Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

20777819 .. 20778397

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGATCATGGGTTATTCGAGATTGGCTGATGGGGAGAGTGCAATTAAGTTCTTCAAAGAAATGTGCAAGGAAAGCCTTAAGGTTGACAACTTTGCTCTGAGTGGAGCTTTGAGTGCTTGTTCCGACCTGGCCATGTTAAAACAAGGTGAGATGATTCACTCGCAAGCCTTAAAAACAGGATTTGATGTTGAAATGTCTGTATGCGGGAGTCTGGTGGATATGTATGCAAAAAACGGTTGCCTTGAATCTGCTTATTGTATATTTTCTCAAGTTGTGGAGCCTGATTTGAAATGTTGGAACTCGATGCTTGGGGGATATAGTCAACATGGCATGGCAGAAGAAGCATTGAAGCTCTTCTTTGAGATCCAAAAACATGGTCTCGTACCAGACCAAGTAACATTTCTGTCTCTACTCTCAGCTTGCAACCACAGTGGGTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGTATCCCACCTGGACCTAAGCACTGCTCTTGCATGGTTAGTTTGTTAAGTCGAGCTCGTATACTGAATGAGGCAGAGGAACTTATTATCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

192

Amino Acids

21.09

Weight (kDa)

5.54

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	94 - 141	1.3e-11	PPR repeat family
PPR	PF01535	98 - 127	1.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	541
AciI	CCGC	1 cut(s)	204
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	1 cut(s)	384
AflII	CTTAAG	1 cut(s)	77
AgsI	TTSAA	6 cut(s)	55, 191, 245, 289, 349, 443
AjnI	CCWGG	2 cut(s)	126, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	107, 352, 419, 536
AluI	AGCT	4 cut(s)	107, 352, 419, 536
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	383, 411
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	129
ArsI	GACNNNNNNTTYG	2 cut(s)	361, 393
Asp700I	GAANNNNTTC	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	494
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	538
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	2 cut(s)	128, 492
BciVI	GTATCC	1 cut(s)	494
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	383, 411
BfrI	CTTAAG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	494
Bme1390I	CCNGG	2 cut(s)	128, 492
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	128, 492
BmsI	GCATC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	498
BpuEI	CTTGAG	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	383
BseBI	CCWGG	2 cut(s)	128, 492
BseMII	CTCAG	2 cut(s)	89, 429
BshFI	GGCC	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	383, 411
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	3, 363
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	90, 428
BspLI	GGNNCC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	358
BspQI	GCTCTTC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	77
BspTNI	GGTCTC	1 cut(s)	383
BssMI	GATC	2 cut(s)	3, 363
BssNAI	GTATAC	1 cut(s)	542
Bst1107I	GTATAC	1 cut(s)	542
Bst2UI	CCWGG	2 cut(s)	128, 492
Bst4CI	ACNGT	2 cut(s)	236, 431
Bst6I	CTCTTC	1 cut(s)	359
BstAFI	CTTAAG	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	165, 421
BstDEI	CTNAG	3 cut(s)	98, 415, 498
BstKTI	GATC	2 cut(s)	6, 366
BstMAI	GTCTC	2 cut(s)	383, 411
BstMBI	GATC	2 cut(s)	3, 363
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 113, 341
BstNI	CCWGG	2 cut(s)	128, 492
BstSCI	CCNGG	2 cut(s)	126, 490
BstX2I	RGATCY	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	363
BstZ17I	GTATAC	1 cut(s)	542
BsuI	GTATCC	1 cut(s)	494
BsuRI	GGCC	1 cut(s)	131
BtsI	GCAGTG	1 cut(s)	502
BtsIMutI	CAGTG	2 cut(s)	436, 502
Cac8I	GCNNGC	2 cut(s)	165, 421
Cfr13I	GGNCC	1 cut(s)	494
Csp6I	GTAC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	6 cut(s)	7, 133, 326, 331, 374, 514
CviJI	RGCY	9 cut(s)	26, 75, 107, 131, 167, 280, 352, 419, 536
CviKI_1	RGCY	9 cut(s)	26, 75, 107, 131, 167, 280, 352, 419, 536
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	3 cut(s)	98, 415, 498
DpnI	GATC	2 cut(s)	5, 365
DpnII	GATC	2 cut(s)	3, 363
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	538
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	126, 490
EcoT38I	GRGCYC	1 cut(s)	538
FaeI	CATG	6 cut(s)	10, 136, 329, 334, 377, 517
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FatI	CATG	6 cut(s)	6, 132, 325, 330, 373, 513
FauI	CCCGC	1 cut(s)	197
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	541
FriOI	GRGCYC	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	131
Hin1II	CATG	6 cut(s)	10, 136, 329, 334, 377, 517
HincII	GTYRAC	2 cut(s)	85, 323
HindII	GTYRAC	2 cut(s)	85, 323
HinfI	GANTC	3 cut(s)	154, 208, 245
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	3 cut(s)	85, 323, 542
Hpy188I	TCNGA	2 cut(s)	99, 124
Hpy188III	TCNNGA	1 cut(s)	18
Hpy8I	GTNNAC	3 cut(s)	85, 323, 542
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	236, 431
HpyCH4V	TGCA	5 cut(s)	41, 66, 227, 423, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 113, 341
HpyF3I	CTNAG	3 cut(s)	98, 415, 498
Hsp92II	CATG	6 cut(s)	10, 136, 329, 334, 377, 517
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 363
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	104, 277
LpnPI	CCDG	8 cut(s)	113, 140, 162, 197, 294, 399, 477, 504
LweI	GCATC	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	5, 365
MboI	GATC	2 cut(s)	3, 363
MboII	GAAGA	3 cut(s)	43, 346, 350
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	538
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	2 cut(s)	42, 463
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	147, 275
MnlI	CCTC	2 cut(s)	544, 550
Mox20I	TGGCCA	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	6 cut(s)	45, 78, 137, 170, 527, 577
Msp20I	TGGCCA	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	128, 492
MvaI	CCWGG	2 cut(s)	128, 492
MwoI	GCNNNNNNNGC	3 cut(s)	72, 113, 341
NdeII	GATC	2 cut(s)	3, 363
NlaIII	CATG	6 cut(s)	10, 136, 329, 334, 377, 517
NlaIV	GGNNCC	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	154, 245
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	2 cut(s)	126, 490
PspGI	CCWGG	2 cut(s)	126, 490
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	538
SapI	GCTCTTC	1 cut(s)	359
SaqAI	TTAA	6 cut(s)	45, 78, 137, 170, 527, 577
Sau3AI	GATC	2 cut(s)	3, 363
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	128, 492
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	9 cut(s)	84, 109, 129, 148, 354, 421, 493, 499, 538
SfaNI	GCATC	1 cut(s)	294
SinI	GGWCC	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	77, 267
SmoI	CTYRAG	2 cut(s)	77, 267
Sse9I	AATT	2 cut(s)	42, 463
SsiI	CCGC	1 cut(s)	204
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	2 cut(s)	126, 490
TaaI	ACNGT	2 cut(s)	236, 431
TaqI	TCGA	3 cut(s)	17, 302, 532
TasI	AATT	2 cut(s)	42, 463
TfiI	GAWTC	2 cut(s)	154, 245
Tru1I	TTAA	6 cut(s)	45, 78, 137, 170, 527, 577
Tru9I	TTAA	6 cut(s)	45, 78, 137, 170, 527, 577
TscAI	CASTG	2 cut(s)	436, 509
TspDTI	ATGAA	1 cut(s)	485
TspRI	CASTG	2 cut(s)	436, 509
Vha464I	CTTAAG	1 cut(s)	77
VpaK11BI	GGWCC	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	541
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.