Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001046.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

20540 .. 23004

Gene Structure 2465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001046.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgcgaggctttgtttctctgtcgataaatctacccggaaccgcttatgccaaggctgttaaggctagagcgaggctttcttcgattgtcaaggagattatggaaggaaggcgaaaacggagaatcggagagcttgcagaattaggagaaggagaagtggactttttagacgcgatactgtcgaaacaaagcctaaacgacgatgaaatagtaagcattctgttggacataatgctgggagggtacgagaccacctcaacgctaatggccttgattgtcgactttcttcatcattcgccaattgcttttgccaaatcaaaggaagaacaccaagctataaggctaggaaaaacaaagaggatgagagtgctcccttggactggaaagattacaagaaaatggaagctggtcataccgtccggatggaaggttcttccgatcttcaccgcatcacatatggatccagatcttcacgataatccggcacaatttgatccttcaagatggactagcgatcattacaaagaaatgagcagaaaagtgactccgtttgggggaggagcaaggctttgtccaggagctgagcccgctaaagacaccatcaagtattggtgtgagtttactacaattgacaccattcatcacattagccactatgcagccacccttcaaatgtcagtcccctttgatccagtttctaaagagacaaagagcactaatcctaatggtgccatgacaaccatcatcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

250

Amino Acids

27.96

Weight (kDa)

9.13

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	419
AciI	CCGC	3 cut(s)	42, 447, 588
AclWI	GGATC	4 cut(s)	455, 468, 488, 683
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	380, 554
AgsI	TTSAA	2 cut(s)	501, 671
AjnI	CCWGG	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	4 cut(s)	133, 335, 406, 581
AluI	AGCT	4 cut(s)	133, 335, 406, 581
Alw21I	GWGCWC	2 cut(s)	372, 716
Alw26I	GTCTC	2 cut(s)	242, 698
AlwI	GGATC	4 cut(s)	455, 468, 488, 683
AlwNI	CAGNNNCTG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	419
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	659
AsuC2I	CCSGG	1 cut(s)	36
AsuHPI	GGTGA	2 cut(s)	436, 739
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	588
Bbv12I	GWGCWC	2 cut(s)	372, 716
BbvI	GCAGC	1 cut(s)	671
BccI	CCATC	4 cut(s)	417, 498, 608, 749
BciT130I	CCWGG	1 cut(s)	576
BcnI	CCSGG	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	242, 698
BfaI	CTAG	3 cut(s)	66, 344, 510
BglII	AGATCT	1 cut(s)	466
BisI	GCNGC	1 cut(s)	660
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	661
Bme1390I	CCNGG	2 cut(s)	36, 576
BmiI	GGNNCC	3 cut(s)	40, 462, 730
BmrFI	CCNGG	2 cut(s)	36, 576
BmsI	GCATC	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu1102I	GCTNAGC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	51, 374
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 554
Bse1I	ACTGG	2 cut(s)	385, 692
Bse8I	GATNNNNATC	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	51, 374
BseGI	GGATG	2 cut(s)	366, 428
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	2 cut(s)	380, 554
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	2 cut(s)	385, 692
BseRI	GAGGAG	1 cut(s)	573
BseXI	GCAGC	1 cut(s)	671
BseYI	CCCAGC	1 cut(s)	235
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	728
BsiHKAI	GWGCWC	2 cut(s)	372, 716
BsiSI	CCGG	3 cut(s)	36, 420, 482
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	2 cut(s)	380, 554
BsmAI	GTCTC	2 cut(s)	242, 698
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	269
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	372, 588, 716
Bsp13I	TCCGGA	1 cut(s)	419
Bsp143I	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	3 cut(s)	42, 447, 588
BspANI	GGCC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	574
BspEI	TCCGGA	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	3 cut(s)	40, 462, 730
BspPI	GGATC	4 cut(s)	455, 468, 488, 683
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	385, 692
BssECI	CCNNGG	2 cut(s)	51, 374
BssMI	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
BssT1I	CCWWGG	2 cut(s)	51, 374
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	180, 417
BstC8I	GCNNGC	2 cut(s)	135, 588
BstDEI	CTNAG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	366, 428
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	6 cut(s)	441, 463, 469, 496, 517, 691
BstMAI	GTCTC	2 cut(s)	242, 698
BstMBI	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 587
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	2 cut(s)	34, 574
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	671
BstX2I	RGATCY	2 cut(s)	460, 466
BstYI	RGATCY	2 cut(s)	460, 466
BsuRI	GGCC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	366, 428
Cac8I	GCNNGC	2 cut(s)	135, 588
CaiI	CAGNNNCTG	1 cut(s)	581
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	1 cut(s)	733
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	582
DpnI	GATC	6 cut(s)	440, 462, 468, 495, 516, 690
DpnII	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
Eco130I	CCWWGG	2 cut(s)	51, 374
Eco24I	GRGCYC	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	2 cut(s)	51, 374
EcoT38I	GRGCYC	1 cut(s)	588
ErhI	CCWWGG	2 cut(s)	51, 374
FaeI	CATG	1 cut(s)	736
FaiI	YATR	9 cut(s)	48, 101, 230, 338, 413, 456, 458, 657, 734
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	1 cut(s)	732
FauI	CCCGC	1 cut(s)	595
FauNDI	CATATG	1 cut(s)	456
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	660
FokI	GGATG	2 cut(s)	373, 435
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	1 cut(s)	660
FspBI	CTAG	3 cut(s)	66, 344, 510
GluI	GCNGC	1 cut(s)	660
GsaI	CCCAGC	1 cut(s)	239
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	3 cut(s)	36, 420, 482
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	736
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	123, 544
HpaII	CCGG	3 cut(s)	36, 420, 482
HphI	GGTGA	2 cut(s)	436, 739
Hpy166II	GTNNAC	3 cut(s)	160, 280, 621
Hpy188I	TCNGA	2 cut(s)	128, 438
Hpy188III	TCNNGA	4 cut(s)	420, 464, 473, 501
Hpy8I	GTNNAC	3 cut(s)	160, 280, 621
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	6 cut(s)	98, 102, 143, 421, 507, 677
HpyCH4III	ACNGT	2 cut(s)	180, 417
HpyCH4V	TGCA	2 cut(s)	137, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 587
HpyF3I	CTNAG	1 cut(s)	582
Hsp92II	CATG	1 cut(s)	736
Kpn2I	TCCGGA	1 cut(s)	419
Kzo9I	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
LmnI	GCTCC	3 cut(s)	375, 560, 578
Lsp1109I	GCAGC	1 cut(s)	671
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	3 cut(s)	66, 344, 510
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	6 cut(s)	440, 462, 468, 495, 516, 690
MboI	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
MboII	GAAGA	6 cut(s)	72, 278, 335, 425, 433, 461
MfeI	CAATTG	2 cut(s)	300, 627
MflI	RGATCY	2 cut(s)	460, 466
MhlI	GDGCHC	3 cut(s)	372, 588, 716
MluCI	AATT	4 cut(s)	140, 300, 488, 627
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	66, 233, 265, 351, 551
MroI	TCCGGA	1 cut(s)	419
MseI	TTAA	1 cut(s)	60
MspI	CCGG	3 cut(s)	36, 420, 482
MspR9I	CCNGG	2 cut(s)	36, 576
MunI	CAATTG	2 cut(s)	300, 627
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	62, 587
NciI	CCSGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
NlaIII	CATG	1 cut(s)	736
NlaIV	GGNNCC	3 cut(s)	40, 462, 730
NmuCI	GTSAC	1 cut(s)	541
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	123
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	661
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	574
PspFI	CCCAGC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	3 cut(s)	40, 462, 730
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	460, 466
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	660
Sau3AI	GATC	6 cut(s)	438, 460, 466, 493, 514, 688
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	36, 576
SduI	GDGCHC	3 cut(s)	372, 588, 716
SetI	ASST	7 cut(s)	135, 257, 337, 408, 432, 583, 752
SfaNI	GCATC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	140, 300, 488, 627
SsiI	CCGC	3 cut(s)	42, 447, 588
SspMI	CTAG	3 cut(s)	66, 344, 510
StyD4I	CCNGG	2 cut(s)	34, 574
StyI	CCWWGG	2 cut(s)	51, 374
TaaI	ACNGT	2 cut(s)	180, 417
TaqI	TCGA	4 cut(s)	23, 83, 182, 279
TasI	AATT	4 cut(s)	140, 300, 488, 627
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	659
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	219, 278, 629
TspGWI	ACGGA	2 cut(s)	133, 537
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	3 cut(s)	66, 344, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.