Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

57355743 .. 57356819

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGATTAATTTATCAACAAAAGATGTATTCGATTTCTACTCCACTTTTCTCGGAGCTCTAGGGTTGCAAAACAGAGAGTTGGTTTTCTTCAGTTTTACGTGGTGGCTCTCGTCCGGCGGCGCCCTAGCGTCGGCGTGGGCCTTTGGCTCCACCGGTGTGGGGGGTTTGCTGCTGGACAGGTTTTGGGAGGTTCTATGGTGGTTGAGGCGCGGCGCTGGTGCAATATGGCTACTTGTTCTCGATGGCGGCGATGACAGTTCTACGATTTCATGCCTGACAGGAAAACGGGATCGGCGGCCTCCTTCATCGGATCTGGACGTTGACGGTTGTGGGTGGAGGTATGCGGCTGTGCTTATGGGTTCTTGGGGGCGGTTTGACGGCGAAGGGCTTGATTCATCAAAGATGGTGTCTTGCGGCATACCTGGGATTGGTTTTGCAGATGGGCAAGGAAGCATGCTCCAGGATGGGTTGCTATGGCGGTGGAATATGCAGGTTTGTTTGGTGTCCAACAGGTGGTCCAGATCTTTTGGAGGGGAAGATGGTGCCGTCATCTGTTCGGCGATGAGGTTTATCAACTATCCCGTGGCAGTTGTTTGGGACAAGTATGTTGAGTATTGCAGCACTTTTTTGGTTCGTTTTAGGTTTTTCTTTACTTTGGTAGTTTTTTGGTTAGGTTCAATAAGTCCCTACTCCTTCGAGCTAGGGTTTGGGAGTTGTTTTAGGTTTGGCGTGCCATTATTGTGGCGTTACTCCGAGGAATTATGGGTTTTAATTTCGGTGCTTTCTGGTTGTCAACATGAGGGTGGATTGCCTTTGCACGTGGTCTGGCGGTACTTGGACACGGTGTTGAAGAGGGTAAATTGGCTCTGTCTAATGTTGGTGGCGAGGTTGTATCGGTACTCTCGGGAAGTAGCTCGTGGTTTCGGGCGTAAAATTTGGTTAGGGGTTGGGCTCATTTGGCTCATGGATGTTGCTATTAGCGACGGACCCATAACTATGGATCTTTGTAGGAATGTGTGTCGTGGTGTAGTACCACAACCGGTCATTCCAATGCGTTGTAATCTTTTCGGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

358

Amino Acids

40.41

Weight (kDa)

8.24

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	2 cut(s)	119, 542
AccB7I	CCANNNNNTGG	1 cut(s)	513
AccII	CGCG	1 cut(s)	210
AciI	CCGC	9 cut(s)	117, 210, 246, 295, 344, 370, 414, 478, 829
AclWI	GGATC	3 cut(s)	297, 318, 1008
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	1 cut(s)	73
AcvI	CACGTG	1 cut(s)	820
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	3 cut(s)	833, 899, 1032
AfiI	CCNNNNNNNGG	4 cut(s)	130, 159, 428, 513
AgeI	ACCGGT	2 cut(s)	152, 1039
AgsI	TTSAA	2 cut(s)	678, 850
AjnI	CCWGG	2 cut(s)	421, 459
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	3 cut(s)	56, 700, 914
AluI	AGCT	3 cut(s)	56, 700, 914
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	3 cut(s)	297, 318, 1008
Ama87I	CYCGRG	1 cut(s)	903
AoxI	GGCC	2 cut(s)	138, 296
ApeKI	GCWGC	2 cut(s)	169, 618
ApoI	RAATTY	1 cut(s)	933
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AseI	ATTAAT	1 cut(s)	6
AsiGI	ACCGGT	2 cut(s)	152, 1039
AspLEI	GCGC	3 cut(s)	122, 210, 215
AspS9I	GGNCC	3 cut(s)	138, 516, 986
AvaI	CYCGRG	1 cut(s)	903
AvaII	GGWCC	2 cut(s)	516, 986
BanI	GGYRCC	2 cut(s)	119, 542
BanII	GRGCYC	2 cut(s)	58, 954
BauI	CACGAG	1 cut(s)	915
BbrPI	CACGTG	1 cut(s)	820
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	156, 630
BccI	CCATC	5 cut(s)	236, 397, 434, 458, 533
BceAI	ACGGC	2 cut(s)	394, 530
BciT130I	CCWGG	2 cut(s)	423, 461
BfaI	CTAG	3 cut(s)	59, 125, 701
BfoI	RGCGCY	2 cut(s)	123, 216
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	521
BisI	GCNGC	8 cut(s)	118, 170, 211, 247, 296, 345, 415, 619
BlsI	GCNGC	8 cut(s)	119, 171, 212, 248, 297, 346, 416, 620
Bme1390I	CCNGG	2 cut(s)	423, 461
Bme18I	GGWCC	2 cut(s)	516, 986
BmeT110I	CYCGRG	1 cut(s)	903
BmgT120I	GGNCC	3 cut(s)	138, 516, 986
BmiI	GGNNCC	4 cut(s)	121, 148, 544, 988
BmrFI	CCNGG	2 cut(s)	423, 461
BpmI	CTGGAG	1 cut(s)	443
BsaAI	YACGTR	2 cut(s)	99, 820
BsaHI	GRCGYC	1 cut(s)	120
BsaJI	CCNNGG	3 cut(s)	422, 582, 753
BsaWI	WCCGGW	2 cut(s)	152, 1039
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 159, 428, 513
Bse118I	RCCGGY	2 cut(s)	152, 1039
BseBI	CCWGG	2 cut(s)	423, 461
BseDI	CCNNGG	3 cut(s)	422, 582, 753
BseGI	GGATG	2 cut(s)	469, 973
BseLI	CCNNNNNNNGG	4 cut(s)	130, 159, 428, 513
BseXI	GCAGC	2 cut(s)	156, 630
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	140, 298
BshNI	GGYRCC	2 cut(s)	119, 542
BshTI	ACCGGT	2 cut(s)	152, 1039
BsiHKAI	GWGCWC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	903
BsiSI	CCGG	3 cut(s)	114, 153, 1040
BslFI	GGGAC	2 cut(s)	611, 669
BslI	CCNNNNNNNGG	4 cut(s)	130, 159, 428, 513
BsmFI	GGGAC	2 cut(s)	611, 669
BsnI	GGCC	2 cut(s)	140, 298
BsoBI	CYCGRG	1 cut(s)	903
Bsp1286I	GDGCHC	2 cut(s)	58, 954
Bsp143I	GATC	4 cut(s)	289, 310, 521, 1000
BspACI	CCGC	9 cut(s)	117, 210, 246, 295, 344, 370, 414, 478, 829
BspANI	GGCC	2 cut(s)	140, 298
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	121, 148, 544, 988
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	3 cut(s)	297, 318, 1008
BspT107I	GGYRCC	2 cut(s)	119, 542
BsrFI	RCCGGY	2 cut(s)	152, 1039
BssAI	RCCGGY	2 cut(s)	152, 1039
BssECI	CCNNGG	3 cut(s)	422, 582, 753
BssMI	GATC	4 cut(s)	289, 310, 521, 1000
BssNI	GRCGYC	1 cut(s)	120
BssSI	CACGAG	1 cut(s)	915
Bst2BI	CACGAG	1 cut(s)	915
Bst2UI	CCWGG	2 cut(s)	423, 461
Bst4CI	ACNGT	3 cut(s)	257, 326, 844
Bst6I	CTCTTC	1 cut(s)	845
BstACI	GRCGYC	1 cut(s)	120
BstBAI	YACGTR	2 cut(s)	99, 820
BstC8I	GCNNGC	2 cut(s)	455, 731
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	469, 973
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	2 cut(s)	123, 216
BstHHI	GCGC	3 cut(s)	122, 210, 215
BstKTI	GATC	4 cut(s)	292, 313, 524, 1003
BstMBI	GATC	4 cut(s)	289, 310, 521, 1000
BstMWI	GCNNNNNNNGC	1 cut(s)	958
BstNI	CCWGG	2 cut(s)	423, 461
BstNSI	RCATGY	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	421, 459
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	156, 630
BstX2I	RGATCY	3 cut(s)	310, 521, 1000
BstXI	CCANNNNNNTGG	3 cut(s)	157, 741, 997
BstYI	RGATCY	3 cut(s)	310, 521, 1000
BsuRI	GGCC	2 cut(s)	140, 298
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	2 cut(s)	264, 575
BtsCI	GGATG	2 cut(s)	469, 973
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	455, 731
CfoI	GCGC	3 cut(s)	122, 210, 215
Cfr10I	RCCGGY	2 cut(s)	152, 1039
Cfr13I	GGNCC	3 cut(s)	138, 516, 986
CseI	GACGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	832, 898, 1031
CspAI	ACCGGT	2 cut(s)	152, 1039
CviAII	CATG	4 cut(s)	270, 454, 797, 964
CviQI	GTAC	3 cut(s)	832, 898, 1031
DinI	GGCGCC	1 cut(s)	121
DpnI	GATC	4 cut(s)	291, 312, 523, 1002
DpnII	GATC	4 cut(s)	289, 310, 521, 1000
Eam1104I	CTCTTC	1 cut(s)	845
EarI	CTCTTC	1 cut(s)	845
Ecl136II	GAGCTC	1 cut(s)	56
Eco24I	GRGCYC	2 cut(s)	58, 954
Eco47I	GGWCC	2 cut(s)	516, 986
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	73
Eco72I	CACGTG	1 cut(s)	820
Eco88I	CYCGRG	1 cut(s)	903
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	421, 459
EcoT38I	GRGCYC	2 cut(s)	58, 954
EgeI	GGCGCC	1 cut(s)	121
EheI	GGCGCC	1 cut(s)	121
FaeI	CATG	4 cut(s)	273, 457, 800, 967
FaqI	GGGAC	2 cut(s)	611, 669
FatI	CATG	4 cut(s)	269, 453, 796, 963
Fnu4HI	GCNGC	8 cut(s)	118, 170, 211, 247, 296, 345, 415, 619
FokI	GGATG	2 cut(s)	476, 980
FriOI	GRGCYC	2 cut(s)	58, 954
Fsp4HI	GCNGC	8 cut(s)	118, 170, 211, 247, 296, 345, 415, 619
FspBI	CTAG	3 cut(s)	59, 125, 701
GlaI	GCGC	3 cut(s)	121, 209, 214
GluI	GCNGC	8 cut(s)	118, 170, 211, 247, 296, 345, 415, 619
GsuI	CTGGAG	1 cut(s)	443
HaeII	RGCGCY	2 cut(s)	123, 216
HaeIII	GGCC	2 cut(s)	140, 298
HapII	CCGG	3 cut(s)	114, 153, 1040
HgaI	GACGC	1 cut(s)	117
HhaI	GCGC	3 cut(s)	122, 210, 215
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	4 cut(s)	273, 457, 800, 967
Hin6I	GCGC	3 cut(s)	120, 208, 213
HinP1I	GCGC	3 cut(s)	120, 208, 213
HincII	GTYRAC	2 cut(s)	322, 794
HindII	GTYRAC	2 cut(s)	322, 794
HinfI	GANTC	1 cut(s)	392
HpaII	CCGG	3 cut(s)	114, 153, 1040
Hpy166II	GTNNAC	2 cut(s)	322, 794
Hpy188I	TCNGA	3 cut(s)	53, 310, 754
Hpy188III	TCNNGA	4 cut(s)	239, 314, 519, 905
Hpy8I	GTNNAC	2 cut(s)	322, 794
Hpy99I	CGWCG	2 cut(s)	133, 986
HpyAV	CCTTC	3 cut(s)	312, 377, 703
HpyCH4III	ACNGT	3 cut(s)	257, 326, 844
HpyCH4IV	ACGT	3 cut(s)	98, 318, 819
HpyCH4V	TGCA	6 cut(s)	67, 221, 437, 490, 618, 817
HpyF10VI	GCNNNNNNNGC	1 cut(s)	958
HpySE526I	ACGT	3 cut(s)	98, 318, 819
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	4 cut(s)	273, 457, 800, 967
HspAI	GCGC	3 cut(s)	120, 208, 213
KasI	GGCGCC	1 cut(s)	119
Kzo9I	GATC	4 cut(s)	289, 310, 521, 1000
LmnI	GCTCC	3 cut(s)	53, 152, 462
Lsp1109I	GCAGC	2 cut(s)	156, 630
MaeI	CTAG	3 cut(s)	59, 125, 701
MaeII	ACGT	3 cut(s)	98, 318, 819
MaeIII	GTNAC	1 cut(s)	746
MalI	GATC	4 cut(s)	291, 312, 523, 1002
MboI	GATC	4 cut(s)	289, 310, 521, 1000
MboII	GAAGA	3 cut(s)	79, 548, 862
MflI	RGATCY	3 cut(s)	310, 521, 1000
MhlI	GDGCHC	2 cut(s)	58, 954
MluCI	AATT	5 cut(s)	7, 758, 771, 859, 933
Mly113I	GGCGCC	1 cut(s)	120
MmeI	TCCRAC	1 cut(s)	531
MseI	TTAA	3 cut(s)	6, 770, 1075
MslI	CAYNNNNRTG	5 cut(s)	155, 739, 801, 995, 1049
MspI	CCGG	3 cut(s)	114, 153, 1040
MspR9I	CCNGG	2 cut(s)	423, 461
MteI	GCGCNGCGC	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	423, 461
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	958
NarI	GGCGCC	1 cut(s)	120
NdeII	GATC	4 cut(s)	289, 310, 521, 1000
NlaIII	CATG	4 cut(s)	273, 457, 800, 967
NlaIV	GGNNCC	4 cut(s)	121, 148, 544, 988
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	457
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	513
PfoI	TCCNGGA	1 cut(s)	459
PinAI	ACCGGT	2 cut(s)	152, 1039
PkrI	GCNGC	8 cut(s)	119, 171, 212, 248, 297, 346, 416, 620
PluTI	GGCGCC	1 cut(s)	123
PmaCI	CACGTG	1 cut(s)	820
PmlI	CACGTG	1 cut(s)	820
Ppu21I	YACGTR	2 cut(s)	99, 820
PshBI	ATTAAT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	421, 459
PspCI	CACGTG	1 cut(s)	820
PspGI	CCWGG	2 cut(s)	421, 459
PspN4I	GGNNCC	4 cut(s)	121, 148, 544, 988
PspPI	GGNCC	3 cut(s)	138, 516, 986
PsuI	RGATCY	3 cut(s)	310, 521, 1000
RsaI	GTAC	3 cut(s)	833, 899, 1032
RsaNI	GTAC	3 cut(s)	832, 898, 1031
RseI	CAYNNNNRTG	5 cut(s)	155, 739, 801, 995, 1049
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	6, 770, 1075
SatI	GCNGC	8 cut(s)	118, 170, 211, 247, 296, 345, 415, 619
Sau3AI	GATC	4 cut(s)	289, 310, 521, 1000
Sau96I	GGNCC	3 cut(s)	138, 516, 986
ScrFI	CCNGG	2 cut(s)	423, 461
SduI	GDGCHC	2 cut(s)	58, 954
SfoI	GGCGCC	1 cut(s)	121
SgrAI	CRCCGGYG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	516, 986
SmiMI	CAYNNNNRTG	5 cut(s)	155, 739, 801, 995, 1049
SphI	GCATGC	1 cut(s)	457
Sse9I	AATT	5 cut(s)	7, 758, 771, 859, 933
SsiI	CCGC	9 cut(s)	117, 210, 246, 295, 344, 370, 414, 478, 829
SspDI	GGCGCC	1 cut(s)	119
SspMI	CTAG	3 cut(s)	59, 125, 701
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	421, 459
TaaI	ACNGT	3 cut(s)	257, 326, 844
TaiI	ACGT	3 cut(s)	101, 321, 822
TaqI	TCGA	3 cut(s)	30, 240, 696
TasI	AATT	5 cut(s)	7, 758, 771, 859, 933
TauI	GCSGC	6 cut(s)	120, 213, 249, 298, 347, 417
TfiI	GAWTC	1 cut(s)	392
Tru1I	TTAA	3 cut(s)	6, 770, 1075
Tru9I	TTAA	3 cut(s)	6, 770, 1075
TseI	GCWGC	2 cut(s)	169, 618
TspDTI	ATGAA	3 cut(s)	258, 294, 384
TspGWI	ACGGA	1 cut(s)	999
Van91I	CCANNNNNTGG	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	516, 986
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	933
XceI	RCATGY	1 cut(s)	457
XspI	CTAG	3 cut(s)	59, 125, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.