAAGTCACTTCACGGACAGGTCACAAAAGCAGGATTTGATAAGAGCACTTTTGTAGGAACTACACTAGTGTCTATGTATTTTCGAAAGGCTGAATCAGATGATGCTCAGAAGGTGTTTTATTCCATCATAAAGAAGGATGTTGTTCTATGGACTGAGATGATCATGGGTTTTTCGAGATTGGCTGATGGGGAGAGTGCAATTAAGTTCTTTTATGAAATGTGCCAGGAAGGCCATAAGATTGACAGCTTTGCTCTCAGTGGAGTGTTGAGTGCTTGTTCCGACCTTGCCATGCTAAAACAAGGTGAGATGATTCACTCATGGGCCGTGAAAACTGGGCACAATGTTGAAATCTGCTTATTCTATATTTTCCCAAGTTTCGGACCCCGATTTGAAATGCTGGAACTCAATGCTCGGAGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

422

Amino Acids

46.95

Weight (kDa)

6.66

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 69	5.7e-07	PPR repeat family
PPR_2	PF13041	123 - 171	2e-10	PPR repeat family
PPR_2	PF13041	224 - 271	6.2e-11	PPR repeat family
PPR	PF01535	227 - 254	8.2e-07	PPR repeat
PPR_2	PF13041	326 - 374	3.5e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	788
AccII	CGCG	2 cut(s)	34, 338
AciI	CCGC	6 cut(s)	34, 92, 336, 354, 425, 810
AclWI	GGATC	1 cut(s)	25
AcsI	RAATTY	4 cut(s)	385, 403, 595, 739
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	2 cut(s)	5, 311
AfiI	CCNNNNNNNGG	4 cut(s)	102, 321, 676, 1220
AgeI	ACCGGT	1 cut(s)	222
AhlI	ACTAGT	1 cut(s)	907
AjnI	CCWGG	1 cut(s)	1065
AluBI	AGCT	5 cut(s)	136, 192, 578, 587, 1089
AluI	AGCT	5 cut(s)	136, 192, 578, 587, 1089
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	2 cut(s)	413, 685
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	2 cut(s)	102, 633
AoxI	GGCC	5 cut(s)	93, 167, 732, 1072, 1164
ApeKI	GCWGC	2 cut(s)	510, 797
ApoI	RAATTY	4 cut(s)	385, 403, 595, 739
AsiGI	ACCGGT	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	3 cut(s)	220, 1164, 1223
AsuC2I	CCSGG	3 cut(s)	103, 104, 671
AsuHPI	GGTGA	4 cut(s)	638, 731, 737, 1157
AsuII	TTCGAA	1 cut(s)	925
AsuNHI	GCTAGC	1 cut(s)	574
AvaI	CYCGRG	2 cut(s)	102, 633
AvaII	GGWCC	2 cut(s)	220, 1223
BaeGI	GKGCMC	1 cut(s)	1182
BauI	CACGAG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	890
BbvI	GCAGC	2 cut(s)	522, 809
BccI	CCATC	6 cut(s)	352, 440, 716, 809, 974, 1022
BceAI	ACGGC	1 cut(s)	1151
BcgI	CGANNNNNNTGC	2 cut(s)	178, 212
BciT130I	CCWGG	1 cut(s)	1067
BclI	TGATCA	1 cut(s)	1002
BcnI	CCSGG	3 cut(s)	103, 104, 671
BcoDI	GTCTC	2 cut(s)	413, 685
BcuI	ACTAGT	1 cut(s)	907
BfaI	CTAG	3 cut(s)	575, 827, 908
BfmI	CTRYAG	2 cut(s)	197, 319
BglI	GCCNNNNNGGC	1 cut(s)	1071
BglII	AGATCT	1 cut(s)	823
BisI	GCNGC	3 cut(s)	93, 511, 798
BlsI	GCNGC	3 cut(s)	94, 512, 799
Bme1390I	CCNGG	4 cut(s)	103, 104, 671, 1067
Bme18I	GGWCC	2 cut(s)	220, 1223
BmeT110I	CYCGRG	2 cut(s)	102, 633
BmgT120I	GGNCC	3 cut(s)	220, 1164, 1223
BmiI	GGNNCC	1 cut(s)	1225
BmrFI	CCNGG	4 cut(s)	103, 104, 671, 1067
BmrI	ACTGGG	1 cut(s)	1185
BmsI	GCATC	1 cut(s)	934
BmtI	GCTAGC	1 cut(s)	578
BmuI	ACTGGG	1 cut(s)	1185
BpiI	GAAGAC	1 cut(s)	278
Bpu14I	TTCGAA	1 cut(s)	925
BpuEI	CTTGAG	2 cut(s)	236, 292
BpuMI	CCSGG	3 cut(s)	103, 104, 671
BsaBI	GATNNNNATC	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	685
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 321, 676, 1220
Bse118I	RCCGGY	1 cut(s)	222
Bse1I	ACTGG	4 cut(s)	11, 466, 751, 1180
Bse3DI	GCAATG	1 cut(s)	87
Bse8I	GATNNNNATC	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	1067
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	4 cut(s)	312, 363, 543, 985
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	4 cut(s)	102, 321, 676, 1220
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	3 cut(s)	962, 987, 1111
BseNI	ACTGG	4 cut(s)	11, 466, 751, 1180
BseSI	GKGCMC	1 cut(s)	1182
BseXI	GCAGC	2 cut(s)	522, 809
Bsh1236I	CGCG	2 cut(s)	34, 338
BshFI	GGCC	5 cut(s)	95, 169, 734, 1074, 1166
BshTI	ACCGGT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	890
BsiHKCI	CYCGRG	2 cut(s)	102, 633
BsiSI	CCGG	3 cut(s)	103, 223, 671
BslFI	GGGAC	2 cut(s)	41, 119
BslI	CCNNNNNNNGG	4 cut(s)	102, 321, 676, 1220
BsmAI	GTCTC	2 cut(s)	413, 685
BsmFI	GGGAC	2 cut(s)	41, 119
BsnI	GGCC	5 cut(s)	95, 169, 734, 1074, 1166
Bso31I	GGTCTC	1 cut(s)	685
BsoBI	CYCGRG	2 cut(s)	102, 633
Bsp119I	TTCGAA	1 cut(s)	925
Bsp1286I	GDGCHC	2 cut(s)	890, 1182
Bsp143I	GATC	3 cut(s)	17, 823, 1002
BspACI	CCGC	6 cut(s)	34, 92, 336, 354, 425, 810
BspANI	GGCC	5 cut(s)	95, 169, 734, 1074, 1166
BspCNI	CTCAG	3 cut(s)	961, 988, 1110
BspFNI	CGCG	2 cut(s)	34, 338
BspLI	GGNNCC	1 cut(s)	1225
BspMAI	CTGCAG	1 cut(s)	201
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	1 cut(s)	25
BspT104I	TTCGAA	1 cut(s)	925
BspTNI	GGTCTC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	222
BsrI	ACTGG	4 cut(s)	11, 466, 751, 1180
BssAI	RCCGGY	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	17, 823, 1002
BssNAI	GTATAC	1 cut(s)	789
BssSI	CACGAG	1 cut(s)	187
Bst1107I	GTATAC	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	2 cut(s)	116, 320
BstBI	TTCGAA	1 cut(s)	925
BstC8I	GCNNGC	3 cut(s)	201, 508, 576
BstDEI	CTNAG	4 cut(s)	164, 948, 996, 1097
BstF5I	GGATG	4 cut(s)	312, 363, 543, 985
BstFNI	CGCG	2 cut(s)	34, 338
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	3 cut(s)	20, 826, 1005
BstMAI	GTCTC	2 cut(s)	413, 685
BstMBI	GATC	3 cut(s)	17, 823, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 125, 584, 1071
BstNI	CCWGG	1 cut(s)	1067
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	4 cut(s)	101, 102, 669, 1065
BstSFI	CTRYAG	2 cut(s)	197, 319
BstSLI	GKGCMC	1 cut(s)	1182
BstUI	CGCG	2 cut(s)	34, 338
BstV1I	GCAGC	2 cut(s)	522, 809
BstV2I	GAAGAC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	823
BstYI	RGATCY	1 cut(s)	823
BstZ17I	GTATAC	1 cut(s)	789
BsuRI	GGCC	5 cut(s)	95, 169, 734, 1074, 1166
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	4 cut(s)	312, 363, 543, 985
BtsIMutI	CAGTG	2 cut(s)	121, 1105
Cac8I	GCNNGC	3 cut(s)	201, 508, 576
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	220, 1164, 1223
Cfr9I	CCCGGG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	4, 310
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	8 cut(s)	245, 451, 548, 716, 736, 1006, 1132, 1161
CviQI	GTAC	2 cut(s)	4, 310
DdeI	CTNAG	4 cut(s)	164, 948, 996, 1097
DpnI	GATC	3 cut(s)	19, 825, 1004
DpnII	GATC	3 cut(s)	17, 823, 1002
Eco31I	GGTCTC	1 cut(s)	685
Eco47I	GGWCC	2 cut(s)	220, 1223
Eco57I	CTGAAG	1 cut(s)	278
Eco88I	CYCGRG	2 cut(s)	102, 633
EcoRI	GAATTC	2 cut(s)	385, 595
EcoRII	CCWGG	1 cut(s)	1065
FaeI	CATG	8 cut(s)	248, 454, 551, 719, 739, 1009, 1135, 1164
FaqI	GGGAC	2 cut(s)	41, 119
FatI	CATG	8 cut(s)	244, 450, 547, 715, 735, 1005, 1131, 1160
FauI	CCCGC	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	1002
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	3 cut(s)	93, 511, 798
FokI	GGATG	4 cut(s)	319, 370, 530, 992
Fsp4HI	GCNGC	3 cut(s)	93, 511, 798
FspBI	CTAG	3 cut(s)	575, 827, 908
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	3 cut(s)	93, 511, 798
HaeIII	GGCC	5 cut(s)	95, 169, 734, 1074, 1166
HapII	CCGG	3 cut(s)	103, 223, 671
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	8 cut(s)	248, 454, 551, 719, 739, 1009, 1135, 1164
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	7 cut(s)	29, 107, 241, 332, 555, 935, 1153
HpaII	CCGG	3 cut(s)	103, 223, 671
HphI	GGTGA	4 cut(s)	638, 731, 737, 1157
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188I	TCNGA	7 cut(s)	258, 712, 940, 951, 1123, 1223, 1257
Hpy188III	TCNNGA	5 cut(s)	187, 215, 271, 499, 1017
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	6 cut(s)	31, 422, 724, 946, 970, 1064
HpyCH4III	ACNGT	2 cut(s)	116, 320
HpyCH4V	TGCA	7 cut(s)	199, 510, 592, 618, 666, 797, 1040
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 125, 584, 1071
HpyF3I	CTNAG	4 cut(s)	164, 948, 996, 1097
Hsp92II	CATG	8 cut(s)	248, 454, 551, 719, 739, 1009, 1135, 1164
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	1002
Kzo9I	GATC	3 cut(s)	17, 823, 1002
Lsp1109I	GCAGC	2 cut(s)	522, 809
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	3 cut(s)	575, 827, 908
MaeIII	GTNAC	3 cut(s)	626, 846, 862
MalI	GATC	3 cut(s)	19, 825, 1004
MboI	GATC	3 cut(s)	17, 823, 1002
MboII	GAAGA	3 cut(s)	278, 421, 769
MflI	RGATCY	1 cut(s)	823
MhlI	GDGCHC	2 cut(s)	890, 1182
MluCI	AATT	8 cut(s)	385, 403, 465, 479, 595, 619, 739, 1041
MlyI	GAGTC	3 cut(s)	23, 101, 564
MmeI	TCCRAC	3 cut(s)	339, 858, 1146
MnlI	CCTC	5 cut(s)	66, 211, 333, 450, 1251
MseI	TTAA	5 cut(s)	141, 518, 654, 774, 1044
MslI	CAYNNNNRTG	1 cut(s)	720
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	103, 223, 671
MspR9I	CCNGG	4 cut(s)	103, 104, 671, 1067
MvaI	CCWGG	1 cut(s)	1067
MvnI	CGCG	2 cut(s)	34, 338
MwoI	GCNNNNNNNGC	4 cut(s)	89, 125, 584, 1071
NciI	CCSGG	3 cut(s)	103, 104, 671
NdeII	GATC	3 cut(s)	17, 823, 1002
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	8 cut(s)	248, 454, 551, 719, 739, 1009, 1135, 1164
NlaIV	GGNNCC	1 cut(s)	1225
NmuCI	GTSAC	3 cut(s)	626, 846, 862
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	925
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PfeI	GAWTC	4 cut(s)	241, 332, 935, 1153
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	94, 512, 799
PleI	GAGTC	3 cut(s)	23, 101, 563
PpsI	GAGTC	3 cut(s)	23, 101, 563
Psp6I	CCWGG	1 cut(s)	1065
PspGI	CCWGG	1 cut(s)	1065
PspN4I	GGNNCC	1 cut(s)	1225
PspPI	GGNCC	3 cut(s)	220, 1164, 1223
PstI	CTGCAG	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	823
RsaI	GTAC	2 cut(s)	5, 311
RsaNI	GTAC	2 cut(s)	4, 310
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	5 cut(s)	141, 518, 654, 774, 1044
SatI	GCNGC	3 cut(s)	93, 511, 798
Sau3AI	GATC	3 cut(s)	17, 823, 1002
Sau96I	GGNCC	3 cut(s)	220, 1164, 1223
SchI	GAGTC	3 cut(s)	23, 101, 564
ScrFI	CCNGG	4 cut(s)	103, 104, 671, 1067
SduI	GDGCHC	2 cut(s)	890, 1182
SfaNI	GCATC	1 cut(s)	934
SfcI	CTRYAG	2 cut(s)	197, 319
SfuI	TTCGAA	1 cut(s)	925
SinI	GGWCC	2 cut(s)	220, 1223
SmaI	CCCGGG	1 cut(s)	104
SmiMI	CAYNNNNRTG	1 cut(s)	720
SmlI	CTYRAG	2 cut(s)	215, 271
SmoI	CTYRAG	2 cut(s)	215, 271
SpeI	ACTAGT	1 cut(s)	907
Sse9I	AATT	8 cut(s)	385, 403, 465, 479, 595, 619, 739, 1041
SsiI	CCGC	6 cut(s)	34, 92, 336, 354, 425, 810
SspMI	CTAG	3 cut(s)	575, 827, 908
StyD4I	CCNGG	4 cut(s)	101, 102, 669, 1065
TaaI	ACNGT	2 cut(s)	116, 320
TaqI	TCGA	3 cut(s)	179, 925, 1016
TasI	AATT	8 cut(s)	385, 403, 465, 479, 595, 619, 739, 1041
TatI	WGTACW	2 cut(s)	3, 309
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	4 cut(s)	241, 332, 935, 1153
Tru1I	TTAA	5 cut(s)	141, 518, 654, 774, 1044
Tru9I	TTAA	5 cut(s)	141, 518, 654, 774, 1044
TscAI	CASTG	2 cut(s)	121, 1105
TseFI	GTSAC	3 cut(s)	626, 846, 862
TseI	GCWGC	2 cut(s)	510, 797
Tsp45I	GTSAC	3 cut(s)	626, 846, 862
TspDTI	ATGAA	4 cut(s)	63, 233, 752, 1071
TspGWI	ACGGA	1 cut(s)	870
TspMI	CCCGGG	1 cut(s)	102
TspRI	CASTG	2 cut(s)	121, 1105
VpaK11BI	GGWCC	2 cut(s)	220, 1223
XapI	RAATTY	4 cut(s)	385, 403, 595, 739
XceI	RCATGY	1 cut(s)	454
XmaI	CCCGGG	1 cut(s)	102
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	3 cut(s)	575, 827, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.