Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Reverse (-)

57373315 .. 57375431

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCCAGTCTCGGATACCTTTACTCTCTGTTACTAACCCTCGTCAATTTCGACCCAGTAAGCTTCTCTCCTCACCGATCCACACCAGAAGCAAACCACAAGGCCCTGTTTGTGTTTGGTGATTCACTCTTTGATGCCGGAAACAACCAATACCTGAATGCTAGTGTGGAAGGATCAGCAGTTATCTGGCCATATGGGGAAACCTACTTCGACCATCCCACTGGTCGAATCTCCGATGGCCGCATTGTCCCGGATTTTATTGCTCAGTTTGCAAATCTTCCTTTGCCACCACCATACCTGGAACCTGGTGCTCATCAATTCAGTGATGGAACCAACTTTGCTTCTGCCGGAGCTGGTGTTCTGCCTGAAACTCAACCCGGAACGATAGATCTTCCAAGTCAGTTGAGCAATTTTAGGGACATGAAGAAGTCACTGCATCAGAAATTGGGTGACAAAGAGGTTAAGAAGTTGCTGGGGAGAGCTGTTTATTTCTTCAGCATTGGAGGAAATGACTACATTAACCTCTTTTCCCAACAGCCAAAAGCTCCTCATAGCTGCAAGAGGCAATATGTAGCAATGGTGATCAGGAACTTGACCATTGTGCTCAAAGAAATATATGATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGCACCTCTGGGCTGCATACCTGCGGTGAAATCAGGAAATCCTGATGTTGGTAGTAAATGTCTTGAAGAACCATTAAAGCTGGCCAGACTACATAATAGAGCTCTTTCTACTGCCCTCAAGAAGTTAGAGAACCACTTACCAGGATTCAAGTACTCAATATTTGATTACTATAATGCACTTGGGGACAGAGTTAACAATCCTTCAAAATATGGCTTCAAGAATGGGACATCTGCTTGTTGTGGTAGTGGGGCATTTAGAGGGTCTAATTGTGGGACAGAACCATACGAGTTATGCAGCAACCCCAGTGAGTATGTGTGGTTTGATGGTGGTCATACAACTGAAAGTGCCAACCTCCAACTAGCTGAGCTAATATGGAGAGGACCTTCAAATGTGACGGGGCCTTACACTATGAAACAGCTATTTGAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

362

Amino Acids

39.77

Weight (kDa)

7.61

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 342	5.9e-30	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccB1I	GGYRCC	1 cut(s)	655
AciI	CCGC	2 cut(s)	241, 677
AclWI	GGATC	2 cut(s)	72, 181
AcoI	YGGCCR	4 cut(s)	3, 188, 238, 735
AcuI	CTGAAG	1 cut(s)	478
AfaI	GTAC	1 cut(s)	806
AfiI	CCNNNNNNNGG	1 cut(s)	701
AgsI	TTSAA	6 cut(s)	719, 802, 858, 871, 1041, 1079
AjnI	CCWGG	3 cut(s)	297, 304, 793
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
Alw21I	GWGCWC	3 cut(s)	313, 606, 757
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	72, 181
AoxI	GGCC	6 cut(s)	3, 102, 188, 238, 735, 1052
ApeKI	GCWGC	3 cut(s)	555, 666, 948
AspS9I	GGNCC	3 cut(s)	103, 1034, 1052
AsuC2I	CCSGG	2 cut(s)	251, 378
AsuHPI	GGTGA	5 cut(s)	65, 131, 461, 592, 691
AvaII	GGWCC	1 cut(s)	1034
BalI	TGGCCA	3 cut(s)	5, 190, 737
BanI	GGYRCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	3 cut(s)	313, 606, 757
BbvI	GCAGC	3 cut(s)	542, 653, 960
BccI	CCATC	4 cut(s)	222, 230, 320, 971
BciT130I	CCWGG	3 cut(s)	299, 306, 795
BciVI	GTATCC	1 cut(s)	8
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	2 cut(s)	251, 378
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	162, 1013
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	8
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	4 cut(s)	241, 556, 667, 949
BlpI	GCTNAGC	1 cut(s)	1017
BlsI	GCNGC	4 cut(s)	242, 557, 668, 950
BmcAI	AGTACT	1 cut(s)	806
Bme1390I	CCNGG	5 cut(s)	251, 299, 306, 378, 795
Bme18I	GGWCC	1 cut(s)	1034
BmgT120I	GGNCC	3 cut(s)	103, 1034, 1052
BmiI	GGNNCC	4 cut(s)	303, 331, 657, 1053
BmrFI	CCNGG	5 cut(s)	251, 299, 306, 378, 795
BmrI	ACTGGG	2 cut(s)	50, 951
BmsI	GCATC	2 cut(s)	124, 445
BmuI	ACTGGG	2 cut(s)	50, 951
Bpu1102I	GCTNAGC	1 cut(s)	1017
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	2 cut(s)	251, 378
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse1I	ACTGG	4 cut(s)	6, 56, 226, 957
Bse3DI	GCAATG	1 cut(s)	582
BseBI	CCWGG	3 cut(s)	299, 306, 795
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	278, 1008
BseNI	ACTGG	4 cut(s)	6, 56, 226, 957
BseRI	GAGGAG	2 cut(s)	60, 537
BseXI	GCAGC	3 cut(s)	542, 653, 960
BseYI	CCCAGC	1 cut(s)	472
BshFI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BshNI	GGYRCC	1 cut(s)	655
BsiHKAI	GWGCWC	3 cut(s)	313, 606, 757
BsiSI	CCGG	4 cut(s)	138, 251, 348, 378
BslFI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
Bsp1286I	GDGCHC	3 cut(s)	313, 606, 757
Bsp143I	GATC	4 cut(s)	77, 173, 388, 582
Bsp1720I	GCTNAGC	1 cut(s)	1017
BspACI	CCGC	2 cut(s)	241, 677
BspANI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BspCNI	CTCAG	2 cut(s)	277, 1009
BspLI	GGNNCC	4 cut(s)	303, 331, 657, 1053
BspMI	ACCTGC	1 cut(s)	682
BspPI	GGATC	2 cut(s)	72, 181
BspT107I	GGYRCC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	582
BsrI	ACTGG	4 cut(s)	6, 56, 226, 957
BssMI	GATC	4 cut(s)	77, 173, 388, 582
Bst2UI	CCWGG	3 cut(s)	299, 306, 795
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	2 cut(s)	264, 1017
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	4 cut(s)	80, 176, 391, 585
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	77, 173, 388, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	3 cut(s)	299, 306, 795
BstSCI	CCNGG	5 cut(s)	249, 297, 304, 376, 793
BstV1I	GCAGC	3 cut(s)	542, 653, 960
BstX2I	RGATCY	1 cut(s)	388
BstXI	CCANNNNNNTGG	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	388
BsuI	GTATCC	1 cut(s)	8
BsuRI	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	4 cut(s)	219, 328, 431, 964
BveI	ACCTGC	1 cut(s)	682
Cac8I	GCNNGC	1 cut(s)	735
Cfr13I	GGNCC	3 cut(s)	103, 1034, 1052
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	2 cut(s)	264, 1017
DpnI	GATC	4 cut(s)	79, 175, 390, 584
DpnII	GATC	4 cut(s)	77, 173, 388, 582
EaeI	YGGCCR	4 cut(s)	3, 188, 238, 735
Ecl136II	GAGCTC	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	1034
Eco53kI	GAGCTC	1 cut(s)	755
Eco57I	CTGAAG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	755
EcoO109I	RGGNCCY	3 cut(s)	103, 1034, 1052
EcoRII	CCWGG	3 cut(s)	297, 304, 793
EcoT38I	GRGCYC	1 cut(s)	757
FaeI	CATG	1 cut(s)	424
FaqI	GGGAC	5 cut(s)	233, 431, 851, 892, 940
FatI	CATG	1 cut(s)	420
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	582
Fnu4HI	GCNGC	4 cut(s)	241, 556, 667, 949
FokI	GGATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	757
Fsp4HI	GCNGC	4 cut(s)	241, 556, 667, 949
FspBI	CTAG	2 cut(s)	162, 1013
GluI	GCNGC	4 cut(s)	241, 556, 667, 949
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	6 cut(s)	5, 104, 190, 240, 737, 1054
HapII	CCGG	4 cut(s)	138, 251, 348, 378
Hin1II	CATG	1 cut(s)	424
HincII	GTYRAC	1 cut(s)	847
HindII	GTYRAC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	3 cut(s)	122, 228, 798
HpaI	GTTAAC	1 cut(s)	847
HpaII	CCGG	4 cut(s)	138, 251, 348, 378
HphI	GGTGA	5 cut(s)	65, 131, 461, 592, 691
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	4 cut(s)	14, 235, 441, 648
Hpy188III	TCNNGA	7 cut(s)	586, 687, 695, 716, 772, 871, 1086
Hpy8I	GTNNAC	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	164, 624, 864, 1047
HpyCH4V	TGCA	7 cut(s)	272, 436, 558, 641, 669, 830, 948
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	264, 1017
Hsp92II	CATG	1 cut(s)	424
Ksp22I	TGATCA	1 cut(s)	582
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	77, 173, 388, 582
LmnI	GCTCC	2 cut(s)	350, 550
Lsp1109I	GCAGC	3 cut(s)	542, 653, 960
LweI	GCATC	2 cut(s)	124, 445
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	162, 1013
MaeIII	GTNAC	4 cut(s)	30, 429, 449, 1045
MalI	GATC	4 cut(s)	79, 175, 390, 584
MboI	GATC	4 cut(s)	77, 173, 388, 582
MboII	GAAGA	5 cut(s)	269, 383, 436, 484, 731
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	3 cut(s)	313, 606, 757
MlsI	TGGCCA	3 cut(s)	5, 190, 737
MluCI	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
MluNI	TGGCCA	3 cut(s)	5, 190, 737
MmeI	TCCRAC	1 cut(s)	1033
Mox20I	TGGCCA	3 cut(s)	5, 190, 737
MscI	TGGCCA	3 cut(s)	5, 190, 737
MseI	TTAA	4 cut(s)	462, 519, 728, 846
Msp20I	TGGCCA	3 cut(s)	5, 190, 737
MspI	CCGG	4 cut(s)	138, 251, 348, 378
MspR9I	CCNGG	5 cut(s)	251, 299, 306, 378, 795
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	3 cut(s)	299, 306, 795
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	251, 378
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	4 cut(s)	77, 173, 388, 582
NlaIII	CATG	1 cut(s)	424
NlaIV	GGNNCC	4 cut(s)	303, 331, 657, 1053
NmuCI	GTSAC	3 cut(s)	429, 449, 1045
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	3 cut(s)	122, 228, 798
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	242, 557, 668, 950
PpuMI	RGGWCCY	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	757
Psp5II	RGGWCCY	1 cut(s)	1034
Psp6I	CCWGG	3 cut(s)	297, 304, 793
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	3 cut(s)	297, 304, 793
PspN4I	GGNNCC	4 cut(s)	303, 331, 657, 1053
PspPI	GGNCC	3 cut(s)	103, 1034, 1052
PspPPI	RGGWCCY	1 cut(s)	1034
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
SacI	GAGCTC	1 cut(s)	757
SaqAI	TTAA	4 cut(s)	462, 519, 728, 846
SatI	GCNGC	4 cut(s)	241, 556, 667, 949
Sau3AI	GATC	4 cut(s)	77, 173, 388, 582
Sau96I	GGNCC	3 cut(s)	103, 1034, 1052
ScaI	AGTACT	1 cut(s)	806
ScrFI	CCNGG	5 cut(s)	251, 299, 306, 378, 795
SduI	GDGCHC	3 cut(s)	313, 606, 757
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	124, 445
SinI	GGWCC	1 cut(s)	1034
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
SsiI	CCGC	2 cut(s)	241, 677
SspI	AATATT	1 cut(s)	813
SspMI	CTAG	2 cut(s)	162, 1013
SstI	GAGCTC	1 cut(s)	757
StyD4I	CCNGG	5 cut(s)	249, 297, 304, 376, 793
TaqI	TCGA	3 cut(s)	51, 210, 226
TasI	AATT	6 cut(s)	46, 317, 409, 443, 636, 919
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	122, 228, 798
Tru1I	TTAA	4 cut(s)	462, 519, 728, 846
Tru9I	TTAA	4 cut(s)	462, 519, 728, 846
TscAI	CASTG	4 cut(s)	226, 328, 438, 964
TseFI	GTSAC	3 cut(s)	429, 449, 1045
TseI	GCWGC	3 cut(s)	555, 666, 948
Tsp45I	GTSAC	3 cut(s)	429, 449, 1045
TspDTI	ATGAA	2 cut(s)	437, 1079
TspRI	CASTG	4 cut(s)	226, 328, 438, 964
VpaK11BI	GGWCC	1 cut(s)	1034
XspI	CTAG	2 cut(s)	162, 1013
ZrmI	AGTACT	1 cut(s)	806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.