Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

13662150 .. 13663605

Gene Structure 1456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCTCAGAATCTTCACAGGCAAGTCCATAAGAAACCAAAACTACCCACCTGTAAAAGGCACCATCTTTAATCACCTCTTATACTACAACAAACTATATGACTATCACGTTCACACCCGAGTTGCGAGAGAATGCCCACCTCACCGGCTTCTTGCTCTAAACAGCAACACAGTATACACATGTGACCCTCGAAACATTGAGCATTTTCTCAAGACCAACTTTGCTCATTACTCGAAAAGTGACTATAACCAATGTATTATGTCTGAGATTTTGGGACAGGGCATTTTTGTTGTTAATGGAGAGAAATGGAGGCAGCTTGCTAGCTTTGAGTTCTCAACAAGGAATCTTGTTAGAGTTGTTTTTGAGTTTTTGGATTCCAAAAGGGTCTTTGATATGCAGTATGTCAAAGTCACCCATGATTTTGTGCACCAACTTATCAGGAGAAAGAGGGAACTTCTAGCTGGCAAGAAAGATGGTGTAAGTGACAAGGAGGACATACTATCAAGGTTTATGGAAAGTGAGAAGGATCCAGAGAAAATGAATGACAAATATCCAGGTGATATAATTCTGAATTTTATGATAGCTGGCAAAGATACAAGTGCAAATACATTGTCATGGTTCTTCTACATGCTCAACAAGAACCCTCTAATACAGGAAAAAGTTGCACAAGAAGTGAAGGATGTTGTCTGTATGAAACACGACGCTGACATTGATGAATTTGTGACGAACATAACTGATGCAACTCTTGAAAAGATGCAGTATCTTCATGCCACACTAACAGAGACCTTGAGGCTCTACCCTGCAGTTCCTGTGAATGGGAGGTTTGCAGAGATAGATGACATTCTTCCTGATGGCTTTAGAGTGAAAAAAGGAGACAGAATAGCTTACATGGCCTATGCCATGGGGAGAATGCCTTACATTTGGGGAGAAGATGCTGAGGATTTCCGACCTGAAAGATGGCTCGATAATGGAGTTTTCAAGCCCGAATCACCTTTCAAATTCGTCGCATTACTAACATATTCTGTTCTTAATTTACTAATTATTACATATGTTAATCATCTCTACACTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

357

Amino Acids

41.86

Weight (kDa)

7.2

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	123 - 333	7.8e-40	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	174
AclWI	GGATC	2 cut(s)	521, 534
AcsI	RAATTY	3 cut(s)	571, 716, 998
AfiI	CCNNNNNNNGG	2 cut(s)	56, 815
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	749, 979, 997
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	5 cut(s)	316, 324, 461, 584, 884
AluI	AGCT	5 cut(s)	316, 324, 461, 584, 884
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	776, 867
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	2 cut(s)	521, 534
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	117
AoxI	GGCC	1 cut(s)	891
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	313
ApoI	RAATTY	3 cut(s)	571, 716, 998
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AsuHPI	GGTGA	5 cut(s)	65, 134, 403, 569, 981
AsuNHI	GCTAGC	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	117
BaeGI	GKGCMC	1 cut(s)	429
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	4 cut(s)	71, 467, 845, 951
BciT130I	CCWGG	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	776, 867
BfaI	CTAG	2 cut(s)	321, 458
BfmI	CTRYAG	1 cut(s)	801
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	555
BmeT110I	CYCGRG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	61, 528
BmrFI	CCNGG	1 cut(s)	555
BmsI	GCATC	3 cut(s)	727, 744, 922
BmtI	GCTAGC	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	936
BpuEI	CTTGAG	2 cut(s)	194, 808
BsaI	GGTCTC	1 cut(s)	776
BsaJI	CCNNGG	1 cut(s)	900
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 815
Bse118I	RCCGGY	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	900
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	2 cut(s)	56, 815
BseMII	CTCAG	3 cut(s)	19, 255, 927
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	325
BshFI	GGCC	1 cut(s)	893
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	429
BsiHKCI	CYCGRG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	145
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	56, 815
BsmAI	GTCTC	2 cut(s)	776, 867
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	2 cut(s)	137, 915
BsnI	GGCC	1 cut(s)	893
Bso31I	GGTCTC	1 cut(s)	776
BsoBI	CYCGRG	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	526
Bsp19I	CCATGG	1 cut(s)	900
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	3 cut(s)	18, 256, 928
BspLI	GGNNCC	2 cut(s)	61, 528
BspMAI	CTGCAG	1 cut(s)	805
BspOI	GCTAGC	1 cut(s)	324
BspPI	GGATC	2 cut(s)	521, 534
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	776
BsrFI	RCCGGY	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	900
BssMI	GATC	1 cut(s)	526
BssNAI	GTATAC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	900
Bst1107I	GTATAC	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	4 cut(s)	318, 322, 463, 586
BstDEI	CTNAG	3 cut(s)	5, 264, 936
BstDSI	CCRYGG	1 cut(s)	900
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	685
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	2 cut(s)	776, 867
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	2 cut(s)	183, 631
BstSCI	CCNGG	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	801
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BstZ17I	GTATAC	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	893
BtgI	CCRYGG	1 cut(s)	900
BtsCI	GGATG	1 cut(s)	685
Cac8I	GCNNGC	4 cut(s)	318, 322, 463, 586
CaiI	CAGNNNCTG	1 cut(s)	809
Cfr10I	RCCGGY	1 cut(s)	144
CseI	GACGC	1 cut(s)	710
CviAII	CATG	7 cut(s)	180, 416, 615, 628, 767, 889, 901
DdeI	CTNAG	3 cut(s)	5, 264, 936
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
Eco130I	CCWWGG	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	900
FaeI	CATG	7 cut(s)	183, 419, 618, 631, 770, 892, 904
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	7 cut(s)	179, 415, 614, 627, 766, 888, 900
FauNDI	CATATG	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	2 cut(s)	321, 458
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	710
Hin1II	CATG	7 cut(s)	183, 419, 618, 631, 770, 892, 904
HinfI	GANTC	4 cut(s)	9, 343, 374, 986
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	5 cut(s)	65, 134, 403, 569, 981
Hpy166II	GTNNAC	3 cut(s)	112, 175, 427
Hpy188I	TCNGA	4 cut(s)	8, 265, 570, 947
Hpy188III	TCNNGA	5 cut(s)	211, 439, 530, 746, 848
Hpy8I	GTNNAC	3 cut(s)	112, 175, 427
Hpy99I	CGWCG	2 cut(s)	704, 1007
HpyAV	CCTTC	2 cut(s)	517, 670
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	108
HpyCH4V	TGCA	8 cut(s)	397, 427, 602, 665, 740, 757, 803, 827
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	3 cut(s)	5, 264, 936
HpySE526I	ACGT	1 cut(s)	108
Hsp92II	CATG	7 cut(s)	183, 419, 618, 631, 770, 892, 904
Kzo9I	GATC	1 cut(s)	526
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	3 cut(s)	727, 744, 922
MaeI	CTAG	2 cut(s)	321, 458
MaeII	ACGT	1 cut(s)	108
MaeIII	GTNAC	5 cut(s)	182, 239, 409, 482, 721
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	5 cut(s)	4, 613, 755, 836, 941
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	429
MluCI	AATT	6 cut(s)	564, 571, 716, 998, 1030, 1038
MmeI	TCCRAC	1 cut(s)	970
MseI	TTAA	4 cut(s)	69, 294, 1029, 1053
MslI	CAYNNNNRTG	1 cut(s)	613
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	555
Mva1269I	GAATGC	2 cut(s)	137, 915
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	890
NcoI	CCATGG	1 cut(s)	900
NdeI	CATATG	1 cut(s)	1048
NdeII	GATC	1 cut(s)	526
NheI	GCTAGC	1 cut(s)	320
NlaIII	CATG	7 cut(s)	183, 419, 618, 631, 770, 892, 904
NlaIV	GGNNCC	2 cut(s)	61, 528
NmuCI	GTSAC	5 cut(s)	182, 239, 409, 482, 721
NspI	RCATGY	2 cut(s)	183, 631
PciI	ACATGT	1 cut(s)	179
PctI	GAATGC	2 cut(s)	137, 915
PfeI	GAWTC	4 cut(s)	9, 343, 374, 986
PkrI	GCNGC	1 cut(s)	315
PscI	ACATGT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	61, 528
PstI	CTGCAG	1 cut(s)	805
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	526
RseI	CAYNNNNRTG	1 cut(s)	613
SaqAI	TTAA	4 cut(s)	69, 294, 1029, 1053
SatI	GCNGC	1 cut(s)	314
Sau3AI	GATC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	555
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	3 cut(s)	727, 744, 922
SfcI	CTRYAG	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	613
SmlI	CTYRAG	2 cut(s)	209, 787
SmoI	CTYRAG	2 cut(s)	209, 787
Sse9I	AATT	6 cut(s)	564, 571, 716, 998, 1030, 1038
SspMI	CTAG	2 cut(s)	321, 458
StyD4I	CCNGG	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	900
TaaI	ACNGT	1 cut(s)	172
TaiI	ACGT	1 cut(s)	111
TaqI	TCGA	3 cut(s)	190, 233, 963
TasI	AATT	6 cut(s)	564, 571, 716, 998, 1030, 1038
TfiI	GAWTC	4 cut(s)	9, 343, 374, 986
Tru1I	TTAA	4 cut(s)	69, 294, 1029, 1053
Tru9I	TTAA	4 cut(s)	69, 294, 1029, 1053
TseFI	GTSAC	5 cut(s)	182, 239, 409, 482, 721
TseI	GCWGC	1 cut(s)	313
Tsp45I	GTSAC	5 cut(s)	182, 239, 409, 482, 721
TspDTI	ATGAA	4 cut(s)	554, 707, 729, 755
VneI	GTGCAC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	3 cut(s)	571, 716, 998
XceI	RCATGY	2 cut(s)	183, 631
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	2 cut(s)	321, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.