Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

50289625 .. 50290674

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029861

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTACTTCAAGAACAGCGAAACGGATAGTGCTCAAAAGGCATTTTATTCTATTTCTGAGAAGGATGTTGTTCTCTGGACTGAGATGATCATGGGTTATTCAAGATTGGCTGATGGGGAGAGTGCAATTAAGTTCTTCAAAGAAATGTGCAAGGAAAGCCATAAGGTTGACAGCTTTGCTCTGAGTGGAGCTTTGAGTGCTTGTTCCGACCTGGCCATGTTAAAACAAGGTGAGATGATTCACTCGCAGGCCTTAAAAACAGGATTTGATGTTGAAATGTCTGTATGCGGGAGTCTGGTGGATATGTATGCAAAAAACGGTTGCCTTGAATCTGCTTATTGTATATTTTCCCAAGTTGTGGAGCCTGATTTGAAATGTTGGAACTCGATGCTTGGGGGATATAGTCAACATGGCATGGCAGAAGAAGCATTGAAGCTCTTTTTTGAGATCCAAAAACATGGTCTCTTACCAGACCAAGTAACATTTCTGTCTCTACTCTCAGCTTGCAACCACAGTGGGTTGGTTGAAGTAGGAAAGTTCTTGTGGAATTGTATGAAGGAGAATGGTATCCCACCTGGGTCTAAGCACTGCTCTTGCATGGTTAGTTTGTTAAGTCGAGCTCGACTACTGAATGAGGCAGAGGAACTTATTATCAAGTCACCGTTTAATGAAGATAATCTTGAACTGTGGAGAACTTTGCTGAGCTCGTGCGTCATCAATAAGAACTTGGAGATAGGAGTTCATGCAGCAGAGCATGTTCTAAAGGTTGATGCAGAAGACAGTGCAACACATATCTTGCTTTCAAATCTCTATGCTGCTGCCGGAAAATGGGATAAGGTTGTAGAAATAAGGAGAAAGATTAAAGAACTGACGTTAGAGAAGGATCCTGGGCTGAGCTGGATTGAGGATAAGAAGAATATTCAGGTATTCAGTTCTGGTGTTCAATCTAAGGAAGAGGTTGGTGAAGCCGAAGATGCACTGCATTGGCTACAAGGAAACATGGTAAGATCTCAAGGAGATGAACTTGATGAACCTATTTATACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

350

Amino Acids

38.95

Weight (kDa)

5.06

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 68	5.7e-07	PPR repeat family
PPR_2	PF13041	122 - 169	3.7e-11	PPR repeat family
PPR	PF01535	126 - 155	2.5e-08	PPR repeat
E_motif	PF20431	242 - 302	1.8e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	3 cut(s)	442, 878, 891
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	358, 828
AjnI	CCWGG	3 cut(s)	210, 574, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	7 cut(s)	174, 191, 436, 503, 620, 705, 897
AluI	AGCT	7 cut(s)	174, 191, 436, 503, 620, 705, 897
Alw21I	GWGCWC	3 cut(s)	34, 622, 707
Alw26I	GTCTC	2 cut(s)	467, 495
AlwI	GGATC	3 cut(s)	442, 878, 891
AoxI	GGCC	2 cut(s)	213, 249
ApeKI	GCWGC	3 cut(s)	746, 815, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AsuHPI	GGTGA	3 cut(s)	242, 651, 974
BalI	TGGCCA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	883
BanII	GRGCYC	2 cut(s)	622, 707
BauI	CACGAG	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	3 cut(s)	34, 622, 707
BbvI	GCAGC	3 cut(s)	758, 802, 805
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	3 cut(s)	212, 576, 888
BciVI	GTATCC	1 cut(s)	578
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	467, 495
BfuI	GTATCC	1 cut(s)	578
BglII	AGATCT	1 cut(s)	1007
BisI	GCNGC	3 cut(s)	747, 816, 819
BlpI	GCTNAGC	2 cut(s)	701, 893
BlsI	GCNGC	3 cut(s)	748, 817, 820
Bme1390I	CCNGG	3 cut(s)	212, 576, 888
BmiI	GGNNCC	2 cut(s)	363, 885
BmrFI	CCNGG	3 cut(s)	212, 576, 888
BmsI	GCATC	3 cut(s)	378, 760, 964
BpiI	GAAGAC	1 cut(s)	783
Bpu1102I	GCTNAGC	2 cut(s)	701, 893
BpuEI	CTTGAG	1 cut(s)	996
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	575, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 828
BseBI	CCWGG	3 cut(s)	212, 576, 888
BseDI	CCNNGG	2 cut(s)	575, 887
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	358, 828
BseMII	CTCAG	6 cut(s)	48, 72, 173, 513, 692, 884
BseXI	GCAGC	3 cut(s)	758, 802, 805
BshFI	GGCC	2 cut(s)	215, 251
BsiHKAI	GWGCWC	3 cut(s)	34, 622, 707
BsiSI	CCGG	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	358, 828
BsmAI	GTCTC	2 cut(s)	467, 495
BsnI	GGCC	2 cut(s)	215, 251
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	34, 622, 707
Bsp143I	GATC	4 cut(s)	87, 447, 883, 1007
Bsp1720I	GCTNAGC	2 cut(s)	701, 893
BspACI	CCGC	1 cut(s)	288
BspANI	GGCC	2 cut(s)	215, 251
BspCNI	CTCAG	6 cut(s)	49, 73, 174, 512, 693, 885
BspLI	GGNNCC	2 cut(s)	363, 885
BspPI	GGATC	3 cut(s)	442, 878, 891
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	575, 887
BssMI	GATC	4 cut(s)	87, 447, 883, 1007
BssSI	CACGAG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	706
Bst2UI	CCWGG	3 cut(s)	212, 576, 888
Bst4CI	ACNGT	5 cut(s)	320, 515, 663, 687, 782
Bst6I	CTCTTC	1 cut(s)	948
BstC8I	GCNNGC	2 cut(s)	249, 505
BstDEI	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	4 cut(s)	90, 450, 886, 1010
BstMAI	GTCTC	2 cut(s)	467, 495
BstMBI	GATC	4 cut(s)	87, 447, 883, 1007
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
BstNI	CCWGG	3 cut(s)	212, 576, 888
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	210, 574, 886
BstV1I	GCAGC	3 cut(s)	758, 802, 805
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	3 cut(s)	447, 883, 1007
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	3 cut(s)	447, 883, 1007
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	215, 251
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	2 cut(s)	586, 977
BtsIMutI	CAGTG	4 cut(s)	520, 586, 787, 977
Cac8I	GCNNGC	2 cut(s)	249, 505
CseI	GACGC	1 cut(s)	700
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	9 cut(s)	91, 217, 410, 415, 458, 598, 743, 755, 1000
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
DpnI	GATC	4 cut(s)	89, 449, 885, 1009
DpnII	GATC	4 cut(s)	87, 447, 883, 1007
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Ecl136II	GAGCTC	2 cut(s)	620, 705
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	622, 707
Eco31I	GGTCTC	1 cut(s)	467
Eco53kI	GAGCTC	2 cut(s)	620, 705
EcoICRI	GAGCTC	2 cut(s)	620, 705
EcoRII	CCWGG	3 cut(s)	210, 574, 886
EcoT38I	GRGCYC	2 cut(s)	622, 707
FaeI	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	9 cut(s)	90, 216, 409, 414, 457, 597, 742, 754, 999
FauI	CCCGC	1 cut(s)	281
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	747, 816, 819
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	622, 707
Fsp4HI	GCNGC	3 cut(s)	747, 816, 819
GluI	GCNGC	3 cut(s)	747, 816, 819
HaeIII	GGCC	2 cut(s)	215, 251
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	1 cut(s)	700
Hin1II	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
HincII	GTYRAC	2 cut(s)	169, 407
HindII	GTYRAC	2 cut(s)	169, 407
HinfI	GANTC	3 cut(s)	238, 292, 329
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	3 cut(s)	242, 651, 974
Hpy166II	GTNNAC	2 cut(s)	169, 407
Hpy188I	TCNGA	3 cut(s)	58, 183, 208
Hpy188III	TCNNGA	4 cut(s)	10, 76, 102, 680
Hpy8I	GTNNAC	2 cut(s)	169, 407
HpyAV	CCTTC	3 cut(s)	55, 550, 874
HpyCH4III	ACNGT	5 cut(s)	320, 515, 663, 687, 782
HpyCH4IV	ACGT	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
HpyF3I	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	4 cut(s)	87, 447, 883, 1007
LmnI	GCTCC	2 cut(s)	188, 361
Lsp1109I	GCAGC	3 cut(s)	758, 802, 805
LweI	GCATC	3 cut(s)	378, 760, 964
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	2 cut(s)	478, 657
MalI	GATC	4 cut(s)	89, 449, 885, 1009
MboI	GATC	4 cut(s)	87, 447, 883, 1007
MboII	GAAGA	7 cut(s)	127, 434, 683, 788, 925, 965, 983
MflI	RGATCY	3 cut(s)	447, 883, 1007
MhlI	GDGCHC	3 cut(s)	34, 622, 707
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	126, 547
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	2 cut(s)	231, 359
MnlI	CCTC	4 cut(s)	628, 634, 898, 949
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	3 cut(s)	212, 576, 888
MvaI	CCWGG	3 cut(s)	212, 576, 888
MwoI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
NdeII	GATC	4 cut(s)	87, 447, 883, 1007
NlaIII	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
NlaIV	GGNNCC	2 cut(s)	363, 885
NmuCI	GTSAC	1 cut(s)	657
NspI	RCATGY	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	238, 329
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	748, 817, 820
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp124BI	GAGCTC	2 cut(s)	622, 707
Psp6I	CCWGG	3 cut(s)	210, 574, 886
PspGI	CCWGG	3 cut(s)	210, 574, 886
PspN4I	GGNNCC	2 cut(s)	363, 885
PsuI	RGATCY	3 cut(s)	447, 883, 1007
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacI	GAGCTC	2 cut(s)	622, 707
SaqAI	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
SatI	GCNGC	3 cut(s)	747, 816, 819
Sau3AI	GATC	4 cut(s)	87, 447, 883, 1007
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	3 cut(s)	212, 576, 888
SduI	GDGCHC	3 cut(s)	34, 622, 707
SfaNI	GCATC	3 cut(s)	378, 760, 964
SmlI	CTYRAG	1 cut(s)	1011
SmoI	CTYRAG	1 cut(s)	1011
Sse9I	AATT	2 cut(s)	126, 547
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	1 cut(s)	288
SspI	AATATT	1 cut(s)	919
SstI	GAGCTC	2 cut(s)	622, 707
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	210, 574, 886
TaaI	ACNGT	5 cut(s)	320, 515, 663, 687, 782
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	3 cut(s)	386, 616, 622
TasI	AATT	2 cut(s)	126, 547
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	238, 329
Tru1I	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
Tru9I	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
TscAI	CASTG	4 cut(s)	520, 593, 787, 984
TseFI	GTSAC	1 cut(s)	657
TseI	GCWGC	3 cut(s)	746, 815, 818
Tsp45I	GTSAC	1 cut(s)	657
TspDTI	ATGAA	5 cut(s)	569, 684, 731, 1035, 1044
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	4 cut(s)	520, 593, 787, 984
Van91I	CCANNNNNTGG	1 cut(s)	358
XceI	RCATGY	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.