Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002972

Physical Location & Seq

Genomic Coordinates Reverse (-)

13997089 .. 13997729

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATCATGGGTTTTTTGAGATTGACTGATGGGGAGAGTGCAATTATGTTCTTTTATGAAATGTGCCAGGAAGGCCATAATATTGACAGCCTTGCTCTCAGTGGAGTGTTGAGTGCTTGTTCCGACCTTGCCATGCTAAAACAAGGTGAGATGATTCACTCATGGGCCGGAAAAACTGGGCACAATGTTGAAATCTGCTTATTCTATATTTTCCCAAATCTCGGACCTGATTTGAAATGCTGGAACTCAATGCTCAGAGGATATAGTCATCACGGCGTGGCAGAGGAAGCATTGAAGCTGTTTTCCGAGATAGAAAAACACGGTCTGAGACCAGACCAAGTAACATTTCTGTCTCTACTCTCAGCTTGCAACCACAGTGGTTTGATTGAAGTAGGAAAGTTATTGTGGAAATGTATGAAGGAAAACGGTATCACACCTGGGCCTAAGCACTACTCTTGCATGGTGAGTTTGTTAAGTCGAGCTCGGTTGTTGGATGAGGCAGAGGAGCTTATCATCAGTTCACCGTTTAATGAAAATCTTGAACTGTGGAGAACTTTGCTGAGCTCGTGCGTCGCAATAAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 PPR PPR_2

Protein Analysis

196

Amino Acids

21.8

Weight (kDa)

5.73

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002972)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50420 AT3G50420
fragaria_vesca	FvH4_1g14840
malus_domestica	MD06G1092000.v1.1 MD15G1276000.v1.1
prunus_persica	Prupe.7G142000_v2.0.a1
pyrus_communis	pycom06g08800 pycom15g23890
rosa_chinensis	RchiOBHm_Chr1g0329891 RchiOBHm_Chr2g0103801
rosa_laevigata	RLG00000017261 RLG00000017264 RLG00000029855 RLG00000029861
rosa_multiflora	Rmu_sc0000112.1_g000010 Rmu_sc0000112.1_g000024 Rmu_sc0000112.1_g000025 Rmu_sc0002081.1_g000002 Rmu_sc0002081.1_g000010 Rmu_sc0006774.1_g000014
rosa_roxburghii	Rroxscaffold_2G00139300 Rroxscaffold_2G00139350 Rroxscaffold_4G00320530
rosa_rugosa	Rorug01G0084100 Rorug02G0117300
rosa_samantha	Rh1AG102000 Rh1BG081200 Rh1CG097500 Rh1DG105100 Rh2AG166400 Rh2BG173600 Rh2CG172300 Rh2DG171800
rosa_wichuraiana	Rw0G002030 Rw0G006910 Rw1G008070 Rw1G008120 Rw2G013030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	582
AdeI	CACNNNGTG	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	191, 235, 295, 389, 542
AjnI	CCWGG	2 cut(s)	66, 436
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	5 cut(s)	298, 365, 482, 508, 564
AluI	AGCT	5 cut(s)	298, 365, 482, 508, 564
Alw21I	GWGCWC	2 cut(s)	484, 566
Alw26I	GTCTC	2 cut(s)	322, 357
AoxI	GGCC	3 cut(s)	73, 165, 440
ApoI	RAATTY	1 cut(s)	582
AspS9I	GGNCC	3 cut(s)	165, 224, 440
AsuHPI	GGTGA	3 cut(s)	158, 475, 513
AvaII	GGWCC	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	183
BanII	GRGCYC	2 cut(s)	484, 566
BauI	CACGAG	1 cut(s)	565
Bbv12I	GWGCWC	2 cut(s)	484, 566
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	2 cut(s)	68, 438
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	322, 357
BglI	GCCNNNNNGGC	1 cut(s)	72
BlpI	GCTNAGC	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	68, 438
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	165, 224, 440
BmrFI	CCNGG	2 cut(s)	68, 438
BmrI	ACTGGG	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	444
Bpu1102I	GCTNAGC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	2 cut(s)	68, 438
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMII	CTCAG	5 cut(s)	112, 268, 317, 375, 551
BseNI	ACTGG	1 cut(s)	181
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	183
BshFI	GGCC	3 cut(s)	75, 167, 442
BsiHKAI	GWGCWC	2 cut(s)	484, 566
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	322, 357
BsnI	GGCC	3 cut(s)	75, 167, 442
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	3 cut(s)	183, 484, 566
Bsp143I	GATC	1 cut(s)	3
Bsp1720I	GCTNAGC	1 cut(s)	560
BspANI	GGCC	3 cut(s)	75, 167, 442
BspCNI	CTCAG	5 cut(s)	111, 267, 318, 374, 552
BspTNI	GGTCTC	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	565
Bst2UI	CCWGG	2 cut(s)	68, 438
Bst4CI	ACNGT	5 cut(s)	323, 377, 428, 525, 546
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	6 cut(s)	98, 254, 326, 361, 444, 560
BstF5I	GGATG	1 cut(s)	499
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	322, 357
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 287
BstNI	CCWGG	2 cut(s)	68, 438
BstSCI	CCNGG	2 cut(s)	66, 436
BstSLI	GKGCMC	1 cut(s)	183
BsuRI	GGCC	3 cut(s)	75, 167, 442
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	106, 382
Cac8I	GCNNGC	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	165, 224, 440
CseI	GACGC	1 cut(s)	559
CspCI	CAANNNNNGTGG	2 cut(s)	358, 393
CviAII	CATG	4 cut(s)	7, 133, 162, 460
CviJI	RGCY	9 cut(s)	75, 90, 167, 298, 365, 442, 482, 508, 564
CviKI_1	RGCY	9 cut(s)	75, 90, 167, 298, 365, 442, 482, 508, 564
DdeI	CTNAG	6 cut(s)	98, 254, 326, 361, 444, 560
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraIII	CACNNNGTG	1 cut(s)	277
Ecl136II	GAGCTC	2 cut(s)	482, 564
Eco24I	GRGCYC	2 cut(s)	484, 566
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	2 cut(s)	482, 564
EcoICRI	GAGCTC	2 cut(s)	482, 564
EcoRII	CCWGG	2 cut(s)	66, 436
EcoT38I	GRGCYC	2 cut(s)	484, 566
FaeI	CATG	4 cut(s)	10, 136, 165, 463
FatI	CATG	4 cut(s)	6, 132, 161, 459
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	2 cut(s)	484, 566
HaeIII	GGCC	3 cut(s)	75, 167, 442
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	559
Hin1II	CATG	4 cut(s)	10, 136, 165, 463
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	3 cut(s)	158, 475, 513
Hpy166II	GTNNAC	1 cut(s)	521
Hpy188I	TCNGA	5 cut(s)	124, 224, 257, 307, 327
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	1 cut(s)	521
Hpy99I	CGWCG	1 cut(s)	575
HpyAV	CCTTC	2 cut(s)	65, 412
HpyCH4III	ACNGT	5 cut(s)	323, 377, 428, 525, 546
HpyCH4V	TGCA	3 cut(s)	41, 369, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 287
HpyF3I	CTNAG	6 cut(s)	98, 254, 326, 361, 444, 560
Hsp92II	CATG	4 cut(s)	10, 136, 165, 463
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	9 cut(s)	53, 80, 162, 181, 226, 240, 345, 423, 450
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MhlI	GDGCHC	3 cut(s)	183, 484, 566
MluCI	AATT	2 cut(s)	42, 582
MmeI	TCCRAC	2 cut(s)	147, 471
MnlI	CCTC	4 cut(s)	251, 277, 490, 496
MseI	TTAA	2 cut(s)	473, 528
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	68, 438
MvaI	CCWGG	2 cut(s)	68, 438
MwoI	GCNNNNNNNGC	2 cut(s)	72, 287
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	4 cut(s)	10, 136, 165, 463
PfeI	GAWTC	1 cut(s)	154
Psp124BI	GAGCTC	2 cut(s)	484, 566
Psp6I	CCWGG	2 cut(s)	66, 436
PspGI	CCWGG	2 cut(s)	66, 436
PspPI	GGNCC	3 cut(s)	165, 224, 440
SacI	GAGCTC	2 cut(s)	484, 566
SaqAI	TTAA	2 cut(s)	473, 528
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	165, 224, 440
ScrFI	CCNGG	2 cut(s)	68, 438
SduI	GDGCHC	3 cut(s)	183, 484, 566
SetI	ASST	9 cut(s)	129, 148, 229, 300, 367, 439, 484, 510, 566
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	2 cut(s)	42, 582
SspI	AATATT	1 cut(s)	82
SstI	GAGCTC	2 cut(s)	484, 566
StyD4I	CCNGG	2 cut(s)	66, 436
TaaI	ACNGT	5 cut(s)	323, 377, 428, 525, 546
TaqI	TCGA	1 cut(s)	478
TasI	AATT	2 cut(s)	42, 582
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	473, 528
Tru9I	TTAA	2 cut(s)	473, 528
TscAI	CASTG	2 cut(s)	106, 382
TspDTI	ATGAA	3 cut(s)	72, 431, 546
TspRI	CASTG	2 cut(s)	106, 382
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.