Rw2G042230

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
68497033 .. 68500150
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042230.1

Sequence Viewer

Length: 1479 bp
ATGACTTTGTCCATGGCTGGAAGTAGTACTTTTTGGCTGCTTGTTCTGGTTGGTATGTTCTTCATCTTTCTTTTGGGTCGTCTCATTCTGAACCAGTACTCACCCTTGTTCTTAAGGGTTGGTCCTACTACACCTAAAGGCTCTTTCGGGTGGCCTGTTTTGGGTGAAACTCTTGCCTTCTTGAACCCTCATCCTTCTAATTCTCTTGGAGCTTTCCTTCAACACCATTGCTCTAGGTATGGGAAAGTGTTCAAATCCCATTTGTTCTTGTCCCCAACGATTGTGTCCTGTGACGAAGAGCTGAACTACTTCATACTTCAGAATGAAGGCAAGTTGTTTGAATGTAGCTACCCGAAACCCATCCACGGCATTCTCGGCAAGTCCTCAATGCTGGTGGCTGTGGGTGACACTCACAAAAGGCTCAGAAATGTGGCCGTCTCTCTGGTCACCATTACCAAATCCAAGCCTGAGTTTCTCCACGACATCGAGAACACTGCAGTTCGCGTTCTTCGGTCGTGGAAAGATAAACCACAAGTCATCTTCTGTAAAGAAGCTAGAAAGTTCACATTCAATGTAATAGTGAAGCAAGTGCTAGGTTTGAGCCCAGATGAGCCACAGACCACACAAATTCTTGAAGATTTTTTGACTTTCATGAAAGGGCTCATTTCTCTCCCTCTCTACATTCCTGGAACTCCTTATGCAAGAGCTGTGAAGGCTAGAATTAGGATATCTTCAACTGTGAAAGCAATCATAGAGGAAAGAAGAAGAAGAAGAACAAGAAGAAATGAAGATGGGATTAGTACTAATAAGTCTAGTAGTAGTAATAGTGATTTTCTTGAGATACTTCTGGATGTTGATACCTTATCTGAAGATGAAAAAGTGAGTTTCGTCTTGGATTCTCTACTGGGTGGGTACGAGACTACCTCTCTATTAATGGCCATGGTTGTTTATTTTCTAGCTCAATCACCCTCTGCATTACAACAATTAAAGGTTGAGCATCAGAATATTAGAAGGGTGAAGAAGAAAGATGAGTATTTGAACTGGGAAGACTATAGCAAAATGGAATTTACTCAAAACGTCATAAACGAAGCTATGAGATGTGGGAACATTGTAAAATTTGTGCACCGAAAGGCTCTCAAAGATGTGAAATTTAGAGATTATAAAATTCCATCAGGCTGGAAAGTTCTACCCGTCATTAGTGCTTCTCATTTGGACCCTTCTCTTCATGCAAATGCTCTCGAGTTTCATCCTTGGAGATGGGAGAGCGAAGATCAAATGTGCAAGAGATTCACTCCCTTTGGTGGAGGGTCTAGATGCTGTCCAGGATCTGAACTTGGGAGGCTTGAGGTTGCATTTTTTCTCCACCACCTTGTACAAAATTTCAGGTGGAGGACTGAGGATGATGAGCAACCTATAGCTTATCCGTACGTAGAATTCAAAAGAGGGTTGCCACTTTACTTGGAGGATTGCCCCATTTGA

Protein Analysis

492

Amino Acids

56.32

Weight (kDa)

9.02

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 45 - 471 5.7e-60 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1161
AccII CGCG 1 cut(s) 504
AclWI GGATC 1 cut(s) 1333
AcoI YGGCCR 2 cut(s) 432, 936
AcsI RAATTY 7 cut(s) 627, 1064, 1115, 1148, 1164, 1378, 1433
AcuI CTGAAG 2 cut(s) 302, 888
AfaI GTAC 6 cut(s) 28, 98, 802, 914, 1374, 1427
AfiI CCNNNNNNNGG 3 cut(s) 161, 365, 1301
AflII CTTAAG 1 cut(s) 112
AgsI TTSAA 9 cut(s) 184, 221, 253, 341, 571, 635, 735, 1039, 1438
AjnI CCWGG 2 cut(s) 685, 1321
AluBI AGCT 8 cut(s) 212, 301, 348, 554, 707, 959, 1091, 1418
AluI AGCT 8 cut(s) 212, 301, 348, 554, 707, 959, 1091, 1418
Alw21I GWGCWC 1 cut(s) 1125
Alw26I GTCTC 3 cut(s) 86, 442, 911
Alw44I GTGCAC 1 cut(s) 1121
AlwI GGATC 1 cut(s) 1333
AlwNI CAGNNNCTG 1 cut(s) 1328
Ama87I CYCGRG 1 cut(s) 1238
AoxI GGCC 3 cut(s) 152, 432, 936
ApaLI GTGCAC 1 cut(s) 1121
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 7 cut(s) 627, 1064, 1115, 1148, 1164, 1378, 1433
AseI ATTAAT 1 cut(s) 932
Asp700I GAANNNNTTC 2 cut(s) 248, 308
AspS9I GGNCC 2 cut(s) 122, 1213
AsuHPI GGTGA 6 cut(s) 93, 176, 416, 439, 957, 1027
AvaI CYCGRG 1 cut(s) 1238
AvaII GGWCC 2 cut(s) 122, 1213
BaeGI GKGCMC 1 cut(s) 1125
BalI TGGCCA 1 cut(s) 938
BanII GRGCYC 2 cut(s) 605, 663
BbsI GAAGAC 1 cut(s) 1053
Bbv12I GWGCWC 1 cut(s) 1125
BbvI GCAGC 1 cut(s) 24
BccI CCATC 4 cut(s) 368, 785, 1177, 1251
BceAI ACGGC 2 cut(s) 382, 419
BcgI CGANNNNNNTGC 2 cut(s) 476, 510
BciT130I CCWGG 2 cut(s) 687, 1323
BcoDI GTCTC 3 cut(s) 86, 442, 911
BfaI CTAG 7 cut(s) 234, 555, 593, 717, 813, 956, 1311
BfmI CTRYAG 3 cut(s) 495, 1051, 1413
BfrI CTTAAG 1 cut(s) 112
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
BmcAI AGTACT 3 cut(s) 28, 98, 802
Bme1390I CCNGG 2 cut(s) 687, 1323
Bme18I GGWCC 2 cut(s) 122, 1213
BmeT110I CYCGRG 1 cut(s) 1238
BmgT120I GGNCC 2 cut(s) 122, 1213
BmiI GGNNCC 1 cut(s) 1215
BmrFI CCNGG 2 cut(s) 687, 1323
BmrI ACTGGG 2 cut(s) 914, 1051
BmsI GCATC 2 cut(s) 1006, 1304
BmuI ACTGGG 2 cut(s) 914, 1051
BpiI GAAGAC 1 cut(s) 1053
BplI GAGNNNNNCTC 4 cut(s) 908, 940, 1276, 1308
BpuEI CTTGAG 2 cut(s) 857, 1364
BsaAI YACGTR 1 cut(s) 1429
BsaJI CCNNGG 4 cut(s) 12, 364, 939, 1250
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 365, 1301
Bse1I ACTGG 3 cut(s) 94, 909, 1046
Bse3DI GCAATG 1 cut(s) 226
BseBI CCWGG 2 cut(s) 687, 1323
BseDI CCNNGG 4 cut(s) 12, 364, 939, 1250
BseGI GGATG 5 cut(s) 190, 360, 856, 1246, 1405
BseLI CCNNNNNNNGG 3 cut(s) 161, 365, 1301
BseMI GCAATG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 436, 459, 1386
BseNI ACTGG 3 cut(s) 94, 909, 1046
BseSI GKGCMC 1 cut(s) 1125
BseXI GCAGC 1 cut(s) 24
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 515
BshFI GGCC 3 cut(s) 154, 434, 938
BsiEI CGRYCG 1 cut(s) 515
BsiHKAI GWGCWC 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 1238
BsiWI CGTACG 1 cut(s) 1425
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 3 cut(s) 161, 365, 1301
BsmAI GTCTC 3 cut(s) 86, 442, 911
BsmBI CGTCTC 2 cut(s) 86, 442
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 3 cut(s) 154, 434, 938
BsoBI CYCGRG 1 cut(s) 1238
Bsp1286I GDGCHC 3 cut(s) 605, 663, 1125
Bsp1407I TGTACA 1 cut(s) 1372
Bsp143I GATC 2 cut(s) 1270, 1325
Bsp19I CCATGG 2 cut(s) 12, 939
BspANI GGCC 3 cut(s) 154, 434, 938
BspCNI CTCAG 3 cut(s) 435, 460, 1387
BspFNI CGCG 1 cut(s) 504
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 1 cut(s) 1215
BspMAI CTGCAG 1 cut(s) 499
BspPI GGATC 1 cut(s) 1333
BspQI GCTCTTC 1 cut(s) 291
BspTI CTTAAG 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 226
BsrGI TGTACA 1 cut(s) 1372
BsrI ACTGG 3 cut(s) 94, 909, 1046
BssECI CCNNGG 4 cut(s) 12, 364, 939, 1250
BssMI GATC 2 cut(s) 1270, 1325
BssT1I CCWWGG 3 cut(s) 12, 939, 1250
Bst2UI CCWGG 2 cut(s) 687, 1323
Bst4CI ACNGT 1 cut(s) 739
Bst6I CTCTTC 2 cut(s) 291, 1227
BstAFI CTTAAG 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 1372
BstBAI YACGTR 1 cut(s) 1429
BstDEI CTNAG 3 cut(s) 422, 468, 1395
BstDSI CCRYGG 3 cut(s) 12, 364, 939
BstEII GGTNACC 1 cut(s) 445
BstF5I GGATG 5 cut(s) 190, 360, 856, 1246, 1405
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 2 cut(s) 1273, 1328
BstMAI GTCTC 3 cut(s) 86, 442, 911
BstMBI GATC 2 cut(s) 1270, 1325
BstMCI CGRYCG 1 cut(s) 515
BstMWI GCNNNNNNNGC 2 cut(s) 375, 713
BstNI CCWGG 2 cut(s) 687, 1323
BstPI GGTNACC 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 685, 1321
BstSFI CTRYAG 3 cut(s) 495, 1051, 1413
BstSLI GKGCMC 1 cut(s) 1125
BstSNI TACGTA 1 cut(s) 1429
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 1053
BstX2I RGATCY 1 cut(s) 1325
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 1 cut(s) 1325
BsuRI GGCC 3 cut(s) 154, 434, 938
BtgI CCRYGG 3 cut(s) 12, 364, 939
BtsCI GGATG 5 cut(s) 190, 360, 856, 1246, 1405
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 492
CaiI CAGNNNCTG 1 cut(s) 1328
CciI TCATGA 1 cut(s) 651
Cfr13I GGNCC 2 cut(s) 122, 1213
Csp6I GTAC 6 cut(s) 27, 97, 801, 913, 1373, 1426
CspCI CAANNNNNGTGG 4 cut(s) 375, 410, 1440, 1475
CviAII CATG 4 cut(s) 13, 652, 940, 1226
CviQI GTAC 6 cut(s) 27, 97, 801, 913, 1373, 1426
DdeI CTNAG 3 cut(s) 422, 468, 1395
DpnI GATC 2 cut(s) 1272, 1327
DpnII GATC 2 cut(s) 1270, 1325
EaeI YGGCCR 2 cut(s) 432, 936
Eam1104I CTCTTC 2 cut(s) 291, 1227
EarI CTCTTC 2 cut(s) 291, 1227
Eco105I TACGTA 1 cut(s) 1429
Eco130I CCWWGG 3 cut(s) 12, 939, 1250
Eco24I GRGCYC 2 cut(s) 605, 663
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 122, 1213
Eco57I CTGAAG 2 cut(s) 302, 888
Eco88I CYCGRG 1 cut(s) 1238
Eco91I GGTNACC 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 1433
EcoRII CCWGG 2 cut(s) 685, 1321
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 3 cut(s) 12, 939, 1250
EcoT38I GRGCYC 2 cut(s) 605, 663
ErhI CCWWGG 3 cut(s) 12, 939, 1250
Esp3I CGTCTC 2 cut(s) 86, 442
FaeI CATG 4 cut(s) 16, 655, 943, 1229
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 256
FatI CATG 4 cut(s) 12, 651, 939, 1225
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 5 cut(s) 177, 347, 863, 1233, 1412
FriOI GRGCYC 2 cut(s) 605, 663
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 7 cut(s) 234, 555, 593, 717, 813, 956, 1311
GluI GCNGC 1 cut(s) 38
HaeIII GGCC 3 cut(s) 154, 434, 938
Hin1II CATG 4 cut(s) 16, 655, 943, 1229
HinfI GANTC 2 cut(s) 896, 1287
HphI GGTGA 6 cut(s) 93, 176, 416, 439, 957, 1027
Hpy166II GTNNAC 2 cut(s) 564, 1123
Hpy188I TCNGA 6 cut(s) 90, 321, 425, 868, 1002, 1330
Hpy188III TCNNGA 8 cut(s) 181, 487, 632, 652, 836, 848, 1238, 1311
Hpy8I GTNNAC 2 cut(s) 564, 1123
HpyAV CCTTC 7 cut(s) 187, 204, 227, 320, 706, 1005, 1227
HpyCH4III ACNGT 1 cut(s) 739
HpyCH4IV ACGT 2 cut(s) 1077, 1428
HpyCH4V TGCA 7 cut(s) 497, 701, 974, 1123, 1229, 1281, 1352
HpyF10VI GCNNNNNNNGC 2 cut(s) 375, 713
HpyF3I CTNAG 3 cut(s) 422, 468, 1395
HpySE526I ACGT 2 cut(s) 1077, 1428
Hsp92II CATG 4 cut(s) 16, 655, 943, 1229
Kzo9I GATC 2 cut(s) 1270, 1325
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 1006, 1304
MaeI CTAG 7 cut(s) 234, 555, 593, 717, 813, 956, 1311
MaeII ACGT 2 cut(s) 1077, 1428
MaeIII GTNAC 3 cut(s) 290, 404, 445
MalI GATC 2 cut(s) 1272, 1327
MboI GATC 2 cut(s) 1270, 1325
MflI RGATCY 1 cut(s) 1325
MhlI GDGCHC 3 cut(s) 605, 663, 1125
MlsI TGGCCA 1 cut(s) 938
MluNI TGGCCA 1 cut(s) 938
Mox20I TGGCCA 1 cut(s) 938
MroXI GAANNNNTTC 2 cut(s) 248, 308
MscI TGGCCA 1 cut(s) 938
MseI TTAA 3 cut(s) 113, 932, 986
MslI CAYNNNNRTG 1 cut(s) 1230
Msp20I TGGCCA 1 cut(s) 938
MspCI CTTAAG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 687, 1323
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 687, 1323
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 2 cut(s) 375, 713
NcoI CCATGG 2 cut(s) 12, 939
NdeII GATC 2 cut(s) 1270, 1325
NlaIII CATG 4 cut(s) 16, 655, 943, 1229
NlaIV GGNNCC 1 cut(s) 1215
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 3 cut(s) 290, 404, 445
PaeR7I CTCGAG 1 cut(s) 1238
PagI TCATGA 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 291
PcsI WCGNNNNNNNCGW 1 cut(s) 1083
PctI GAATGC 1 cut(s) 369
PdmI GAANNNNTTC 2 cut(s) 248, 308
PfeI GAWTC 2 cut(s) 896, 1287
Pfl23II CGTACG 1 cut(s) 1425
PflFI GACNNNGTC 1 cut(s) 7
PfoI TCCNGGA 2 cut(s) 685, 1321
PkrI GCNGC 1 cut(s) 39
Ppu21I YACGTR 1 cut(s) 1429
PshBI ATTAAT 1 cut(s) 932
PsiI TTATAA 1 cut(s) 1161
Psp6I CCWGG 2 cut(s) 685, 1321
PspEI GGTNACC 1 cut(s) 445
PspGI CCWGG 2 cut(s) 685, 1321
PspLI CGTACG 1 cut(s) 1425
PspN4I GGNNCC 1 cut(s) 1215
PspPI GGNCC 2 cut(s) 122, 1213
PstI CTGCAG 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 1328
PsuI RGATCY 1 cut(s) 1325
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 6 cut(s) 28, 98, 802, 914, 1374, 1427
RsaNI GTAC 6 cut(s) 27, 97, 801, 913, 1373, 1426
RseI CAYNNNNRTG 1 cut(s) 1230
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 3 cut(s) 113, 932, 986
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 1270, 1325
Sau96I GGNCC 2 cut(s) 122, 1213
ScaI AGTACT 3 cut(s) 28, 98, 802
ScrFI CCNGG 2 cut(s) 687, 1323
SduI GDGCHC 3 cut(s) 605, 663, 1125
SfaNI GCATC 2 cut(s) 1006, 1304
SfcI CTRYAG 3 cut(s) 495, 1051, 1413
Sfr274I CTCGAG 1 cut(s) 1238
SinI GGWCC 2 cut(s) 122, 1213
SlaI CTCGAG 1 cut(s) 1238
SmiMI CAYNNNNRTG 1 cut(s) 1230
SmlI CTYRAG 4 cut(s) 112, 836, 1238, 1343
SmoI CTYRAG 4 cut(s) 112, 836, 1238, 1343
SnaBI TACGTA 1 cut(s) 1429
SspI AATATT 1 cut(s) 1006
SspMI CTAG 7 cut(s) 234, 555, 593, 717, 813, 956, 1311
StyD4I CCNGG 2 cut(s) 685, 1321
StyI CCWWGG 3 cut(s) 12, 939, 1250
TaaI ACNGT 1 cut(s) 739
TaiI ACGT 2 cut(s) 1080, 1431
TaqI TCGA 2 cut(s) 486, 1239
TaqII GACCGA 1 cut(s) 501
TatI WGTACW 4 cut(s) 26, 96, 800, 1372
TfiI GAWTC 2 cut(s) 896, 1287
Tru1I TTAA 3 cut(s) 113, 932, 986
Tru9I TTAA 3 cut(s) 113, 932, 986
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 3 cut(s) 290, 404, 445
TseI GCWGC 1 cut(s) 37
Tsp45I GTSAC 3 cut(s) 290, 404, 445
TspDTI ATGAA 9 cut(s) 52, 301, 339, 640, 668, 801, 888, 1214, 1235
TspGWI ACGGA 1 cut(s) 1413
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 7
Vha464I CTTAAG 1 cut(s) 112
VneI GTGCAC 1 cut(s) 1121
VpaK11BI GGWCC 2 cut(s) 122, 1213
VspI ATTAAT 1 cut(s) 932
XapI RAATTY 7 cut(s) 627, 1064, 1115, 1148, 1164, 1378, 1433
XbaI TCTAGA 1 cut(s) 1310
XhoI CTCGAG 1 cut(s) 1238
XmnI GAANNNNTTC 2 cut(s) 248, 308
XspI CTAG 7 cut(s) 234, 555, 593, 717, 813, 956, 1311
ZrmI AGTACT 3 cut(s) 28, 98, 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.