Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000112.1

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Forward (+)

113293 .. 114342

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000112.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgtacttcaagaacagcgaaacggatagtgctcaaaaggcattttattctatttctgagaaggatgttgttctctggactgagatgatcatgggctattcaagattggctaatggggagagtgcaattaagttcttcaaagaaatgtgcaaggaaagccataaggttgacagctttgctctgagtggagctttgagtgcttgttctgacctggccatgttaaaacgaggtgagatgattcactcgcaggccttaaaaacaggatttgatgttgaaatgtctgtatgtgggagtctggtggatatgtatgcaaaaaacggttgccttgaatctgcttattgtatattttcccaagttgtggagcctgatttgaaatgttggaactcgatgcttgggggatatagtcaacatggcatggcagaagaagcattgaagctcttttttgagatccaaaaacatggtctcgtaccagaccaagtaacatttctgtctctactctcagcttgcaaccacagtgggttggttgaagtaggaaagttcttgtggaattgtatgaaggagaatggtatcccacctgggcctaagcactgctcttgcatggttagtttgttaagtcgagctcgactactgaatgaggcagaggagcttattatcaagtcaccatttaatgaagataatcttgaactgtggagaactttgctgagctcgtgcgtcatcaataagaacttggagataggagttcatgcagcagagcatgttctaaaggttgatgcagaagacagtgcaacacatatcttgctttcaaatctctatgctgctgccggaaaatgggataaggttgtagaaataaggagaaagattaaagaactgacgttagagaaggatcctgggctgagctggattgaggataagaagaatattcaggtattcagttctggtgttcaatctaaggaagaggttggtgaagccgaagatgcactgcattggctacaaggaaacatggtacaatctcaaagagatgaacttgatgaacctatttataccacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

349

Amino Acids

39.04

Weight (kDa)

5.18

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AclWI	GGATC	3 cut(s)	442, 878, 891
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	3 cut(s)	5, 468, 1005
AfiI	CCNNNNNNNGG	2 cut(s)	358, 828
AjnI	CCWGG	3 cut(s)	210, 574, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	8 cut(s)	174, 191, 436, 503, 620, 646, 705, 897
AluI	AGCT	8 cut(s)	174, 191, 436, 503, 620, 646, 705, 897
Alw21I	GWGCWC	3 cut(s)	34, 622, 707
Alw26I	GTCTC	2 cut(s)	467, 495
AlwI	GGATC	3 cut(s)	442, 878, 891
AoxI	GGCC	3 cut(s)	213, 249, 578
ApeKI	GCWGC	3 cut(s)	746, 815, 818
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	3 cut(s)	242, 651, 974
BalI	TGGCCA	1 cut(s)	215
BamHI	GGATCC	1 cut(s)	883
BanII	GRGCYC	2 cut(s)	622, 707
BauI	CACGAG	1 cut(s)	706
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	3 cut(s)	34, 622, 707
BbvI	GCAGC	3 cut(s)	758, 802, 805
BciT130I	CCWGG	3 cut(s)	212, 576, 888
BciVI	GTATCC	1 cut(s)	578
BclI	TGATCA	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	467, 495
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	3 cut(s)	747, 816, 819
BlpI	GCTNAGC	2 cut(s)	701, 893
BlsI	GCNGC	3 cut(s)	748, 817, 820
Bme1390I	CCNGG	3 cut(s)	212, 576, 888
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	363, 885
BmrFI	CCNGG	3 cut(s)	212, 576, 888
BmsI	GCATC	3 cut(s)	378, 760, 964
BpiI	GAAGAC	1 cut(s)	783
Bpu10I	CCTNAGC	1 cut(s)	582
Bpu1102I	GCTNAGC	2 cut(s)	701, 893
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	2 cut(s)	575, 887
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 828
BseBI	CCWGG	3 cut(s)	212, 576, 888
BseDI	CCNNGG	2 cut(s)	575, 887
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	358, 828
BseMII	CTCAG	6 cut(s)	48, 72, 173, 513, 692, 884
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	3 cut(s)	758, 802, 805
BshFI	GGCC	3 cut(s)	215, 251, 580
BsiHKAI	GWGCWC	3 cut(s)	34, 622, 707
BsiSI	CCGG	1 cut(s)	822
BslI	CCNNNNNNNGG	2 cut(s)	358, 828
BsmAI	GTCTC	2 cut(s)	467, 495
BsnI	GGCC	3 cut(s)	215, 251, 580
Bso31I	GGTCTC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	34, 622, 707
Bsp143I	GATC	3 cut(s)	87, 447, 883
Bsp1720I	GCTNAGC	2 cut(s)	701, 893
BspANI	GGCC	3 cut(s)	215, 251, 580
BspCNI	CTCAG	6 cut(s)	49, 73, 174, 512, 693, 885
BspLI	GGNNCC	2 cut(s)	363, 885
BspPI	GGATC	3 cut(s)	442, 878, 891
BspTNI	GGTCTC	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	575, 887
BssMI	GATC	3 cut(s)	87, 447, 883
BssSI	CACGAG	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	706
Bst2UI	CCWGG	3 cut(s)	212, 576, 888
Bst4CI	ACNGT	4 cut(s)	320, 515, 687, 782
Bst6I	CTCTTC	1 cut(s)	948
BstC8I	GCNNGC	2 cut(s)	249, 505
BstDEI	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	90, 450, 886
BstMAI	GTCTC	2 cut(s)	467, 495
BstMBI	GATC	3 cut(s)	87, 447, 883
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
BstNI	CCWGG	3 cut(s)	212, 576, 888
BstNSI	RCATGY	1 cut(s)	758
BstSCI	CCNGG	3 cut(s)	210, 574, 886
BstV1I	GCAGC	3 cut(s)	758, 802, 805
BstV2I	GAAGAC	1 cut(s)	783
BstX2I	RGATCY	2 cut(s)	447, 883
BstXI	CCANNNNNNTGG	1 cut(s)	458
BstYI	RGATCY	2 cut(s)	447, 883
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	3 cut(s)	215, 251, 580
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	2 cut(s)	586, 977
BtsIMutI	CAGTG	4 cut(s)	520, 586, 787, 977
Cac8I	GCNNGC	2 cut(s)	249, 505
Cfr13I	GGNCC	1 cut(s)	578
CseI	GACGC	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	4, 467, 1004
CspCI	CAANNNNNGTGG	2 cut(s)	496, 531
CviAII	CATG	9 cut(s)	91, 217, 410, 415, 458, 598, 743, 755, 1000
CviQI	GTAC	3 cut(s)	4, 467, 1004
DdeI	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
DpnI	GATC	3 cut(s)	89, 449, 885
DpnII	GATC	3 cut(s)	87, 447, 883
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Ecl136II	GAGCTC	2 cut(s)	620, 705
Eco147I	AGGCCT	1 cut(s)	251
Eco24I	GRGCYC	2 cut(s)	622, 707
Eco31I	GGTCTC	1 cut(s)	467
Eco53kI	GAGCTC	2 cut(s)	620, 705
EcoICRI	GAGCTC	2 cut(s)	620, 705
EcoRII	CCWGG	3 cut(s)	210, 574, 886
EcoT38I	GRGCYC	2 cut(s)	622, 707
FaeI	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	9 cut(s)	90, 216, 409, 414, 457, 597, 742, 754, 999
FbaI	TGATCA	1 cut(s)	87
Fnu4HI	GCNGC	3 cut(s)	747, 816, 819
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	622, 707
Fsp4HI	GCNGC	3 cut(s)	747, 816, 819
GluI	GCNGC	3 cut(s)	747, 816, 819
HaeIII	GGCC	3 cut(s)	215, 251, 580
HapII	CCGG	1 cut(s)	822
HgaI	GACGC	1 cut(s)	700
Hin1II	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
HincII	GTYRAC	2 cut(s)	169, 407
HindII	GTYRAC	2 cut(s)	169, 407
HinfI	GANTC	3 cut(s)	238, 292, 329
HpaII	CCGG	1 cut(s)	822
HphI	GGTGA	3 cut(s)	242, 651, 974
Hpy166II	GTNNAC	2 cut(s)	169, 407
Hpy188I	TCNGA	3 cut(s)	58, 183, 208
Hpy188III	TCNNGA	4 cut(s)	10, 76, 102, 680
Hpy8I	GTNNAC	2 cut(s)	169, 407
HpyAV	CCTTC	3 cut(s)	55, 550, 874
HpyCH4III	ACNGT	4 cut(s)	320, 515, 687, 782
HpyCH4IV	ACGT	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
HpyF3I	CTNAG	8 cut(s)	57, 81, 182, 499, 582, 701, 893, 948
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
Ksp22I	TGATCA	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	87, 447, 883
LmnI	GCTCC	3 cut(s)	188, 361, 643
Lsp1109I	GCAGC	3 cut(s)	758, 802, 805
LweI	GCATC	3 cut(s)	378, 760, 964
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	2 cut(s)	478, 657
MalI	GATC	3 cut(s)	89, 449, 885
MboI	GATC	3 cut(s)	87, 447, 883
MboII	GAAGA	7 cut(s)	127, 434, 683, 788, 925, 965, 983
MflI	RGATCY	2 cut(s)	447, 883
MhlI	GDGCHC	3 cut(s)	34, 622, 707
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	126, 547
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	301
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	5 cut(s)	221, 628, 634, 898, 949
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
Msp20I	TGGCCA	1 cut(s)	215
MspI	CCGG	1 cut(s)	822
MspR9I	CCNGG	3 cut(s)	212, 576, 888
MvaI	CCWGG	3 cut(s)	212, 576, 888
MwoI	GCNNNNNNNGC	5 cut(s)	38, 156, 197, 425, 974
NdeII	GATC	3 cut(s)	87, 447, 883
NlaIII	CATG	9 cut(s)	94, 220, 413, 418, 461, 601, 746, 758, 1003
NlaIV	GGNNCC	2 cut(s)	363, 885
NmuCI	GTSAC	1 cut(s)	657
NspI	RCATGY	1 cut(s)	758
PceI	AGGCCT	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	238, 329
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	748, 817, 820
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp124BI	GAGCTC	2 cut(s)	622, 707
Psp6I	CCWGG	3 cut(s)	210, 574, 886
PspGI	CCWGG	3 cut(s)	210, 574, 886
PspN4I	GGNNCC	2 cut(s)	363, 885
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	447, 883
RsaI	GTAC	3 cut(s)	5, 468, 1005
RsaNI	GTAC	3 cut(s)	4, 467, 1004
SacI	GAGCTC	2 cut(s)	622, 707
SaqAI	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
SatI	GCNGC	3 cut(s)	747, 816, 819
Sau3AI	GATC	3 cut(s)	87, 447, 883
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	3 cut(s)	212, 576, 888
SduI	GDGCHC	3 cut(s)	34, 622, 707
SfaNI	GCATC	3 cut(s)	378, 760, 964
Sse9I	AATT	2 cut(s)	126, 547
SseBI	AGGCCT	1 cut(s)	251
SspI	AATATT	1 cut(s)	919
SstI	GAGCTC	2 cut(s)	622, 707
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	210, 574, 886
TaaI	ACNGT	4 cut(s)	320, 515, 687, 782
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	3 cut(s)	386, 616, 622
TasI	AATT	2 cut(s)	126, 547
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	238, 329
Tru1I	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
Tru9I	TTAA	6 cut(s)	129, 221, 254, 611, 666, 861
TscAI	CASTG	4 cut(s)	520, 593, 787, 984
TseFI	GTSAC	1 cut(s)	657
TseI	GCWGC	3 cut(s)	746, 815, 818
Tsp45I	GTSAC	1 cut(s)	657
TspDTI	ATGAA	5 cut(s)	569, 684, 731, 1035, 1044
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	4 cut(s)	520, 593, 787, 984
Van91I	CCANNNNNTGG	1 cut(s)	358
XceI	RCATGY	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.