MD09G1020600.v1.1

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1257145 .. 1260058
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1020600.v1.1.491

Sequence Viewer

Length: 1551 bp
ATGTGTGCATATAAGGGAAGTGGAATCACAAGTCAAATACTTTTGATTAGAAAAGATAGAGAACAAAAAAATATGGTTGGCTTAGCCCCTATTTTATTTGCTCTCTTGCTAGGACTACCAATATTTGCTTATATTCTTGTGCAAATATTCTTTGTAGCACTACATGATCATAAAAACCCCGCTAAAAACTTGCCTCCTGGAAGCATGGGATGGCCCTTGTTTGGAGAGACCCTTGGCTTCCTTAAACCTCATTGTTCCAACACCCTCGGAAGCTTCTTGGAACAACATTGCTCTAGATATGGGAAGGTTTTTAAATCGAATCTATTTGGTTCACCAACCATAGTTTCATGCGACCTTGAGCTCAACGCGTTTATTCTCCAGAACGAAGAGAAGCTTTTCCAAGCCAGCTACCCCAAGCCCATCCATGGCATTCTTGGAAAGCATTCTTTGCTCACTGTCACCGGCGAGCTTCATAGAAAGCTTAGAAACATTGGTGTCAGCTTCATTGCCACCTCTAAGTCCTCGCCGGATTTCCTCCATTGGGTTCAGAAGCTGTCTATCTCAATGATGGAGTCGTGGAATGGCTGCGAACAAGTCTTCTTCTACAAACAAACTAAAGCGTTTACACTCCGTCTAATGGTGAACCACCTTCTGAGCGTTAAACCGGATGAGCCGCTAGCCTCGAGAATATTACAAGACTTTGAAACCTACATGACGGGCTTTGTGTCTTTGCCGTTAAACATTCTGGGAACCGCTTATGCCAGGGCTGTGAAGGCTAGAGCAAGGCTTTCTTTCTCTGTTAAAGAGATTATGACAGAAAGAAGAAAAGGGAAAGCTAGTGGGCAGCTCAGAGGAGGAGAAGAAGACTTCTTAGACGTGATACTGTCGAAACAGAGTCTAACGGACGACGAAGAAATAGTGAGCATTGTGTTGGATATAATGCTCGGAGGCTACGAGACAACAGCGACCCTTATGTCATTGATTGTCTACTTTCTCGGCCATGCGCCAATTGCTTTTCACAAATTAAAGGAAGAACACCAAACGATAAGGGAAAACAAAAAGGATGGGGAATTGTTAAATTGGGAAGATTACAAGAAAATGGATTTTACTGACTATGTTATATATGAAGGTATGAGGTGTGGGAATGTAGTCAAATTTGTGCACAGGAAAGCTCTTGTAGACGTCAAATTTAAAGAATTCCTGATACCATCTGGATGGAAGGTTCTTCCAATTTTTACGGGGGCGCATATGGATCCAGATCTTCATGAGAATCCCACAGAGTTTGATCCTTGGAGATGGATTAATAATTTTAAAGAAATGAGCAAAAAGGTGACAGTGTTTGGTGGTGGATCAAGGCTTTGTCCGGGAGCTGAACTCGCTAAAGTAGTCATTTCATTCTTCCTTCATCATCTTATCCTTAGTTATAGATGGAAAACAAAATCAGATGATTGCCCACTTGCTTACCCTTACGTGCAATTTCGGAGAGGTTTGTTATTAGAAATTGAACCAGCTGCTTCAGATCAACAAGAAAAGGAAAACAAATCGATATAA

Protein Analysis

517

Amino Acids

58.67

Weight (kDa)

8.77

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 65 - 485 1.5e-54 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 973
AatII GACGTC 1 cut(s) 1185
AccI GTMKAC 2 cut(s) 987, 1179
AccII CGCG 1 cut(s) 368
AciI CCGC 3 cut(s) 180, 674, 753
AclWI GGATC 4 cut(s) 1247, 1260, 1280, 1357
AcoI YGGCCR 1 cut(s) 997
AcsI RAATTY 3 cut(s) 1154, 1187, 1196
AcuI CTGAAG 1 cut(s) 1500
AcyI GRCGYC 1 cut(s) 1182
AfiI CCNNNNNNNGG 4 cut(s) 221, 425, 541, 637
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 2 cut(s) 704, 1505
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 2 cut(s) 196, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AloI GAACNNNNNNTCC 2 cut(s) 1206, 1238
Alw21I GWGCWC 2 cut(s) 363, 1164
Alw26I GTCTC 2 cut(s) 221, 950
Alw44I GTGCAC 1 cut(s) 1160
AlwI GGATC 4 cut(s) 1247, 1260, 1280, 1357
AlwNI CAGNNNCTG 1 cut(s) 553
Ama87I CYCGRG 1 cut(s) 682
AoxI GGCC 2 cut(s) 212, 997
ApaLI GTGCAC 1 cut(s) 1160
ApeKI GCWGC 3 cut(s) 585, 844, 1511
ApoI RAATTY 3 cut(s) 1154, 1187, 1196
AseI ATTAAT 1 cut(s) 1302
Asp700I GAANNNNTTC 2 cut(s) 395, 442
AspLEI GCGC 2 cut(s) 1006, 1246
AspS9I GGNCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 1365
AsuHPI GGTGA 4 cut(s) 324, 451, 652, 1342
AsuNHI GCTAGC 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 682
BaeGI GKGCMC 1 cut(s) 1164
BamHI GGATCC 1 cut(s) 1252
BanII GRGCYC 1 cut(s) 363
BbsI GAAGAC 2 cut(s) 589, 870
Bbv12I GWGCWC 2 cut(s) 363, 1164
BbvI GCAGC 3 cut(s) 572, 856, 1498
BccI CCATC 8 cut(s) 204, 428, 562, 1058, 1209, 1216, 1290, 1422
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 2 cut(s) 198, 763
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 1365
BcoDI GTCTC 2 cut(s) 221, 950
BfaI CTAG 5 cut(s) 110, 294, 677, 777, 837
BglII AGATCT 1 cut(s) 1258
BisI GCNGC 4 cut(s) 586, 674, 845, 1512
BlpI GCTNAGC 1 cut(s) 82
BlsI GCNGC 4 cut(s) 587, 675, 846, 1513
Bme1390I CCNGG 3 cut(s) 198, 763, 1365
BmeT110I CYCGRG 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 751, 1254
BmrFI CCNGG 3 cut(s) 198, 763, 1365
BmtI GCTAGC 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 589, 870
BplI GAGNNNNNCTC 2 cut(s) 1359, 1391
BpmI CTGGAG 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 1365
Bsa29I ATCGAT 1 cut(s) 1544
BsaAI YACGTR 1 cut(s) 1471
BsaBI GATNNNNATC 1 cut(s) 1257
BsaHI GRCGYC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 5 cut(s) 232, 265, 424, 762, 1289
BsaWI WCCGGW 1 cut(s) 664
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 425, 541, 637
Bse118I RCCGGY 1 cut(s) 461
Bse3DI GCAATG 2 cut(s) 286, 504
Bse8I GATNNNNATC 1 cut(s) 1257
BseBI CCWGG 2 cut(s) 198, 763
BseCI ATCGAT 1 cut(s) 1544
BseDI CCNNGG 5 cut(s) 232, 265, 424, 762, 1289
BseGI GGATG 5 cut(s) 215, 420, 673, 1069, 1220
BseJI GATNNNNATC 1 cut(s) 1257
BseLI CCNNNNNNNGG 4 cut(s) 221, 425, 541, 637
BseMI GCAATG 2 cut(s) 286, 504
BseMII CTCAG 2 cut(s) 644, 862
BseRI GAGGAG 2 cut(s) 867, 870
BseSI GKGCMC 1 cut(s) 1164
BseXI GCAGC 3 cut(s) 572, 856, 1498
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 2 cut(s) 214, 999
BshVI ATCGAT 1 cut(s) 1544
BsiHKAI GWGCWC 2 cut(s) 363, 1164
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 4 cut(s) 462, 527, 665, 1364
BslI CCNNNNNNNGG 4 cut(s) 221, 425, 541, 637
BsmAI GTCTC 2 cut(s) 221, 950
BsmI GAATGC 2 cut(s) 429, 442
BsnI GGCC 2 cut(s) 214, 999
Bso31I GGTCTC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 2 cut(s) 363, 1164
Bsp143I GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
Bsp1720I GCTNAGC 1 cut(s) 82
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 3 cut(s) 180, 674, 753
BspANI GGCC 2 cut(s) 214, 999
BspCNI CTCAG 2 cut(s) 645, 861
BspDI ATCGAT 1 cut(s) 1544
BspFNI CGCG 1 cut(s) 368
BspHI TCATGA 1 cut(s) 1264
BspLI GGNNCC 2 cut(s) 751, 1254
BspOI GCTAGC 1 cut(s) 680
BspPI GGATC 4 cut(s) 1247, 1260, 1280, 1357
BspTNI GGTCTC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 286, 504
BsrFI RCCGGY 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 5 cut(s) 232, 265, 424, 762, 1289
BssMI GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
BssNI GRCGYC 1 cut(s) 1182
BssT1I CCWWGG 3 cut(s) 232, 424, 1289
Bst2UI CCWGG 2 cut(s) 198, 763
Bst4CI ACNGT 3 cut(s) 457, 885, 1336
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 1182
BstAPI GCANNNNNTGC 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 1471
BstC8I GCNNGC 3 cut(s) 406, 467, 678
BstDEI CTNAG 7 cut(s) 82, 482, 516, 653, 848, 871, 1418
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 5 cut(s) 215, 420, 673, 1069, 1220
BstFNI CGCG 1 cut(s) 368
BstHHI GCGC 2 cut(s) 1006, 1246
BstKTI GATC 6 cut(s) 169, 1255, 1261, 1288, 1352, 1522
BstMAI GTCTC 2 cut(s) 221, 950
BstMBI GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
BstMWI GCNNNNNNNGC 4 cut(s) 448, 773, 1010, 1376
BstNI CCWGG 2 cut(s) 198, 763
BstSCI CCNGG 3 cut(s) 196, 761, 1363
BstSLI GKGCMC 1 cut(s) 1164
BstUI CGCG 1 cut(s) 368
BstV1I GCAGC 3 cut(s) 572, 856, 1498
BstV2I GAAGAC 2 cut(s) 589, 870
BstX2I RGATCY 2 cut(s) 1252, 1258
BstXI CCANNNNNNTGG 1 cut(s) 1215
BstYI RGATCY 2 cut(s) 1252, 1258
Bsu15I ATCGAT 1 cut(s) 1544
BsuRI GGCC 2 cut(s) 214, 999
BsuTUI ATCGAT 1 cut(s) 1544
BtgI CCRYGG 1 cut(s) 424
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 5 cut(s) 215, 420, 673, 1069, 1220
BtsIMutI CAGTG 2 cut(s) 453, 1341
Cac8I GCNNGC 3 cut(s) 406, 467, 678
CaiI CAGNNNCTG 1 cut(s) 553
CciI TCATGA 1 cut(s) 1264
CfoI GCGC 2 cut(s) 1006, 1246
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 1544
CspCI CAANNNNNGTGG 2 cut(s) 1264, 1299
CviAII CATG 7 cut(s) 164, 205, 348, 425, 712, 1001, 1265
DdeI CTNAG 7 cut(s) 82, 482, 516, 653, 848, 871, 1418
DpnI GATC 6 cut(s) 168, 1254, 1260, 1287, 1351, 1521
DpnII GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
DraI TTTAAA 3 cut(s) 313, 1192, 1312
DrdI GACNNNNNNGTC 1 cut(s) 973
DseDI GACNNNNNNGTC 1 cut(s) 973
EaeI YGGCCR 1 cut(s) 997
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 3 cut(s) 232, 424, 1289
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 1500
Eco88I CYCGRG 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 361
EcoRI GAATTC 1 cut(s) 1196
EcoRII CCWGG 2 cut(s) 196, 761
EcoT14I CCWWGG 3 cut(s) 232, 424, 1289
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 3 cut(s) 232, 424, 1289
FaeI CATG 7 cut(s) 167, 208, 351, 428, 715, 1004, 1268
FalI AAGNNNNNCTT 4 cut(s) 378, 410, 775, 807
FatI CATG 7 cut(s) 163, 204, 347, 424, 711, 1000, 1264
FauI CCCGC 1 cut(s) 187
FauNDI CATATG 1 cut(s) 1248
FbaI TGATCA 1 cut(s) 166
FblI GTMKAC 2 cut(s) 987, 1179
Fnu4HI GCNGC 4 cut(s) 586, 674, 845, 1512
FokI GGATG 5 cut(s) 222, 407, 680, 1076, 1227
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 4 cut(s) 586, 674, 845, 1512
FspBI CTAG 5 cut(s) 110, 294, 677, 777, 837
GlaI GCGC 2 cut(s) 1005, 1245
GluI GCNGC 4 cut(s) 586, 674, 845, 1512
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 2 cut(s) 214, 999
HapII CCGG 4 cut(s) 462, 527, 665, 1364
HhaI GCGC 2 cut(s) 1006, 1246
Hin1I GRCGYC 1 cut(s) 1182
Hin1II CATG 7 cut(s) 167, 208, 351, 428, 715, 1004, 1268
Hin6I GCGC 2 cut(s) 1004, 1244
HinP1I GCGC 2 cut(s) 1004, 1244
HindIII AAGCTT 3 cut(s) 271, 392, 479
HinfI GANTC 5 cut(s) 24, 319, 572, 895, 1270
HpaII CCGG 4 cut(s) 462, 527, 665, 1364
HphI GGTGA 4 cut(s) 324, 451, 652, 1342
Hpy166II GTNNAC 6 cut(s) 332, 624, 643, 988, 1162, 1180
Hpy188I TCNGA 8 cut(s) 269, 549, 654, 851, 947, 1444, 1482, 1519
Hpy188III TCNNGA 7 cut(s) 294, 379, 684, 1201, 1212, 1256, 1265
Hpy8I GTNNAC 6 cut(s) 332, 624, 643, 988, 1162, 1180
Hpy99I CGWCG 1 cut(s) 911
HpyAV CCTTC 6 cut(s) 298, 659, 766, 1121, 1213, 1412
HpyCH4III ACNGT 3 cut(s) 457, 885, 1336
HpyCH4IV ACGT 3 cut(s) 876, 1182, 1470
HpyCH4V TGCA 4 cut(s) 8, 142, 1162, 1474
HpyF10VI GCNNNNNNNGC 4 cut(s) 448, 773, 1010, 1376
HpyF3I CTNAG 7 cut(s) 82, 482, 516, 653, 848, 871, 1418
HpySE526I ACGT 3 cut(s) 876, 1182, 1470
Hsp92I GRCGYC 1 cut(s) 1182
Hsp92II CATG 7 cut(s) 167, 208, 351, 428, 715, 1004, 1268
HspAI GCGC 2 cut(s) 1004, 1244
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
LmnI GCTCC 1 cut(s) 1367
Lsp1109I GCAGC 3 cut(s) 572, 856, 1498
MaeI CTAG 5 cut(s) 110, 294, 677, 777, 837
MaeII ACGT 3 cut(s) 876, 1182, 1470
MaeIII GTNAC 2 cut(s) 457, 1330
MalI GATC 6 cut(s) 168, 1254, 1260, 1287, 1351, 1521
MboI GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
MfeI CAATTG 1 cut(s) 1008
MflI RGATCY 2 cut(s) 1252, 1258
MhlI GDGCHC 2 cut(s) 363, 1164
MluI ACGCGT 1 cut(s) 366
MlyI GAGTC 2 cut(s) 581, 904
MmeI TCCRAC 2 cut(s) 282, 912
MroXI GAANNNNTTC 2 cut(s) 395, 442
MslI CAYNNNNRTG 1 cut(s) 1213
MspA1I CMGCKG 1 cut(s) 1511
MspI CCGG 4 cut(s) 462, 527, 665, 1364
MspR9I CCNGG 3 cut(s) 198, 763, 1365
MunI CAATTG 1 cut(s) 1008
Mva1269I GAATGC 2 cut(s) 429, 442
MvaI CCWGG 2 cut(s) 198, 763
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 4 cut(s) 448, 773, 1010, 1376
NciI CCSGG 1 cut(s) 1365
NcoI CCATGG 1 cut(s) 424
NdeI CATATG 1 cut(s) 1248
NdeII GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
NheI GCTAGC 1 cut(s) 676
NlaIII CATG 7 cut(s) 167, 208, 351, 428, 715, 1004, 1268
NlaIV GGNNCC 2 cut(s) 751, 1254
NmeAIII GCCGAG 1 cut(s) 975
NmuCI GTSAC 2 cut(s) 457, 1330
PaeR7I CTCGAG 1 cut(s) 682
PagI TCATGA 1 cut(s) 1264
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PctI GAATGC 2 cut(s) 429, 442
PdmI GAANNNNTTC 2 cut(s) 395, 442
PfeI GAWTC 3 cut(s) 24, 319, 1270
PfoI TCCNGGA 2 cut(s) 196, 1363
PkrI GCNGC 4 cut(s) 587, 675, 846, 1513
PleI GAGTC 2 cut(s) 580, 903
PpsI GAGTC 2 cut(s) 580, 903
Ppu21I YACGTR 1 cut(s) 1471
PshBI ATTAAT 1 cut(s) 1302
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 196, 761
PspGI CCWGG 2 cut(s) 196, 761
PspN4I GGNNCC 2 cut(s) 751, 1254
PspPI GGNCC 1 cut(s) 213
PstNI CAGNNNCTG 1 cut(s) 553
PsuI RGATCY 2 cut(s) 1252, 1258
PvuII CAGCTG 1 cut(s) 1511
RseI CAYNNNNRTG 1 cut(s) 1213
SacI GAGCTC 1 cut(s) 363
SatI GCNGC 4 cut(s) 586, 674, 845, 1512
Sau3AI GATC 6 cut(s) 166, 1252, 1258, 1285, 1349, 1519
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 2 cut(s) 581, 904
ScrFI CCNGG 3 cut(s) 198, 763, 1365
SduI GDGCHC 2 cut(s) 363, 1164
Sfr274I CTCGAG 1 cut(s) 682
SgrAI CRCCGGYG 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 1213
SmlI CTYRAG 2 cut(s) 356, 682
SmoI CTYRAG 2 cut(s) 356, 682
SsiI CCGC 3 cut(s) 180, 674, 753
SspI AATATT 3 cut(s) 123, 147, 690
SspMI CTAG 5 cut(s) 110, 294, 677, 777, 837
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 3 cut(s) 196, 761, 1363
StyI CCWWGG 3 cut(s) 232, 424, 1289
TaaI ACNGT 3 cut(s) 457, 885, 1336
TaiI ACGT 3 cut(s) 879, 1185, 1473
TaqI TCGA 4 cut(s) 317, 683, 887, 1544
TauI GCSGC 1 cut(s) 676
TfiI GAWTC 3 cut(s) 24, 319, 1270
TscAI CASTG 2 cut(s) 460, 1341
TseFI GTSAC 2 cut(s) 457, 1330
TseI GCWGC 3 cut(s) 585, 844, 1511
Tsp45I GTSAC 2 cut(s) 457, 1330
TspDTI ATGAA 7 cut(s) 336, 461, 493, 1140, 1253, 1383, 1394
TspGWI ACGGA 2 cut(s) 620, 917
TspRI CASTG 2 cut(s) 460, 1341
VneI GTGCAC 1 cut(s) 1160
VspI ATTAAT 1 cut(s) 1302
XapI RAATTY 3 cut(s) 1154, 1187, 1196
XbaI TCTAGA 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XhoI CTCGAG 1 cut(s) 682
XmiI GTMKAC 2 cut(s) 987, 1179
XmnI GAANNNNTTC 2 cut(s) 395, 442
XspI CTAG 5 cut(s) 110, 294, 677, 777, 837
ZraI GACGTC 1 cut(s) 1183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.