Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003439.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

42811 .. 43115

Gene Structure 305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003439.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

atgtgcaagagattcactccctttggtggagggtctagatgctgtccaggatctgaacttgggaggcttgaggttgcattttttctccaccaccttgtacaaaatttcaggtggaggactgaggatgatgagcaacctatagcttatccgtacgtagaattcaaaagagggttgccactttacttggaggattgccccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

67

Amino Acids

7.84

Weight (kDa)

6.05

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	103, 158
AfaI	GTAC	2 cut(s)	99, 152
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
AlwI	GGATC	1 cut(s)	58
AlwNI	CAGNNNCTG	1 cut(s)	53
ApoI	RAATTY	2 cut(s)	103, 158
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BmsI	GCATC	1 cut(s)	29
BplI	GAGNNNNNCTC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	111
BsiWI	CGTACG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	97
BssMI	GATC	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	97
BstBAI	YACGTR	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	120
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSFI	CTRYAG	1 cut(s)	138
BstSNI	TACGTA	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	98, 151
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviJI	RGCY	2 cut(s)	67, 143
CviKI_1	RGCY	2 cut(s)	67, 143
CviQI	GTAC	2 cut(s)	98, 151
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	1 cut(s)	52
DpnII	GATC	1 cut(s)	50
Eco105I	TACGTA	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	46
FaiI	YATR	1 cut(s)	140
FokI	GGATG	1 cut(s)	137
FspBI	CTAG	1 cut(s)	36
HinfI	GANTC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	6, 77
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	50
LpnPI	CCDG	3 cut(s)	33, 60, 94
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	153
MalI	GATC	1 cut(s)	52
MboI	GATC	1 cut(s)	50
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	2 cut(s)	103, 158
MnlI	CCTC	7 cut(s)	23, 57, 64, 108, 115, 161, 181
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
NdeII	GATC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	12
Pfl23II	CGTACG	1 cut(s)	150
PfoI	TCCNGGA	1 cut(s)	46
Ppu21I	YACGTR	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspLI	CGTACG	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	99, 152
RsaNI	GTAC	2 cut(s)	98, 151
Sau3AI	GATC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	6 cut(s)	75, 96, 113, 139, 145, 156
SfaNI	GCATC	1 cut(s)	29
SfcI	CTRYAG	1 cut(s)	138
SgeI	CNNG	9 cut(s)	19, 48, 59, 60, 71, 80, 107, 121, 196
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SnaBI	TACGTA	1 cut(s)	154
Sse9I	AATT	2 cut(s)	103, 158
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	46
TaiI	ACGT	1 cut(s)	156
TasI	AATT	2 cut(s)	103, 158
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	12
TspGWI	ACGGA	1 cut(s)	138
XapI	RAATTY	2 cut(s)	103, 158
XbaI	TCTAGA	1 cut(s)	35
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.