Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

69751768 .. 69753283

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0571300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGGCACAGGCAAACTCAAACTCACTGAAAGTAGTTGAGGTTTGCAGAGTAGCTCCGCAACCAATCTCACCAGACTCACCCATACCAGATCATTTCTCCCTTCCTCTAACCTTCTTTGACATACACTGGCTAAGATTGAAACCCATTCAAAGGATTTTCTTCTATGAAACATCTTCCACTGATACCATACTTCCCAAACTCAAAACCTCACTATCTCTCACCCTCCAACACTTCCTACCACTAGCAGGAACCTTAACTTGGCCCCAAGACTCCTCCAAATCCATTCTCAACTATGTTTTAGGTGACACCGTTGCACTCACAATAGCCGAGTCTGAAGCTGATTTCCACCATCTTTCAAGCAATGAATATCTCCAATCCAAAGAGTACCATCCTCTTGTTCCCCAATTGGCAGTGACTAGTGAACGAGCTGCGGTGTTGGCAGTGCAAATCACTGTCTTTCCCAACCATGGGTTTTCCATTGGAACCTGCATGCACCATGCCGTGCTTGATGGCAAATCTTCAACCATGTTTTTCAAATCCTGGGCTCACATATGCAAACATGGTTCAGCTGTTTCGTTGCCGGATCAGCTGAAACCATGTTACAGTGACAGACAGGCCATCAAGGACCCGATGGGGCTCGAAGCAATCTACTCGAATGACTGGTTGAGATTTGGGGGGTCTAACAAAAGAAGCTTACTGTTTCGGGAGACTAAATATTCACCGGGCACAATTCGAGGTACGTTTGAATTCACTCAAGCGAATATACAAAAACTTAGAGGACATGTCAAGACTGCAGTGGATTCTGATTCAGCTCATCTGTCATCATTTTCTCTAACATGTGGCTATACATGGGCTTGCTTAGTCAAGGCAGAAGAAATAAAATCTGACCAAGTATGGATAGTCTTTAGTGTGGACTGTAGGTCTCGCTTAGACCCTCCAGTTTCGGCAACATACTTTGGGAACTGCATTATAGGTCATATAGCAGTTGCAGAAACAAAAGGACTCTTAGGAGAAGATGGGTGGATTGTAGCTGTGAATGCAATTAGTGAAAGTATAAAGGCTTTGGATGGAAGTAGGGGACTTTTCAATGGGGCAGAGACTTGGGTTTCAAAGATGTGCAGTGCGAAGGGGACTGAGAGATTTTTTTCGGTAGCTGGTTCAAGTAGGTTTGAGATTTATGACACGAATTTTGGATGGGGAAGACCAAAAAAGACTGACGTTGTTTCCATAGATATGACAGGAGCAATCTCACTCTCGGATAGCAGGAATGGTGGTGGTGGTGTTGAGGTTGGGCTGGTTTTGAAAGAATCAAATATGGAAGTATTTGCTTCTCTATTTGCTAGAGGTCTTGAAGACCTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

454

Amino Acids

49.91

Weight (kDa)

6.4

Isoelectric Point (pI)

35.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	20 - 444	3.9e-55	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	494
AciI	CCGC	2 cut(s)	56, 431
AclWI	GGATC	1 cut(s)	591
AcsI	RAATTY	2 cut(s)	746, 1186
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	386, 739
AfiI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
AflIII	ACRYGT	2 cut(s)	781, 836
AhdI	GACNNNNNGTC	1 cut(s)	919
AhlI	ACTAGT	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	539
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	9 cut(s)	53, 338, 428, 569, 589, 693, 812, 1031, 1154
AluI	AGCT	9 cut(s)	53, 338, 428, 569, 589, 693, 812, 1031, 1154
Alw26I	GTCTC	3 cut(s)	701, 927, 1091
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	2 cut(s)	260, 615
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	2 cut(s)	746, 1186
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
AspS9I	GGNCC	2 cut(s)	261, 625
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	5 cut(s)	60, 69, 211, 314, 711
AvaII	GGWCC	1 cut(s)	625
BaeGI	GKGCMC	1 cut(s)	728
BanII	GRGCYC	2 cut(s)	547, 639
BbsI	GAAGAC	2 cut(s)	1207, 1359
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	8 cut(s)	357, 396, 503, 625, 626, 1010, 1061, 1188
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	633, 667
BciT130I	CCWGG	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	3 cut(s)	701, 927, 1091
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	3 cut(s)	242, 417, 1341
BfmI	CTRYAG	2 cut(s)	792, 916
BfuAI	ACCTGC	1 cut(s)	494
BisI	GCNGC	1 cut(s)	429
BlsI	GCNGC	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	541, 723
Bme18I	GGWCC	1 cut(s)	625
BmeRI	GACNNNNNGTC	1 cut(s)	919
BmgT120I	GGNCC	2 cut(s)	261, 625
BmiI	GGNNCC	4 cut(s)	250, 263, 484, 627
BmrFI	CCNGG	2 cut(s)	541, 723
BpiI	GAAGAC	2 cut(s)	1207, 1359
BpmI	CTGGAG	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	738
BpuMI	CCSGG	1 cut(s)	723
BsaI	GGTCTC	1 cut(s)	927
BsaJI	CCNNGG	2 cut(s)	466, 540
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
Bse1I	ACTGG	3 cut(s)	131, 665, 938
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	541
BseDI	CCNNGG	2 cut(s)	466, 540
BseGI	GGATG	3 cut(s)	388, 1072, 1199
BseLI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	1125
BseNI	ACTGG	3 cut(s)	131, 665, 938
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	728
BseXI	GCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	1138
BshFI	GGCC	2 cut(s)	262, 617
BsiSI	CCGG	2 cut(s)	581, 722
BslFI	GGGAC	2 cut(s)	1092, 1144
BslI	CCNNNNNNNGG	5 cut(s)	150, 245, 258, 467, 468
BsmAI	GTCTC	3 cut(s)	701, 927, 1091
BsmFI	GGGAC	2 cut(s)	1092, 1144
BsmI	GAATGC	1 cut(s)	1042
BsnI	GGCC	2 cut(s)	262, 617
Bso31I	GGTCTC	1 cut(s)	927
Bsp1286I	GDGCHC	3 cut(s)	547, 639, 728
Bsp143I	GATC	2 cut(s)	88, 583
Bsp19I	CCATGG	1 cut(s)	466
BspACI	CCGC	2 cut(s)	56, 431
BspANI	GGCC	2 cut(s)	262, 617
BspCNI	CTCAG	1 cut(s)	1126
BspLI	GGNNCC	4 cut(s)	250, 263, 484, 627
BspMAI	CTGCAG	1 cut(s)	796
BspMI	ACCTGC	1 cut(s)	494
BspPI	GGATC	1 cut(s)	591
BspTNI	GGTCTC	1 cut(s)	927
BsrDI	GCAATG	1 cut(s)	367
BsrI	ACTGG	3 cut(s)	131, 665, 938
BssECI	CCNNGG	2 cut(s)	466, 540
BssMI	GATC	2 cut(s)	88, 583
BssT1I	CCWWGG	1 cut(s)	466
Bst2UI	CCWGG	1 cut(s)	541
Bst4CI	ACNGT	5 cut(s)	310, 454, 605, 699, 917
BstC8I	GCNNGC	2 cut(s)	491, 856
BstDEI	CTNAG	6 cut(s)	131, 773, 859, 928, 1006, 1134
BstDSI	CCRYGG	1 cut(s)	466
BstF5I	GGATG	3 cut(s)	388, 1072, 1199
BstKTI	GATC	2 cut(s)	91, 586
BstMAI	GTCTC	3 cut(s)	701, 927, 1091
BstMBI	GATC	2 cut(s)	88, 583
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 586, 1037
BstNI	CCWGG	1 cut(s)	541
BstNSI	RCATGY	3 cut(s)	493, 785, 840
BstSCI	CCNGG	2 cut(s)	539, 721
BstSFI	CTRYAG	2 cut(s)	792, 916
BstSLI	GKGCMC	1 cut(s)	728
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	2 cut(s)	1207, 1359
BsuRI	GGCC	2 cut(s)	262, 617
BtgI	CCRYGG	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	388, 1072, 1199
BtsI	GCAGTG	4 cut(s)	417, 447, 801, 1126
BtsIMutI	CAGTG	9 cut(s)	23, 124, 177, 417, 447, 450, 610, 801, 1126
BveI	ACCTGC	1 cut(s)	494
Cac8I	GCNNGC	2 cut(s)	491, 856
Cfr13I	GGNCC	2 cut(s)	261, 625
Csp6I	GTAC	2 cut(s)	385, 738
CviAII	CATG	9 cut(s)	467, 490, 497, 526, 560, 597, 782, 837, 849
CviQI	GTAC	2 cut(s)	385, 738
DdeI	CTNAG	6 cut(s)	131, 773, 859, 928, 1006, 1134
DpnI	GATC	2 cut(s)	90, 585
DpnII	GATC	2 cut(s)	88, 583
DriI	GACNNNNNGTC	1 cut(s)	919
Eam1105I	GACNNNNNGTC	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	466
Eco24I	GRGCYC	2 cut(s)	547, 639
Eco31I	GGTCTC	1 cut(s)	927
Eco47I	GGWCC	1 cut(s)	625
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	625
EcoRI	GAATTC	1 cut(s)	746
EcoRII	CCWGG	1 cut(s)	539
EcoT14I	CCWWGG	1 cut(s)	466
EcoT38I	GRGCYC	2 cut(s)	547, 639
ErhI	CCWWGG	1 cut(s)	466
FaeI	CATG	9 cut(s)	470, 493, 500, 529, 563, 600, 785, 840, 852
FaqI	GGGAC	2 cut(s)	1092, 1144
FatI	CATG	9 cut(s)	466, 489, 496, 525, 559, 596, 781, 836, 848
FauNDI	CATATG	1 cut(s)	551
Fnu4HI	GCNGC	1 cut(s)	429
FokI	GGATG	3 cut(s)	375, 1079, 1206
FriOI	GRGCYC	2 cut(s)	547, 639
Fsp4HI	GCNGC	1 cut(s)	429
FspBI	CTAG	3 cut(s)	242, 417, 1341
GluI	GCNGC	1 cut(s)	429
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	262, 617
HapII	CCGG	2 cut(s)	581, 722
Hin1II	CATG	9 cut(s)	470, 493, 500, 529, 563, 600, 785, 840, 852
HindIII	AAGCTT	1 cut(s)	691
HinfI	GANTC	7 cut(s)	74, 269, 329, 800, 806, 1002, 1307
HpaII	CCGG	2 cut(s)	581, 722
HphI	GGTGA	5 cut(s)	60, 69, 211, 314, 711
Hpy166II	GTNNAC	2 cut(s)	422, 913
Hpy188I	TCNGA	4 cut(s)	334, 805, 886, 1258
Hpy188III	TCNNGA	3 cut(s)	704, 787, 1349
Hpy8I	GTNNAC	2 cut(s)	422, 913
HpyAV	CCTTC	3 cut(s)	110, 121, 1120
HpyCH4III	ACNGT	5 cut(s)	310, 454, 605, 699, 917
HpyCH4IV	ACGT	2 cut(s)	740, 1218
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 586, 1037
HpyF3I	CTNAG	6 cut(s)	131, 773, 859, 928, 1006, 1134
HpySE526I	ACGT	2 cut(s)	740, 1218
Hsp92II	CATG	9 cut(s)	470, 493, 500, 529, 563, 600, 785, 840, 852
Kzo9I	GATC	2 cut(s)	88, 583
LmnI	GCTCC	2 cut(s)	58, 1241
Lsp1109I	GCAGC	1 cut(s)	415
MaeI	CTAG	3 cut(s)	242, 417, 1341
MaeII	ACGT	2 cut(s)	740, 1218
MaeIII	GTNAC	4 cut(s)	302, 412, 599, 605
MalI	GATC	2 cut(s)	90, 585
MboI	GATC	2 cut(s)	88, 583
MboII	GAAGA	7 cut(s)	151, 165, 510, 884, 1025, 1212, 1364
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	3 cut(s)	547, 639, 728
MluCI	AATT	6 cut(s)	404, 729, 746, 1041, 1186, 1360
MlyI	GAGTC	4 cut(s)	68, 263, 338, 996
MmeI	TCCRAC	1 cut(s)	250
MseI	TTAA	3 cut(s)	254, 1359, 1363
MslI	CAYNNNNRTG	1 cut(s)	1232
MspA1I	CMGCKG	2 cut(s)	569, 589
MspI	CCGG	2 cut(s)	581, 722
MspR9I	CCNGG	2 cut(s)	541, 723
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	1042
MvaI	CCWGG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	437, 586, 1037
NciI	CCSGG	1 cut(s)	723
NcoI	CCATGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	551
NdeII	GATC	2 cut(s)	88, 583
NlaIII	CATG	9 cut(s)	470, 493, 500, 529, 563, 600, 785, 840, 852
NlaIV	GGNNCC	4 cut(s)	250, 263, 484, 627
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	302, 412, 605
NspI	RCATGY	3 cut(s)	493, 785, 840
PacI	TTAATTAA	1 cut(s)	1363
PaeI	GCATGC	1 cut(s)	493
PciI	ACATGT	2 cut(s)	781, 836
PctI	GAATGC	1 cut(s)	1042
PfeI	GAWTC	3 cut(s)	800, 806, 1307
PkrI	GCNGC	1 cut(s)	430
PleI	GAGTC	4 cut(s)	68, 263, 337, 996
PpsI	GAGTC	4 cut(s)	68, 263, 337, 996
PpuMI	RGGWCCY	1 cut(s)	625
PscI	ACATGT	2 cut(s)	781, 836
Psp5II	RGGWCCY	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	539
PspN4I	GGNNCC	4 cut(s)	250, 263, 484, 627
PspPI	GGNCC	2 cut(s)	261, 625
PspPPI	RGGWCCY	1 cut(s)	625
PstI	CTGCAG	1 cut(s)	796
PvuII	CAGCTG	2 cut(s)	569, 589
RsaI	GTAC	2 cut(s)	386, 739
RsaNI	GTAC	2 cut(s)	385, 738
RseI	CAYNNNNRTG	1 cut(s)	1232
SaqAI	TTAA	3 cut(s)	254, 1359, 1363
SatI	GCNGC	1 cut(s)	429
Sau3AI	GATC	2 cut(s)	88, 583
Sau96I	GGNCC	2 cut(s)	261, 625
SchI	GAGTC	4 cut(s)	68, 263, 338, 996
ScrFI	CCNGG	2 cut(s)	541, 723
SduI	GDGCHC	3 cut(s)	547, 639, 728
SfcI	CTRYAG	2 cut(s)	792, 916
SinI	GGWCC	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	1232
SmlI	CTYRAG	1 cut(s)	753
SmoI	CTYRAG	1 cut(s)	753
SpeI	ACTAGT	1 cut(s)	416
SphI	GCATGC	1 cut(s)	493
Sse9I	AATT	6 cut(s)	404, 729, 746, 1041, 1186, 1360
SsiI	CCGC	2 cut(s)	56, 431
SspI	AATATT	1 cut(s)	716
SspMI	CTAG	3 cut(s)	242, 417, 1341
StyD4I	CCNGG	2 cut(s)	539, 721
StyI	CCWWGG	1 cut(s)	466
TaaI	ACNGT	5 cut(s)	310, 454, 605, 699, 917
TaiI	ACGT	2 cut(s)	743, 1221
TaqI	TCGA	3 cut(s)	639, 653, 733
TasI	AATT	6 cut(s)	404, 729, 746, 1041, 1186, 1360
TfiI	GAWTC	3 cut(s)	800, 806, 1307
Tru1I	TTAA	3 cut(s)	254, 1359, 1363
Tru9I	TTAA	3 cut(s)	254, 1359, 1363
TscAI	CASTG	9 cut(s)	30, 131, 184, 417, 447, 457, 610, 801, 1126
TseFI	GTSAC	3 cut(s)	302, 412, 605
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	3 cut(s)	302, 412, 605
TspDTI	ATGAA	2 cut(s)	180, 378
TspRI	CASTG	9 cut(s)	30, 131, 184, 417, 447, 457, 610, 801, 1126
VpaK11BI	GGWCC	1 cut(s)	625
XapI	RAATTY	2 cut(s)	746, 1186
XceI	RCATGY	3 cut(s)	493, 785, 840
XspI	CTAG	3 cut(s)	242, 417, 1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.