Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

21827609 .. 21830285

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG196500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTCGTTCTTCAGAACGAAGAGAAGCTCTTCCAAGCCAGTTACCCAAAACCCGTCCATGGCATTCTCGGGAAGTACTCTTTGCTCACCGTCTCCGGTGACCTTCACCGGAAGCTAAGGAACATTGGCGTCAGCTTCATCCCCTCTTCCAAGTCCTCGCCTCATTTTCTTCACTGGATCGAGAAGCTCTCGATCACGATGATGAACTCGTGGAGTGGCCGAAATCAAGTCTCCTTCTTCAAAGAAGCTAAAGCTGTCACCGCAAACGACGTCATCGCCGTTCCCCTTCTCCAGATCGCCGGCATCGTCCAGTTCACGCCTGTCGTGAAACGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

112

Amino Acids

12.62

Weight (kDa)

10.23

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	273
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	2 cut(s)	129, 270
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	6 cut(s)	28, 115, 135, 187, 248, 254
AluI	AGCT	6 cut(s)	28, 115, 135, 187, 248, 254
Alw26I	GTCTC	2 cut(s)	97, 235
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	29
AsuHPI	GGTGA	4 cut(s)	79, 98, 110, 250
AvaI	CYCGRG	1 cut(s)	68
BauI	CACGAG	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	263
BcoDI	GTCTC	2 cut(s)	97, 235
BmcAI	AGTACT	1 cut(s)	77
BmeT110I	CYCGRG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpmI	CTGGAG	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	116
BsaHI	GRCGYC	2 cut(s)	129, 270
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	2 cut(s)	95, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	3 cut(s)	39, 179, 310
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseNI	ACTGG	3 cut(s)	39, 179, 310
BshFI	GGCC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	96, 109, 300
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	97, 235
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	177, 192, 294
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	39, 179, 310
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	3 cut(s)	177, 192, 294
BssNI	GRCGYC	2 cut(s)	129, 270
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	15, 35, 151
BstACI	GRCGYC	2 cut(s)	129, 270
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	116
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	180, 195, 297
BstMAI	GTCTC	2 cut(s)	97, 235
BstMBI	GATC	3 cut(s)	177, 192, 294
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstPI	GGTNACC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	299
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	8 cut(s)	28, 38, 115, 135, 187, 219, 248, 254
CviKI_1	RGCY	8 cut(s)	28, 38, 115, 135, 187, 219, 248, 254
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	3 cut(s)	179, 194, 296
DpnII	GATC	3 cut(s)	177, 192, 294
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	15, 35, 151
EarI	CTCTTC	3 cut(s)	15, 35, 151
Eco130I	CCWWGG	1 cut(s)	58
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	1 cut(s)	62
FaiI	YATR	1 cut(s)	60
FatI	CATG	1 cut(s)	58
FokI	GGATG	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	96, 109, 300
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	2 cut(s)	129, 270
Hin1II	CATG	1 cut(s)	62
HpaII	CCGG	3 cut(s)	96, 109, 300
HphI	GGTGA	4 cut(s)	79, 98, 110, 250
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	6 cut(s)	70, 181, 190, 196, 292, 325
Hpy8I	GTNNAC	1 cut(s)	315
Hpy99I	CGWCG	1 cut(s)	272
HpyAV	CCTTC	3 cut(s)	113, 244, 296
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	129, 270
Hsp92II	CATG	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	177, 192, 294
LguI	GCTCTTC	1 cut(s)	35
LpnPI	CCDG	8 cut(s)	52, 109, 122, 160, 305, 313, 323, 333
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	41, 98, 256
MalI	GATC	3 cut(s)	179, 194, 296
MboI	GATC	3 cut(s)	177, 192, 294
MboII	GAAGA	5 cut(s)	22, 32, 138, 161, 229
MnlI	CCTC	4 cut(s)	154, 166, 171, 327
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	29
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	96, 109, 300
Mva1269I	GAATGC	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	260
NaeI	GCCGGC	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	3 cut(s)	177, 192, 294
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	1 cut(s)	62
NmuCI	GTSAC	2 cut(s)	98, 256
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	276, 303
PctI	GAATGC	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	29
PspEI	GGTNACC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	35
Sau3AI	GATC	3 cut(s)	177, 192, 294
ScaI	AGTACT	1 cut(s)	77
SetI	ASST	9 cut(s)	30, 105, 117, 137, 189, 250, 256, 273, 338
SfaNI	GCATC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	200
SsiI	CCGC	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	91
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	2 cut(s)	180, 191
TatI	WGTACW	1 cut(s)	75
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	2 cut(s)	98, 256
Tsp45I	GTSAC	2 cut(s)	98, 256
TspDTI	ATGAA	2 cut(s)	127, 218
TspRI	CASTG	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	29
ZraI	GACGTC	1 cut(s)	271
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.