Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

98307 .. 98825

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggccggtttttggcgaaactcttcacttcctcaagcctcattcttcggattctcccggaaccttcctgcaacaaactgctctgggtatgggaaggttttcaagtcgcatctatttggttcgccgaccatagtttcgtgcgaccttgagctcaacatgttcgttcttcagaacgaagagaagctcttccaagccagttacccaaaaccggtccttggcattctcgggaagtactctttgctcaccgtctccggtgaccttcaccggaagctaaggaacattggcgtcagcttcatcgcctcttccaagtcctcgcctcattttcttcactggattgagaagctctcgatctcgatgatggactcgtggagtggccgaaatcaagtctctttcttcaaagaagctaaaactgtacattcactagtctcaagcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

145

Amino Acids

16.22

Weight (kDa)

9.7

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 373
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	233, 414
AfiI	CCNNNNNNNGG	3 cut(s)	12, 208, 215
AflIII	ACRYGT	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	103, 397
AhlI	ACTAGT	1 cut(s)	421
AluBI	AGCT	7 cut(s)	151, 184, 271, 291, 343, 404, 432
AluI	AGCT	7 cut(s)	151, 184, 271, 291, 343, 404, 432
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	3 cut(s)	253, 391, 430
Ama87I	CYCGRG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	3, 373
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsiGI	ACCGGT	1 cut(s)	208
Asp700I	GAANNNNTTC	3 cut(s)	22, 98, 185
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	3 cut(s)	235, 254, 266
AvaI	CYCGRG	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	153
BccI	CCATC	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	58
BcoDI	GTCTC	3 cut(s)	253, 391, 430
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	1 cut(s)	211
BmeT110I	CYCGRG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu10I	CCTNAGC	1 cut(s)	272
BpuEI	CTTGAG	3 cut(s)	18, 167, 412
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	214
BsaWI	WCCGGW	3 cut(s)	208, 251, 264
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 208, 215
Bse118I	RCCGGY	2 cut(s)	5, 208
Bse1I	ACTGG	2 cut(s)	195, 335
BseDI	CCNNGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	3 cut(s)	12, 208, 215
BseNI	ACTGG	2 cut(s)	195, 335
BshFI	GGCC	2 cut(s)	5, 375
BshTI	ACCGGT	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	5 cut(s)	6, 58, 209, 252, 265
BslI	CCNNNNNNNGG	3 cut(s)	12, 208, 215
BsmAI	GTCTC	3 cut(s)	253, 391, 430
BsmBI	CGTCTC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	219
BsnI	GGCC	2 cut(s)	5, 375
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	348
BspANI	GGCC	2 cut(s)	5, 375
BspLI	GGNNCC	1 cut(s)	62
BspQI	GCTCTTC	1 cut(s)	191
BsrFI	RCCGGY	2 cut(s)	5, 208
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	195, 335
BssAI	RCCGGY	2 cut(s)	5, 208
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	348
BssNI	GRCGYC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	364
Bst4CI	ACNGT	2 cut(s)	247, 412
Bst6I	CTCTTC	4 cut(s)	28, 171, 191, 307
BstACI	GRCGYC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	412
BstDEI	CTNAG	1 cut(s)	272
BstEII	GGTNACC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	3 cut(s)	253, 391, 430
BstMBI	GATC	1 cut(s)	348
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	5, 375
BtgZI	GCGATG	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	5, 208
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	232, 413
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	1 cut(s)	157
CviQI	GTAC	2 cut(s)	232, 413
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	2 cut(s)	3, 373
Eam1104I	CTCTTC	4 cut(s)	28, 171, 191, 307
EarI	CTCTTC	4 cut(s)	28, 171, 191, 307
Ecl136II	GAGCTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	224
Eco91I	GGTNACC	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	254
EcoT14I	CCWWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	1 cut(s)	160
FaiI	YATR	3 cut(s)	90, 131, 158
FatI	CATG	1 cut(s)	156
FriOI	GRGCYC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	5, 375
HapII	CCGG	5 cut(s)	6, 58, 209, 252, 265
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	51, 362
HpaII	CCGG	5 cut(s)	6, 58, 209, 252, 265
HphI	GGTGA	3 cut(s)	235, 254, 266
Hpy188I	TCNGA	2 cut(s)	50, 171
Hpy188III	TCNNGA	3 cut(s)	226, 346, 352
HpyAV	CCTTC	3 cut(s)	74, 88, 269
HpyCH4III	ACNGT	2 cut(s)	247, 412
HpyCH4V	TGCA	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	348
LguI	GCTCTTC	1 cut(s)	191
LpnPI	CCDG	9 cut(s)	19, 69, 71, 81, 208, 222, 265, 278, 316
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	197, 254
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	8 cut(s)	15, 37, 158, 178, 188, 294, 317, 385
MhlI	GDGCHC	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	42, 49, 310, 322, 327
MroXI	GAANNNNTTC	3 cut(s)	22, 98, 185
MseI	TTAA	1 cut(s)	436
MspI	CCGG	5 cut(s)	6, 58, 209, 252, 265
MspR9I	CCNGG	1 cut(s)	58
Mva1269I	GAATGC	1 cut(s)	219
NciI	CCSGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	160
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	160
PciI	ACATGT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	191
PctI	GAATGC	1 cut(s)	219
PdmI	GAANNNNTTC	3 cut(s)	22, 98, 185
PfeI	GAWTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	56
PinAI	ACCGGT	1 cut(s)	208
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
PscI	ACATGT	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	153
PspEI	GGTNACC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	2 cut(s)	233, 414
RsaNI	GTAC	2 cut(s)	232, 413
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	436
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	211
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	118
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	3 cut(s)	33, 146, 427
SmoI	CTYRAG	3 cut(s)	33, 146, 427
SpeI	ACTAGT	1 cut(s)	421
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	247, 412
TaqI	TCGA	2 cut(s)	347, 353
TatI	WGTACW	2 cut(s)	231, 412
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TscAI	CASTG	1 cut(s)	335
TseFI	GTSAC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	160
XmnI	GAANNNNTTC	3 cut(s)	22, 98, 185
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.