Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Forward (+)

77707445 .. 77708122

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGACAGCCCGGATTTGGTTTCATGGAACACAATGATTGCTGGGTATTCAAAAAATGAGGATGGGGAGAAGCAGTTGAATTTGTTTGCCCGGTTGAAAAGATTATGTTATCTTAAACCAAATGAATATACTTATGCAGCTATCATATCTGCAGGAGGCACATACCTTGCTTCTCACTATGGTAAGCTTCTTCATGCTCAAGTCATAAAAGTAGGACTCGAGAAGAGTATCTTTGTAAGAACTGCACTAGTGTCTATGTACTTCAAGAACAGCGAAACGGATAATGCTGAAAAGGCATTTTATTGCATTTCGGAGAAGGATGTTGTTCTCGGACTGGATCATGGGTTATTCAAGATTGTCCGACGGGGAGAGTGCAATCAAGCCTTAAAAGCAAGATTTGATGTTGAAATGTCCGTATATGGGAGTCCGGTGGATATGTATGCAAAAAACGGTTGCCTTGAATCTACTTATTGTATATTTTCCCAAGTTTTGGACCCCGATTTAAAATGTTGGAACTCAATGCTTGGCGGATATAGTCACCATGGCATGGCGAAGAAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

187

Amino Acids

21.05

Weight (kDa)

8.14

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 50	3.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	490, 547
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	1 cut(s)	345
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	16, 420, 490, 547
AgsI	TTSAA	7 cut(s)	51, 79, 97, 265, 352, 407, 461
AhlI	ACTAGT	1 cut(s)	247
AluBI	AGCT	2 cut(s)	140, 187
AluI	AGCT	2 cut(s)	140, 187
AlwI	GGATC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	493
AsuC2I	CCSGG	2 cut(s)	11, 91
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	56
BcnI	CCSGG	2 cut(s)	11, 91
BcuI	ACTAGT	1 cut(s)	247
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	11, 91
Bme18I	GGWCC	1 cut(s)	493
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	11, 91
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	11, 91
BsaJI	CCNNGG	1 cut(s)	541
BsaWI	WCCGGW	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 420, 490, 547
Bse1I	ACTGG	1 cut(s)	339
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	67, 325
BseLI	CCNNNNNNNGG	4 cut(s)	16, 420, 490, 547
BseNI	ACTGG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	3 cut(s)	11, 91, 428
BslI	CCNNNNNNNGG	4 cut(s)	16, 420, 490, 547
BsoBI	CYCGRG	1 cut(s)	218
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	1 cut(s)	541
BspACI	CCGC	1 cut(s)	528
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	541
Bst4CI	ACNGT	1 cut(s)	452
Bst6I	CTCTTC	1 cut(s)	218
BstDSI	CCRYGG	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	67, 325
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 389
BstSCI	CCNGG	2 cut(s)	9, 89
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	541
BtsCI	GGATG	2 cut(s)	67, 325
Cfr13I	GGNCC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	5 cut(s)	24, 194, 341, 542, 547
CviJI	RGCY	4 cut(s)	9, 140, 187, 383
CviKI_1	RGCY	4 cut(s)	9, 140, 187, 383
CviQI	GTAC	1 cut(s)	259
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
DraI	TTTAAA	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	541
Eco47I	GGWCC	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	541
FaeI	CATG	5 cut(s)	27, 197, 344, 545, 550
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	5 cut(s)	23, 193, 340, 541, 546
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	74, 332
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	45
HapII	CCGG	3 cut(s)	11, 91, 428
Hin1II	CATG	5 cut(s)	27, 197, 344, 545, 550
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	216, 424, 461
HpaII	CCGG	3 cut(s)	11, 91, 428
HphI	GGTGA	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	313, 332, 362
Hpy188III	TCNNGA	3 cut(s)	220, 265, 352
Hpy99I	CGWCG	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	6 cut(s)	137, 152, 245, 306, 375, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 389
Hsp92II	CATG	5 cut(s)	27, 197, 344, 545, 550
Kzo9I	GATC	1 cut(s)	337
LpnPI	CCDG	6 cut(s)	24, 27, 104, 138, 320, 441
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	182, 235
MluCI	AATT	1 cut(s)	79
MlyI	GAGTC	2 cut(s)	210, 433
MmeI	TCCRAC	2 cut(s)	385, 491
MnlI	CCTC	2 cut(s)	52, 149
MseI	TTAA	3 cut(s)	114, 386, 503
MspI	CCGG	3 cut(s)	11, 91, 428
MspR9I	CCNGG	2 cut(s)	11, 91
MwoI	GCNNNNNNNGC	2 cut(s)	293, 389
NciI	CCSGG	2 cut(s)	11, 91
NcoI	CCATGG	1 cut(s)	541
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	5 cut(s)	27, 197, 344, 545, 550
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	461
PflMI	CCANNNNNTGG	2 cut(s)	490, 547
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	210, 432
PpsI	GAGTC	2 cut(s)	210, 432
PspFI	CCCAGC	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	154
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	3 cut(s)	114, 386, 503
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	493
SchI	GAGTC	2 cut(s)	210, 433
ScrFI	CCNGG	2 cut(s)	11, 91
SetI	ASST	3 cut(s)	142, 168, 189
SfcI	CTRYAG	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	218
SinI	GGWCC	1 cut(s)	493
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	198, 218
SmoI	CTYRAG	2 cut(s)	198, 218
SpeI	ACTAGT	1 cut(s)	247
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	2 cut(s)	9, 89
StyI	CCWWGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	114, 386, 503
Tru9I	TTAA	3 cut(s)	114, 386, 503
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	12, 138, 182
TspGWI	ACGGA	2 cut(s)	293, 403
Van91I	CCANNNNNTGG	2 cut(s)	490, 547
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	79
XhoI	CTCGAG	1 cut(s)	218
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.