MD09G1020700.v1.1

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
1260060 .. 1264595
4536 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1020700.v1.1.491

Sequence Viewer

Length: 1665 bp
ATGTATTTTCTTACAATATTGAATTGGAATGTAGGCCTGAGTGAAATGAAGGTACTGCTATATATATGTGTGTGTGTGTGTGTCTGTGAAAGAGGGCGGACTCACAAGTCAAACAATATGGTTGTGCTATCCCCAATTTCATTACTTTCTCTCTTGCTAGGAATAGGATTACTTATATTTTCTTACATTCTTCTCAAAATCTTTGCAGCACATGAAAATCCAGCTAATAACTTACCTCTTGGAAGCATGGGATGGCCCTTGCTTGGGGAGACCCTTGGCTTCCTTAAGCCTCATTCTTCGAACTCTGTCGGAACCTTCTTGCAACAACATTGCTCTAGATATGGGAAGGTTTTCAAATCGCATCTATTTGGTTCACCAACCATAGTTTCCTGTCACCTTGAGCTCAACATGTTCATTCTTCAGAACGAGGACAAACTATTCCAAGCCAGCTACCCCAAGTCCCTTCACGGGATTGTTGGAAAACATTCGTTACTCACCGTCTCCGGCAACCTTCATAGAAAGTTAAGAAGTATTGCTGTCAGCTTCATCTCTGTGTCCAAGTCGTCCCCTGATTTCCTTGACTTGGTTCAGAAGCTGTCAATCTCAATGATGGAGTCATGGAATGGCTGCAAACAAGTCTCCTTCTTCGAACAAGCTAAAGCTGTATGTGCGAGTAGCTACAAGAGAAAACATTATCAATGGTCTCTGACATCAGTGGCACACGATGAGTTTTCGCTCGGTCTTATGGTGAAGAACCTTCTGAGTGTTAAACCAGAAGAGCCTTTAGCCTCAAGGATTTTAGAAGACTTCGAAACCTTCATGACAGGCTTTGTTTCTCTCCCATTTAATATTCCTGGAACCGCTTATGCCAAGGCTGTCAAGGCTAGAGCAAGGCTTTCTTCCACTGTTAGAGAGATCATGGAAGAGAGAAGAAAAGGGAACATCAGTAGCAATGGAGGGCTGCTTAGAGAAAGAGAAGAAGAAGACTTCTTAAACGTTATACTGTCGAAACAAAACCTAACCGACGAAGAAATAGTGAGCATTGTATTGGATATCATGCTAGGAGGCTACGAGACTACCGCTACTCTTATGTCGTTGATTGTCTACTTTCTTGGCCATGCGCCACTTGCTTTCCACAAATTAAAGGAAGAACACCAAACGATAAGGGAAAATAAAAGGGATGGAGAGTTCTTAACTTGGGAAGATTACAAGAAAATGAACTTTACCAACTATGTTATATATGAAGCTATGAGATGTGGGAATGTAGTCAAATTTGTGCACAGGAAAGCTCTCGTAGACATCAAATTAGAAGATTGTGGCGCAGAATTCGTCATACCATCAGGATGGAAGGTTCTTCCAATCTTCACCGGGGCGCATTTGGATCCCGATCTTCATGAGAATGCAACAGAGTTTGATCCTTGGAGATGGACTGACAATTATAAAGAAATGAACAAAAAGATTATAGCGTTTGGTGGTGGAGTAAAGCTTTGTCCGGGATCTGAAGTTGCAAAAGTAGTGATTGCATTCTTCCTTCATCATCTTGTCCTTAGTTATAGATGGAAAACAAAACCAGATGAATGCCCACTTGCTTACCCTTATGTGCAATTCAGGAGAGGTTTGCTGTTAGAGATTGAACCAGCTGCTGCAGCTTATCAAATCCATTAG

Protein Analysis

555

Amino Acids

62.72

Weight (kDa)

8.44

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 282 - 529 1.5e-47 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1440
AasI GACNNNNNNGTC 1 cut(s) 106
AccI GTMKAC 2 cut(s) 1104, 1296
AciI CCGC 3 cut(s) 97, 861, 1080
AclI AACGTT 1 cut(s) 996
AclWI GGATC 4 cut(s) 1376, 1389, 1409, 1504
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 2 cut(s) 1271, 1325
AcuI CTGAAG 2 cut(s) 404, 1521
AfaI GTAC 1 cut(s) 54
AfiI CCNNNNNNNGG 4 cut(s) 263, 264, 468, 583
AflII CTTAAG 1 cut(s) 284
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 3 cut(s) 22, 355, 1634
AjnI CCWGG 1 cut(s) 853
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AloI GAACNNNNNNTCC 4 cut(s) 1172, 1204, 1335, 1367
Alw21I GWGCWC 2 cut(s) 405, 1281
Alw26I GTCTC 5 cut(s) 263, 505, 643, 708, 1067
Alw44I GTGCAC 1 cut(s) 1277
AlwI GGATC 4 cut(s) 1376, 1389, 1409, 1504
AlwNI CAGNNNCTG 2 cut(s) 595, 1643
AoxI GGCC 3 cut(s) 34, 254, 1114
ApaLI GTGCAC 1 cut(s) 1277
ApeKI GCWGC 6 cut(s) 206, 627, 961, 1640, 1643, 1646
ApoI RAATTY 2 cut(s) 1271, 1325
Asp700I GAANNNNTTC 2 cut(s) 350, 484
AspLEI GCGC 3 cut(s) 1123, 1322, 1375
AspS9I GGNCC 1 cut(s) 255
AsuC2I CCSGG 2 cut(s) 1369, 1494
AsuHPI GGTGA 5 cut(s) 366, 386, 487, 760, 1357
AsuII TTCGAA 3 cut(s) 299, 648, 810
BaeGI GKGCMC 1 cut(s) 1281
BalI TGGCCA 1 cut(s) 1116
BamHI GGATCC 1 cut(s) 1381
BanII GRGCYC 1 cut(s) 405
BbsI GAAGAC 2 cut(s) 810, 990
Bbv12I GWGCWC 2 cut(s) 405, 1281
BbvI GCAGC 6 cut(s) 218, 614, 948, 1627, 1630, 1658
BccI CCATC 7 cut(s) 246, 604, 1175, 1338, 1345, 1419, 1551
BciT130I CCWGG 1 cut(s) 855
BcnI CCSGG 2 cut(s) 1369, 1494
BcoDI GTCTC 5 cut(s) 263, 505, 643, 708, 1067
BfaI CTAG 4 cut(s) 158, 336, 885, 1061
BfmI CTRYAG 1 cut(s) 1644
BfrI CTTAAG 1 cut(s) 284
BisI GCNGC 6 cut(s) 207, 628, 962, 1641, 1644, 1647
BlsI GCNGC 6 cut(s) 208, 629, 963, 1642, 1645, 1648
Bme1390I CCNGG 3 cut(s) 855, 1369, 1494
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 3 cut(s) 313, 859, 1383
BmrFI CCNGG 3 cut(s) 855, 1369, 1494
BmsI GCATC 1 cut(s) 370
BpiI GAAGAC 2 cut(s) 810, 990
Bpu14I TTCGAA 3 cut(s) 299, 648, 810
BpuEI CTTGAG 2 cut(s) 419, 775
BpuMI CCSGG 2 cut(s) 1369, 1494
BsaBI GATNNNNATC 1 cut(s) 1386
BsaI GGTCTC 2 cut(s) 263, 708
BsaJI CCNNGG 4 cut(s) 274, 870, 1368, 1418
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 264, 468, 583
Bse3DI GCAATG 2 cut(s) 328, 958
Bse8I GATNNNNATC 1 cut(s) 1386
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 4 cut(s) 274, 870, 1368, 1418
BseGI GGATG 3 cut(s) 257, 1186, 1349
BseJI GATNNNNATC 1 cut(s) 1386
BseLI CCNNNNNNNGG 4 cut(s) 263, 264, 468, 583
BseMI GCAATG 2 cut(s) 328, 958
BseMII CTCAG 2 cut(s) 29, 752
BseSI GKGCMC 1 cut(s) 1281
BseXI GCAGC 6 cut(s) 218, 614, 948, 1627, 1630, 1658
BshFI GGCC 3 cut(s) 36, 256, 1116
BsiHKAI GWGCWC 2 cut(s) 405, 1281
BsiSI CCGG 3 cut(s) 504, 1368, 1493
BslFI GGGAC 2 cut(s) 445, 550
BslI CCNNNNNNNGG 4 cut(s) 263, 264, 468, 583
BsmAI GTCTC 5 cut(s) 263, 505, 643, 708, 1067
BsmBI CGTCTC 1 cut(s) 505
BsmFI GGGAC 2 cut(s) 445, 550
BsmI GAATGC 3 cut(s) 1405, 1523, 1583
BsnI GGCC 3 cut(s) 36, 256, 1116
Bso31I GGTCTC 2 cut(s) 263, 708
Bsp119I TTCGAA 3 cut(s) 299, 648, 810
Bsp1286I GDGCHC 2 cut(s) 405, 1281
Bsp143I GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
BspACI CCGC 3 cut(s) 97, 861, 1080
BspANI GGCC 3 cut(s) 36, 256, 1116
BspCNI CTCAG 2 cut(s) 30, 753
BspHI TCATGA 2 cut(s) 819, 1393
BspLI GGNNCC 3 cut(s) 313, 859, 1383
BspMAI CTGCAG 1 cut(s) 1648
BspPI GGATC 4 cut(s) 1376, 1389, 1409, 1504
BspQI GCTCTTC 1 cut(s) 771
BspT104I TTCGAA 3 cut(s) 299, 648, 810
BspTI CTTAAG 1 cut(s) 284
BspTNI GGTCTC 2 cut(s) 263, 708
BsrDI GCAATG 2 cut(s) 328, 958
BssECI CCNNGG 4 cut(s) 274, 870, 1368, 1418
BssMI GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
BssT1I CCWWGG 3 cut(s) 274, 870, 1418
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 3 cut(s) 499, 907, 1005
Bst6I CTCTTC 2 cut(s) 771, 918
BstAFI CTTAAG 1 cut(s) 284
BstBI TTCGAA 3 cut(s) 299, 648, 810
BstC8I GCNNGC 1 cut(s) 448
BstDEI CTNAG 4 cut(s) 38, 761, 965, 1547
BstF5I GGATG 3 cut(s) 257, 1186, 1349
BstHHI GCGC 3 cut(s) 1123, 1322, 1375
BstKTI GATC 5 cut(s) 918, 1384, 1390, 1417, 1499
BstMAI GTCTC 5 cut(s) 263, 505, 643, 708, 1067
BstMBI GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
BstMWI GCNNNNNNNGC 4 cut(s) 668, 881, 1127, 1646
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 853, 1367, 1492
BstSFI CTRYAG 1 cut(s) 1644
BstSLI GKGCMC 1 cut(s) 1281
BstV1I GCAGC 6 cut(s) 218, 614, 948, 1627, 1630, 1658
BstV2I GAAGAC 2 cut(s) 810, 990
BstX2I RGATCY 2 cut(s) 1381, 1496
BstXI CCANNNNNNTGG 1 cut(s) 1344
BstYI RGATCY 2 cut(s) 1381, 1496
BsuRI GGCC 3 cut(s) 36, 256, 1116
BtsCI GGATG 3 cut(s) 257, 1186, 1349
BtsIMutI CAGTG 2 cut(s) 720, 903
Cac8I GCNNGC 1 cut(s) 448
CaiI CAGNNNCTG 2 cut(s) 595, 1643
CciI TCATGA 2 cut(s) 819, 1393
CfoI GCGC 3 cut(s) 1123, 1322, 1375
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 53
CviAII CATG 9 cut(s) 212, 247, 409, 618, 820, 919, 1057, 1118, 1394
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 4 cut(s) 38, 761, 965, 1547
DpnI GATC 5 cut(s) 917, 1383, 1389, 1416, 1498
DpnII GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
EaeI YGGCCR 1 cut(s) 1114
Eam1104I CTCTTC 2 cut(s) 771, 918
EarI CTCTTC 2 cut(s) 771, 918
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 3 cut(s) 274, 870, 1418
Eco147I AGGCCT 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 405
Eco31I GGTCTC 2 cut(s) 263, 708
Eco32I GATATC 1 cut(s) 1054
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 2 cut(s) 404, 1521
EcoICRI GAGCTC 1 cut(s) 403
EcoRI GAATTC 1 cut(s) 1325
EcoRII CCWGG 1 cut(s) 853
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 3 cut(s) 274, 870, 1418
EcoT38I GRGCYC 1 cut(s) 405
ErhI CCWWGG 3 cut(s) 274, 870, 1418
Esp3I CGTCTC 1 cut(s) 505
FaeI CATG 9 cut(s) 215, 250, 412, 621, 823, 922, 1060, 1121, 1397
FalI AAGNNNNNCTT 2 cut(s) 883, 915
FaqI GGGAC 2 cut(s) 445, 550
FatI CATG 9 cut(s) 211, 246, 408, 617, 819, 918, 1056, 1117, 1393
FblI GTMKAC 2 cut(s) 1104, 1296
Fnu4HI GCNGC 6 cut(s) 207, 628, 962, 1641, 1644, 1647
FokI GGATG 3 cut(s) 264, 1193, 1356
FriOI GRGCYC 1 cut(s) 405
Fsp4HI GCNGC 6 cut(s) 207, 628, 962, 1641, 1644, 1647
FspBI CTAG 4 cut(s) 158, 336, 885, 1061
GlaI GCGC 3 cut(s) 1122, 1321, 1374
GluI GCNGC 6 cut(s) 207, 628, 962, 1641, 1644, 1647
HaeIII GGCC 3 cut(s) 36, 256, 1116
HapII CCGG 3 cut(s) 504, 1368, 1493
HhaI GCGC 3 cut(s) 1123, 1322, 1375
Hin1II CATG 9 cut(s) 215, 250, 412, 621, 823, 922, 1060, 1121, 1397
Hin6I GCGC 3 cut(s) 1121, 1320, 1373
HinP1I GCGC 3 cut(s) 1121, 1320, 1373
HindIII AAGCTT 1 cut(s) 1484
HinfI GANTC 2 cut(s) 100, 614
HpaII CCGG 3 cut(s) 504, 1368, 1493
HphI GGTGA 5 cut(s) 366, 386, 487, 760, 1357
Hpy166II GTNNAC 4 cut(s) 374, 1105, 1279, 1297
Hpy188I TCNGA 6 cut(s) 311, 423, 591, 708, 762, 1501
Hpy188III TCNNGA 6 cut(s) 336, 820, 1341, 1385, 1394, 1609
Hpy8I GTNNAC 4 cut(s) 374, 1105, 1279, 1297
Hpy99I CGWCG 1 cut(s) 1028
HpyCH4III ACNGT 3 cut(s) 499, 907, 1005
HpyCH4IV ACGT 1 cut(s) 996
HpyCH4V TGCA 9 cut(s) 206, 322, 630, 1279, 1403, 1508, 1523, 1603, 1646
HpyF10VI GCNNNNNNNGC 4 cut(s) 668, 881, 1127, 1646
HpyF3I CTNAG 4 cut(s) 38, 761, 965, 1547
HpySE526I ACGT 1 cut(s) 996
Hsp92II CATG 9 cut(s) 215, 250, 412, 621, 823, 922, 1060, 1121, 1397
HspAI GCGC 3 cut(s) 1121, 1320, 1373
Kzo9I GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
LguI GCTCTTC 1 cut(s) 771
Lsp1109I GCAGC 6 cut(s) 218, 614, 948, 1627, 1630, 1658
LweI GCATC 1 cut(s) 370
MaeI CTAG 4 cut(s) 158, 336, 885, 1061
MaeII ACGT 1 cut(s) 996
MaeIII GTNAC 2 cut(s) 392, 489
MalI GATC 5 cut(s) 917, 1383, 1389, 1416, 1498
MboI GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
MflI RGATCY 2 cut(s) 1381, 1496
MhlI GDGCHC 2 cut(s) 405, 1281
MlsI TGGCCA 1 cut(s) 1116
MluCI AATT 8 cut(s) 22, 135, 1139, 1271, 1304, 1325, 1435, 1604
MluNI TGGCCA 1 cut(s) 1116
MlyI GAGTC 2 cut(s) 94, 623
MmeI TCCRAC 2 cut(s) 289, 457
MnlI CCTC 8 cut(s) 86, 246, 300, 421, 799, 950, 1058, 1607
Mox20I TGGCCA 1 cut(s) 1116
MroXI GAANNNNTTC 2 cut(s) 350, 484
MscI TGGCCA 1 cut(s) 1116
MseI TTAA 7 cut(s) 285, 524, 768, 846, 992, 1142, 1193
MslI CAYNNNNRTG 3 cut(s) 551, 1342, 1398
Msp20I TGGCCA 1 cut(s) 1116
MspA1I CMGCKG 1 cut(s) 1640
MspCI CTTAAG 1 cut(s) 284
MspI CCGG 3 cut(s) 504, 1368, 1493
MspR9I CCNGG 3 cut(s) 855, 1369, 1494
Mva1269I GAATGC 3 cut(s) 1405, 1523, 1583
MvaI CCWGG 1 cut(s) 855
MwoI GCNNNNNNNGC 4 cut(s) 668, 881, 1127, 1646
NciI CCSGG 2 cut(s) 1369, 1494
NdeII GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
NlaIII CATG 9 cut(s) 215, 250, 412, 621, 823, 922, 1060, 1121, 1397
NlaIV GGNNCC 3 cut(s) 313, 859, 1383
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 412
NspV TTCGAA 3 cut(s) 299, 648, 810
PagI TCATGA 2 cut(s) 819, 1393
PceI AGGCCT 1 cut(s) 36
PciI ACATGT 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 3 cut(s) 1405, 1523, 1583
PdmI GAANNNNTTC 2 cut(s) 350, 484
PfoI TCCNGGA 2 cut(s) 853, 1492
PkrI GCNGC 6 cut(s) 208, 629, 963, 1642, 1645, 1648
PleI GAGTC 2 cut(s) 94, 622
PpsI GAGTC 2 cut(s) 94, 622
PscI ACATGT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 1440
Psp124BI GAGCTC 1 cut(s) 405
Psp1406I AACGTT 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspN4I GGNNCC 3 cut(s) 313, 859, 1383
PspPI GGNCC 1 cut(s) 255
PstI CTGCAG 1 cut(s) 1648
PstNI CAGNNNCTG 2 cut(s) 595, 1643
PsuI RGATCY 2 cut(s) 1381, 1496
PvuII CAGCTG 1 cut(s) 1640
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 3 cut(s) 551, 1342, 1398
SacI GAGCTC 1 cut(s) 405
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 7 cut(s) 285, 524, 768, 846, 992, 1142, 1193
SatI GCNGC 6 cut(s) 207, 628, 962, 1641, 1644, 1647
Sau3AI GATC 5 cut(s) 915, 1381, 1387, 1414, 1496
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 2 cut(s) 94, 623
ScrFI CCNGG 3 cut(s) 855, 1369, 1494
SduI GDGCHC 2 cut(s) 405, 1281
SfaNI GCATC 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 1644
SfuI TTCGAA 3 cut(s) 299, 648, 810
SmiMI CAYNNNNRTG 3 cut(s) 551, 1342, 1398
SmlI CTYRAG 3 cut(s) 284, 398, 790
SmoI CTYRAG 3 cut(s) 284, 398, 790
Sse9I AATT 8 cut(s) 22, 135, 1139, 1271, 1304, 1325, 1435, 1604
SseBI AGGCCT 1 cut(s) 36
SsiI CCGC 3 cut(s) 97, 861, 1080
SspI AATATT 2 cut(s) 18, 850
SspMI CTAG 4 cut(s) 158, 336, 885, 1061
SstI GAGCTC 1 cut(s) 405
StuI AGGCCT 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 853, 1367, 1492
StyI CCWWGG 3 cut(s) 274, 870, 1418
TaaI ACNGT 3 cut(s) 499, 907, 1005
TaiI ACGT 1 cut(s) 999
TaqI TCGA 4 cut(s) 299, 648, 810, 1007
TaqII GACCGA 1 cut(s) 728
TasI AATT 8 cut(s) 22, 135, 1139, 1271, 1304, 1325, 1435, 1604
Tru1I TTAA 7 cut(s) 285, 524, 768, 846, 992, 1142, 1193
Tru9I TTAA 7 cut(s) 285, 524, 768, 846, 992, 1142, 1193
TscAI CASTG 2 cut(s) 720, 910
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 6 cut(s) 206, 627, 961, 1640, 1643, 1646
Tsp45I GTSAC 1 cut(s) 392
TspRI CASTG 2 cut(s) 720, 910
Vha464I CTTAAG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 1277
XapI RAATTY 2 cut(s) 1271, 1325
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 1104, 1296
XmnI GAANNNNTTC 2 cut(s) 350, 484
XspI CTAG 4 cut(s) 158, 336, 885, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.