Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8071130.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8071130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

atggtgaagcacctcttgagtgttaaccccgaggaggcactagcttcgagaatattagaagacttccaaacgtacatgcgaggcttcgtttctctgccgataaatctccccggaaccgcttatgccaaggctgttaaggctagagcgaggctttcttccagtgtcaaggagattatggaaggaaggcgaaaacggcgaatcggagagcttgcagaattaggagaaggacaagtggactttttagacgcgatactgtcgaaacaaaggctaaacgacgatgaaatagtaagcattgtgttggacataatgctgggagggtacgagaccacctcaacactaatggccttgattgtctactttcttcatcattcgccaattgcttttgccaaattaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

132

Amino Acids

14.75

Weight (kDa)

8.01

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	248
AciI	CCGC	1 cut(s)	117
AfaI	GTAC	2 cut(s)	74, 320
AfiI	CCNNNNNNNGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	44, 208
AluI	AGCT	2 cut(s)	44, 208
Alw26I	GTCTC	1 cut(s)	317
Ama87I	CYCGRG	1 cut(s)	29
AoxI	GGCC	1 cut(s)	342
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	41, 141
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	111
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	30, 109, 126
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	30, 109, 126
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	344
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	29
BspACI	CCGC	1 cut(s)	117
BspANI	GGCC	1 cut(s)	344
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	115
BspTNI	GGTCTC	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	159
BssECI	CCNNGG	3 cut(s)	30, 109, 126
BssT1I	CCWWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 193
BstNSI	RCATGY	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	210
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	73, 319
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	8 cut(s)	44, 84, 131, 140, 151, 208, 268, 344
CviKI_1	RGCY	8 cut(s)	44, 84, 131, 140, 151, 208, 268, 344
CviQI	GTAC	2 cut(s)	73, 319
Eco130I	CCWWGG	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
FaeI	CATG	1 cut(s)	79
FaiI	YATR	4 cut(s)	77, 123, 176, 305
FalI	AAGNNNNNCTT	1 cut(s)	31
FatI	CATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	41, 141
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	111
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	198
HpaI	GTTAAC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	25, 235, 355
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	2 cut(s)	16, 48
Hpy8I	GTNNAC	3 cut(s)	25, 235, 355
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	173, 177, 218
HpyCH4III	ACNGT	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 193
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	1 cut(s)	79
KspAI	GTTAAC	1 cut(s)	25
LpnPI	CCDG	3 cut(s)	124, 172, 296
MaeI	CTAG	2 cut(s)	41, 141
MaeII	ACGT	1 cut(s)	71
MboII	GAAGA	3 cut(s)	71, 147, 353
MfeI	CAATTG	1 cut(s)	375
MluCI	AATT	3 cut(s)	215, 375, 389
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	7 cut(s)	23, 25, 28, 74, 141, 308, 340
MseI	TTAA	3 cut(s)	24, 135, 392
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	111
MunI	CAATTG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	137, 193
NciI	CCSGG	1 cut(s)	111
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	198
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	115
RsaI	GTAC	2 cut(s)	74, 320
RsaNI	GTAC	2 cut(s)	73, 319
SaqAI	TTAA	3 cut(s)	24, 135, 392
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	5 cut(s)	15, 46, 74, 210, 332
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	3 cut(s)	215, 375, 389
SsiI	CCGC	1 cut(s)	117
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	41, 141
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	255
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	2 cut(s)	47, 257
TasI	AATT	3 cut(s)	215, 375, 389
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	3 cut(s)	24, 135, 392
Tru9I	TTAA	3 cut(s)	24, 135, 392
TscAI	CASTG	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	294, 353
TspRI	CASTG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	41, 141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.