Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

21833596 .. 21835496

Gene Structure 1901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG196600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGGAAGGCGAAAACGGAGAATCGGAGAGCTTGCAGAATTAGGAGAAGGAGAAGTGGACTTTTTAGACGCGATACTGTCGAAACAAAGCCTAAACGACGATGAAATAGTAAGCATTGTGTTGGACATAATGCTGGGACGGTACGAGACCACCTCAACGCTAATGGCCTTGATTGTCTACTTTCTTCATCATTCGCCAATTGCTTTTGCCAAATCAAAGGAAGAACACCAAGCTATAAGGGAAAACAAAGAGGATGAGAGTGCTCCCTTGGACTGGAAAGATTACAAGAAAATGGAGTATTCTTACAATGTTATATGTGAAGCCATGAGATGTGGCAATGTAGTTAAATTTGTGCACAGAAAAGCTCTTCAAGATGTGAAATTTAAAGAGCTGGTCATACCGTCCGGATGGAAGGTTCTTCCGATCTTCACCGCATCACATATGGATCCAGATCTTCACGATAATCCGGCACAATTTGATCCTTCAAGATGGACTAGCGATCATTACAAAGAAATGAGCAGAAAAGTGACACCGTTTGGTGGAGGAGCAAGGCTTTGTCCAGGAGCTGAGCTCGCTAAAGTAGTCATTTCCTTTTTCCTTCATCATCTAGTCCTTACATATAGGTGCAAAACAAAATCAGATGAGTGCCCTCTTGCTTACCCCTATGTCGAATTCCGAAGAGGTTTACTGATAGAGATTGAACCTGCTGCGGCTGGAAGTGACTTGATCTACAAGGAGATGAAATTGAGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

252

Amino Acids

28.83

Weight (kDa)

6.16

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	17 - 218	1.4e-45	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	715
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	407
AciI	CCGC	2 cut(s)	435, 713
AclWI	GGATC	3 cut(s)	443, 456, 476
AcsI	RAATTY	3 cut(s)	350, 383, 674
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	276, 542
AgsI	TTSAA	3 cut(s)	374, 489, 704
AjnI	CCWGG	1 cut(s)	562
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	6 cut(s)	34, 236, 368, 394, 569, 574
AluI	AGCT	6 cut(s)	34, 236, 368, 394, 569, 574
Alw21I	GWGCWC	3 cut(s)	268, 360, 576
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	356
AlwI	GGATC	3 cut(s)	443, 456, 476
AlwNI	CAGNNNCTG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	407
AoxI	GGCC	1 cut(s)	168
ApaLI	GTGCAC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	710
ApoI	RAATTY	3 cut(s)	350, 383, 674
AsuHPI	GGTGA	1 cut(s)	424
BaeGI	GKGCMC	2 cut(s)	360, 653
BamHI	GGATCC	1 cut(s)	448
BanII	GRGCYC	2 cut(s)	576, 755
Bbv12I	GWGCWC	3 cut(s)	268, 360, 576
BbvI	GCAGC	1 cut(s)	697
BccI	CCATC	2 cut(s)	405, 486
BciT130I	CCWGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	498, 611
BfuAI	ACCTGC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	454
BisI	GCNGC	2 cut(s)	711, 714
BlpI	GCTNAGC	1 cut(s)	570
BlsI	GCNGC	2 cut(s)	712, 715
Bme1390I	CCNGG	1 cut(s)	564
BmiI	GGNNCC	1 cut(s)	450
BmrFI	CCNGG	1 cut(s)	564
BmsI	GCATC	1 cut(s)	446
BplI	GAGNNNNNCTC	4 cut(s)	140, 172, 558, 590
Bpu1102I	GCTNAGC	1 cut(s)	570
BsaBI	GATNNNNATC	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 542
Bse1I	ACTGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	453
BseAI	TCCGGA	1 cut(s)	407
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	2 cut(s)	262, 416
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	2 cut(s)	276, 542
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	561
BseSI	GKGCMC	2 cut(s)	360, 653
BseXI	GCAGC	1 cut(s)	697
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	170
BsiHKAI	GWGCWC	3 cut(s)	268, 360, 576
BsiSI	CCGG	2 cut(s)	408, 470
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	276, 542
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	5 cut(s)	268, 360, 576, 653, 755
Bsp13I	TCCGGA	1 cut(s)	407
Bsp143I	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
Bsp1720I	GCTNAGC	1 cut(s)	570
BspACI	CCGC	2 cut(s)	435, 713
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	562
BspEI	TCCGGA	1 cut(s)	407
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	715
BspPI	GGATC	3 cut(s)	443, 456, 476
BspQI	GCTCTTC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
BssT1I	CCWWGG	1 cut(s)	270
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	4 cut(s)	81, 144, 405, 537
Bst6I	CTCTTC	2 cut(s)	375, 676
BstC8I	GCNNGC	2 cut(s)	36, 576
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	262, 416
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	6 cut(s)	429, 451, 457, 484, 505, 732
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
BstMWI	GCNNNNNNNGC	1 cut(s)	575
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	1 cut(s)	562
BstSLI	GKGCMC	2 cut(s)	360, 653
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	448, 454
BstYI	RGATCY	2 cut(s)	448, 454
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	262, 416
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	2 cut(s)	36, 576
CaiI	CAGNNNCTG	1 cut(s)	569
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	6 cut(s)	428, 450, 456, 483, 504, 731
DpnII	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
DraI	TTTAAA	1 cut(s)	388
Eam1104I	CTCTTC	2 cut(s)	375, 676
EarI	CTCTTC	2 cut(s)	375, 676
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	576, 755
Eco31I	GGTCTC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	576, 755
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	331
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	1 cut(s)	327
FauNDI	CATATG	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	711, 714
FokI	GGATG	2 cut(s)	269, 423
FriOI	GRGCYC	2 cut(s)	576, 755
Fsp4HI	GCNGC	2 cut(s)	711, 714
FspBI	CTAG	2 cut(s)	498, 611
GluI	GCNGC	2 cut(s)	711, 714
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	2 cut(s)	408, 470
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	331
HinfI	GANTC	1 cut(s)	24
HpaII	CCGG	2 cut(s)	408, 470
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	4 cut(s)	61, 181, 358, 689
Hpy188I	TCNGA	4 cut(s)	29, 426, 643, 680
Hpy188III	TCNNGA	5 cut(s)	374, 408, 452, 461, 489
Hpy8I	GTNNAC	4 cut(s)	61, 181, 358, 689
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	3, 44, 409, 495, 611
HpyCH4III	ACNGT	4 cut(s)	81, 144, 405, 537
HpyCH4V	TGCA	3 cut(s)	38, 358, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	575
HpyF3I	CTNAG	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	407
Kzo9I	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	3 cut(s)	271, 548, 566
Lsp1109I	GCAGC	1 cut(s)	697
LweI	GCATC	1 cut(s)	446
MaeI	CTAG	2 cut(s)	498, 611
MaeIII	GTNAC	2 cut(s)	529, 722
MalI	GATC	6 cut(s)	428, 450, 456, 483, 504, 731
MboI	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
MboII	GAAGA	7 cut(s)	179, 236, 362, 413, 421, 449, 693
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	2 cut(s)	448, 454
MhlI	GDGCHC	5 cut(s)	268, 360, 576, 653, 755
MluCI	AATT	7 cut(s)	41, 201, 350, 383, 476, 674, 746
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	5 cut(s)	166, 247, 539, 663, 677
MroI	TCCGGA	1 cut(s)	407
MseI	TTAA	3 cut(s)	348, 387, 757
MslI	CAYNNNNRTG	1 cut(s)	625
MspI	CCGG	2 cut(s)	408, 470
MspR9I	CCNGG	1 cut(s)	564
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	575
NdeI	CATATG	1 cut(s)	444
NdeII	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	450
NmuCI	GTSAC	2 cut(s)	529, 722
PciSI	GCTCTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	24
PfoI	TCCNGGA	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	712, 715
Psp124BI	GAGCTC	1 cut(s)	576
Psp6I	CCWGG	1 cut(s)	562
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	450
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	448, 454
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	625
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	3 cut(s)	348, 387, 757
SatI	GCNGC	2 cut(s)	711, 714
Sau3AI	GATC	6 cut(s)	426, 448, 454, 481, 502, 729
ScrFI	CCNGG	1 cut(s)	564
SduI	GDGCHC	5 cut(s)	268, 360, 576, 653, 755
SfaNI	GCATC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	625
Sse9I	AATT	7 cut(s)	41, 201, 350, 383, 476, 674, 746
SsiI	CCGC	2 cut(s)	435, 713
SspMI	CTAG	2 cut(s)	498, 611
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	81, 144, 405, 537
TaqI	TCGA	2 cut(s)	83, 672
TasI	AATT	7 cut(s)	41, 201, 350, 383, 476, 674, 746
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	1 cut(s)	24
Tru1I	TTAA	3 cut(s)	348, 387, 757
Tru9I	TTAA	3 cut(s)	348, 387, 757
TseFI	GTSAC	2 cut(s)	529, 722
TseI	GCWGC	1 cut(s)	710
Tsp45I	GTSAC	2 cut(s)	529, 722
TspDTI	ATGAA	4 cut(s)	120, 179, 593, 758
TspGWI	ACGGA	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	356
XapI	RAATTY	3 cut(s)	350, 383, 674
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	498, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.