Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

23330739 .. 23333221

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTCGTTCTTCAGAACGAAGAGAAGCTCTTCCAAGCCAGTTACCCAAAACCCGTCCATGGCATTCTCGGAAAGTACTCTTTGCTCACCGTCTCCGGTGACCTTCACCGGAAGCTAAGAAACATTGGCGTCAGCTTCATCGCCTCTTCCAAGTCCTCGCCTCATTTTCTTCACTGGATCGAGAAGCTCTCGATCTCGATGATCGACTCGTGGAGTGGCCGAAATCAAGTCTCCTTCTTCAAAGAAGCTAAAGCTTTTACACTTCGTCTTATGGTGAAGCACCTCTTGAGTGTTAACCCCGAGGAGGCACTAGCTTCGAGAATATTAGAAGACTTCCAAACGTACATGCGAGGCTTCGTTTCTCTGCCGATAAATCTCCCCGGAACCGCTTATGCCAAGGCTGTTAAGGCTAGAGCGAGGCTTTCTTCGATTGTCAAGGAGGTTATGGAAGGAAGGCAAAGACGGAGAATCGGAGAGCTTGCAGAATTAGGAGAAGGAGAAGTGGACTTTTTAGACGTGATACTGTCGAAACAAAGCCTAAACAACGATGAAATAGTAAGCATTGTGTTGGACATAATGCCCAACACAATGCTGGGAGGGTACGAGACCACCTCAACGCTAATGGCCTTGATTGTCTACTTTCTTCATCATTCGCCAATTGCTTTTGCCAAATTAAAGGAAGAACACCAAGCTGTAAGGGAAAACAAAGAGGATGAGAGTGCTCCCTTGGACTGGGAAGATTACAAGAAAATGGAATACTCTTACAATGTTATATGTGATGCCATGAGATGTGGCAATGTAGTTAAATTTGTGCACAGAAAAGCTCTTCAAGATGTGAAATTTAAAGAGCTGGTCATACCGTCAGGATGGAAGGTTCTTCCGATCTTCACCGCATCACATATGGATCCAGATATTCACGATAATCCGGATCATTACAAAGAAATGAGCAGAAAAGTGACACCGTTTGGTGGAGGAGCAAGGCTTTGTCCAGGAGCTGAGCTCGCTAAAGTAGTCATTTCCTTTTTCCTTCATCATCTAGTCCTTAAATATAGGTGGAAAACAAAATCAGATGAGTGCCCTCTTGCTTACCCCTATGTCGAATTCCGAAGAGGTTTACTGATAGAGATTGAACCTGATGCGGCTGGAAGTGACTTGATCTACAAGGAGATGAAATTGAGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

394

Amino Acids

44.91

Weight (kDa)

8.17

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	3 - 360	2.2e-39	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	636
AccIII	TCCGGA	1 cut(s)	925
AciI	CCGC	3 cut(s)	387, 891, 1139
AclWI	GGATC	4 cut(s)	185, 899, 912, 936
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	3 cut(s)	806, 839, 1100
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	3 cut(s)	77, 344, 602
AfiI	CCNNNNNNNGG	4 cut(s)	59, 304, 732, 968
AgsI	TTSAA	3 cut(s)	241, 830, 1130
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	988
AloI	GAACNNNNNNTCC	2 cut(s)	858, 890
Alw21I	GWGCWC	3 cut(s)	724, 816, 1002
Alw26I	GTCTC	3 cut(s)	97, 235, 599
Alw44I	GTGCAC	1 cut(s)	812
AlwI	GGATC	4 cut(s)	185, 899, 912, 936
AlwNI	CAGNNNCTG	1 cut(s)	995
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	925
AoxI	GGCC	2 cut(s)	217, 624
ApaLI	GTGCAC	1 cut(s)	812
ApoI	RAATTY	3 cut(s)	806, 839, 1100
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	381
AsuHPI	GGTGA	5 cut(s)	79, 98, 110, 286, 880
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	2 cut(s)	816, 1079
BamHI	GGATCC	1 cut(s)	904
BanII	GRGCYC	1 cut(s)	1002
BauI	CACGAG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	3 cut(s)	724, 816, 1002
BccI	CCATC	1 cut(s)	861
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	3 cut(s)	97, 235, 599
BfaI	CTAG	3 cut(s)	311, 411, 1037
BisI	GCNGC	1 cut(s)	1140
BlpI	GCTNAGC	1 cut(s)	996
BlsI	GCNGC	1 cut(s)	1141
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	2 cut(s)	381, 990
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	385, 906
BmrFI	CCNGG	2 cut(s)	381, 990
BmrI	ACTGGG	1 cut(s)	742
BmsI	GCATC	3 cut(s)	769, 902, 1126
BmuI	ACTGGG	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	6 cut(s)	173, 205, 596, 628, 984, 1016
Bpu1102I	GCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	1 cut(s)	307
BpuMI	CCSGG	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	5 cut(s)	58, 300, 379, 396, 726
BsaWI	WCCGGW	3 cut(s)	95, 108, 925
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 304, 732, 968
Bse1I	ACTGG	3 cut(s)	39, 179, 737
Bse3DI	GCAATG	1 cut(s)	802
BseAI	TCCGGA	1 cut(s)	925
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	5 cut(s)	58, 300, 379, 396, 726
BseGI	GGATG	2 cut(s)	718, 872
BseLI	CCNNNNNNNGG	4 cut(s)	59, 304, 732, 968
BseMI	GCAATG	1 cut(s)	802
BseMII	CTCAG	1 cut(s)	987
BseNI	ACTGG	3 cut(s)	39, 179, 737
BseRI	GAGGAG	2 cut(s)	317, 987
BseSI	GKGCMC	2 cut(s)	816, 1079
BseYI	CCCAGC	1 cut(s)	592
BshFI	GGCC	2 cut(s)	219, 626
BsiHKAI	GWGCWC	3 cut(s)	724, 816, 1002
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	96, 109, 381, 926
BslI	CCNNNNNNNGG	4 cut(s)	59, 304, 732, 968
BsmAI	GTCTC	3 cut(s)	97, 235, 599
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	219, 626
Bso31I	GGTCTC	1 cut(s)	599
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	4 cut(s)	724, 816, 1002, 1079
Bsp13I	TCCGGA	1 cut(s)	925
Bsp143I	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
Bsp1720I	GCTNAGC	1 cut(s)	996
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	3 cut(s)	387, 891, 1139
BspANI	GGCC	2 cut(s)	219, 626
BspCNI	CTCAG	1 cut(s)	988
BspEI	TCCGGA	1 cut(s)	925
BspLI	GGNNCC	2 cut(s)	385, 906
BspPI	GGATC	4 cut(s)	185, 899, 912, 936
BspQI	GCTCTTC	2 cut(s)	35, 831
BspTNI	GGTCTC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	802
BsrI	ACTGG	3 cut(s)	39, 179, 737
BssECI	CCNNGG	5 cut(s)	58, 300, 379, 396, 726
BssMI	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	3 cut(s)	58, 396, 726
Bst2BI	CACGAG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	4 cut(s)	91, 525, 861, 963
Bst6I	CTCTTC	5 cut(s)	15, 35, 151, 831, 1102
BstACI	GRCGYC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	480, 1002
BstDEI	CTNAG	2 cut(s)	116, 996
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	718, 872
BstKTI	GATC	7 cut(s)	180, 195, 204, 885, 907, 931, 1158
BstMAI	GTCTC	3 cut(s)	97, 235, 599
BstMBI	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
BstMWI	GCNNNNNNNGC	2 cut(s)	407, 1001
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	349
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	2 cut(s)	379, 988
BstSLI	GKGCMC	2 cut(s)	816, 1079
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BsuRI	GGCC	2 cut(s)	219, 626
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	124
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	718, 872
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	480, 1002
CaiI	CAGNNNCTG	1 cut(s)	995
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	3 cut(s)	76, 343, 601
CviAII	CATG	3 cut(s)	59, 346, 784
CviQI	GTAC	3 cut(s)	76, 343, 601
DdeI	CTNAG	2 cut(s)	116, 996
DpnI	GATC	7 cut(s)	179, 194, 203, 884, 906, 930, 1157
DpnII	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
DraI	TTTAAA	1 cut(s)	844
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	5 cut(s)	15, 35, 151, 831, 1102
EarI	CTCTTC	5 cut(s)	15, 35, 151, 831, 1102
Ecl136II	GAGCTC	1 cut(s)	1000
Eco130I	CCWWGG	3 cut(s)	58, 396, 726
Eco24I	GRGCYC	1 cut(s)	1002
Eco31I	GGTCTC	1 cut(s)	599
Eco53kI	GAGCTC	1 cut(s)	1000
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	1000
EcoO65I	GGTNACC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	3 cut(s)	58, 396, 726
EcoT38I	GRGCYC	1 cut(s)	1002
ErhI	CCWWGG	3 cut(s)	58, 396, 726
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	3 cut(s)	62, 349, 787
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	58, 345, 783
FauNDI	CATATG	1 cut(s)	900
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	1 cut(s)	1140
FokI	GGATG	2 cut(s)	725, 879
FriOI	GRGCYC	1 cut(s)	1002
Fsp4HI	GCNGC	1 cut(s)	1140
FspBI	CTAG	3 cut(s)	311, 411, 1037
GluI	GCNGC	1 cut(s)	1140
GsaI	CCCAGC	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	219, 626
HapII	CCGG	4 cut(s)	96, 109, 381, 926
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	62, 349, 787
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	206, 468
HpaI	GTTAAC	1 cut(s)	295
HpaII	CCGG	4 cut(s)	96, 109, 381, 926
HphI	GGTGA	5 cut(s)	79, 98, 110, 286, 880
Hpy166II	GTNNAC	5 cut(s)	295, 505, 637, 814, 1115
Hpy188I	TCNGA	6 cut(s)	15, 71, 473, 882, 1069, 1106
Hpy8I	GTNNAC	5 cut(s)	295, 505, 637, 814, 1115
HpyAV	CCTTC	7 cut(s)	113, 244, 443, 447, 488, 865, 1037
HpyCH4III	ACNGT	4 cut(s)	91, 525, 861, 963
HpyCH4IV	ACGT	2 cut(s)	341, 516
HpyCH4V	TGCA	2 cut(s)	482, 814
HpyF10VI	GCNNNNNNNGC	2 cut(s)	407, 1001
HpyF3I	CTNAG	2 cut(s)	116, 996
HpySE526I	ACGT	2 cut(s)	341, 516
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	62, 349, 787
Kpn2I	TCCGGA	1 cut(s)	925
KspAI	GTTAAC	1 cut(s)	295
Kzo9I	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
LguI	GCTCTTC	2 cut(s)	35, 831
LmnI	GCTCC	3 cut(s)	727, 974, 992
LweI	GCATC	3 cut(s)	769, 902, 1126
MaeI	CTAG	3 cut(s)	311, 411, 1037
MaeII	ACGT	2 cut(s)	341, 516
MaeIII	GTNAC	4 cut(s)	41, 98, 955, 1148
MalI	GATC	7 cut(s)	179, 194, 203, 884, 906, 930, 1157
MboI	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	4 cut(s)	724, 816, 1002, 1079
MluCI	AATT	7 cut(s)	485, 657, 671, 806, 839, 1100, 1172
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	549
MroI	TCCGGA	1 cut(s)	925
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	7 cut(s)	294, 405, 674, 804, 843, 1044, 1183
MspI	CCGG	4 cut(s)	96, 109, 381, 926
MspR9I	CCNGG	2 cut(s)	381, 990
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	2 cut(s)	407, 1001
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	58
NdeI	CATATG	1 cut(s)	900
NdeII	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
NlaIII	CATG	3 cut(s)	62, 349, 787
NlaIV	GGNNCC	2 cut(s)	385, 906
NmuCI	GTSAC	3 cut(s)	98, 955, 1148
NspI	RCATGY	1 cut(s)	349
PciSI	GCTCTTC	2 cut(s)	35, 831
PctI	GAATGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	468
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	1 cut(s)	1141
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	1002
Psp6I	CCWGG	1 cut(s)	988
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	592
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	2 cut(s)	385, 906
PstNI	CAGNNNCTG	1 cut(s)	995
PsuI	RGATCY	1 cut(s)	904
RsaI	GTAC	3 cut(s)	77, 344, 602
RsaNI	GTAC	3 cut(s)	76, 343, 601
SacI	GAGCTC	1 cut(s)	1002
SapI	GCTCTTC	2 cut(s)	35, 831
SaqAI	TTAA	7 cut(s)	294, 405, 674, 804, 843, 1044, 1183
SatI	GCNGC	1 cut(s)	1140
Sau3AI	GATC	7 cut(s)	177, 192, 201, 882, 904, 928, 1155
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	381, 990
SduI	GDGCHC	4 cut(s)	724, 816, 1002, 1079
SfaNI	GCATC	3 cut(s)	769, 902, 1126
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
Sse9I	AATT	7 cut(s)	485, 657, 671, 806, 839, 1100, 1172
SsiI	CCGC	3 cut(s)	387, 891, 1139
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	3 cut(s)	311, 411, 1037
SstI	GAGCTC	1 cut(s)	1002
StyD4I	CCNGG	2 cut(s)	379, 988
StyI	CCWWGG	3 cut(s)	58, 396, 726
TaaI	ACNGT	4 cut(s)	91, 525, 861, 963
TaiI	ACGT	2 cut(s)	344, 519
TaqI	TCGA	8 cut(s)	180, 191, 197, 204, 317, 428, 527, 1098
TasI	AATT	7 cut(s)	485, 657, 671, 806, 839, 1100, 1172
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	1142
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	7 cut(s)	294, 405, 674, 804, 843, 1044, 1183
Tru9I	TTAA	7 cut(s)	294, 405, 674, 804, 843, 1044, 1183
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	3 cut(s)	98, 955, 1148
Tsp45I	GTSAC	3 cut(s)	98, 955, 1148
TspDTI	ATGAA	5 cut(s)	127, 564, 635, 1019, 1184
TspGWI	ACGGA	1 cut(s)	478
TspRI	CASTG	1 cut(s)	179
VneI	GTGCAC	1 cut(s)	812
XapI	RAATTY	3 cut(s)	806, 839, 1100
XceI	RCATGY	1 cut(s)	349
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	3 cut(s)	311, 411, 1037
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.