Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029872.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

13239 .. 13763

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029872.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggatggccggtttttggcgaaactcttcacttcctcaagcctcattcttcggattctcccggaaccttcctgcaacaacactgctctaggtatgggaaggttttcaagtcgcatctatttggttcgccgaccatagtttcgtgcgaccttgagctcaacatgttcgttcttcagaacgaagagaagctcttccaagccagttacccaaaaccggtccttggcattctcgggaagtactctttgctcaccgtctccggtgaccttcaccggaagctaaggaacattggcgtcagcttcatcgcctcttccaagtcctcgcctcattttcttcactggattgagaagctctcgatctcgatgatggactcgtggagtggccgaaatcaagtctccttcttcaaagaagctaaaactgtacattcactagtctcaagcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

9.36

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	8, 379
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	239, 420
AfiI	CCNNNNNNNGG	3 cut(s)	17, 214, 221
AflIII	ACRYGT	1 cut(s)	162
AgeI	ACCGGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	109, 403
AhlI	ACTAGT	1 cut(s)	427
AluBI	AGCT	7 cut(s)	157, 190, 277, 297, 349, 410, 438
AluI	AGCT	7 cut(s)	157, 190, 277, 297, 349, 410, 438
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	3 cut(s)	259, 397, 436
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	8, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AsiGI	ACCGGT	1 cut(s)	214
Asp700I	GAANNNNTTC	3 cut(s)	27, 104, 191
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	241, 260, 272
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	3 cut(s)	259, 397, 436
BcuI	ACTAGT	1 cut(s)	427
BfaI	CTAG	2 cut(s)	90, 428
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	3 cut(s)	23, 173, 418
BpuMI	CCSGG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	220
BsaWI	WCCGGW	3 cut(s)	214, 257, 270
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 214, 221
Bse118I	RCCGGY	2 cut(s)	10, 214
Bse1I	ACTGG	2 cut(s)	201, 341
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	3 cut(s)	17, 214, 221
BseNI	ACTGG	2 cut(s)	201, 341
BshFI	GGCC	2 cut(s)	10, 381
BshTI	ACCGGT	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	5 cut(s)	11, 63, 215, 258, 271
BslI	CCNNNNNNNGG	3 cut(s)	17, 214, 221
BsmAI	GTCTC	3 cut(s)	259, 397, 436
BsmBI	CGTCTC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	10, 381
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	1 cut(s)	354
BspANI	GGCC	2 cut(s)	10, 381
BspLI	GGNNCC	1 cut(s)	67
BspQI	GCTCTTC	1 cut(s)	197
BsrFI	RCCGGY	2 cut(s)	10, 214
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	201, 341
BssAI	RCCGGY	2 cut(s)	10, 214
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	220
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	253, 418
Bst6I	CTCTTC	4 cut(s)	33, 177, 197, 313
BstACI	GRCGYC	1 cut(s)	291
BstAUI	TGTACA	1 cut(s)	418
BstDEI	CTNAG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	3 cut(s)	259, 397, 436
BstMBI	GATC	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	166
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	10, 381
BtgZI	GCGATG	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	11
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 334
Cfr10I	RCCGGY	2 cut(s)	10, 214
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	238, 419
CspAI	ACCGGT	1 cut(s)	214
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	2 cut(s)	238, 419
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	8, 379
Eam1104I	CTCTTC	4 cut(s)	33, 177, 197, 313
EarI	CTCTTC	4 cut(s)	33, 177, 197, 313
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	158
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	96, 137, 164
FatI	CATG	1 cut(s)	162
FokI	GGATG	1 cut(s)	18
FriOI	GRGCYC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	90, 428
HaeIII	GGCC	2 cut(s)	10, 381
HapII	CCGG	5 cut(s)	11, 63, 215, 258, 271
HgaI	GACGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	2 cut(s)	56, 368
HpaII	CCGG	5 cut(s)	11, 63, 215, 258, 271
HphI	GGTGA	3 cut(s)	241, 260, 272
Hpy188I	TCNGA	2 cut(s)	55, 177
Hpy188III	TCNNGA	3 cut(s)	232, 352, 358
HpyAV	CCTTC	4 cut(s)	79, 94, 275, 406
HpyCH4III	ACNGT	2 cut(s)	253, 418
HpyCH4V	TGCA	1 cut(s)	76
HpyF3I	CTNAG	1 cut(s)	278
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	354
LguI	GCTCTTC	1 cut(s)	197
LpnPI	CCDG	8 cut(s)	24, 76, 86, 214, 228, 271, 284, 322
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	2 cut(s)	90, 428
MaeIII	GTNAC	2 cut(s)	203, 260
MalI	GATC	1 cut(s)	356
MboI	GATC	1 cut(s)	354
MboII	GAAGA	8 cut(s)	20, 42, 164, 184, 194, 300, 323, 391
MhlI	GDGCHC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	5 cut(s)	47, 54, 316, 328, 333
MroXI	GAANNNNTTC	3 cut(s)	27, 104, 191
MseI	TTAA	1 cut(s)	442
MspI	CCGG	5 cut(s)	11, 63, 215, 258, 271
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	1 cut(s)	260
NspI	RCATGY	1 cut(s)	166
PciI	ACATGT	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	197
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	3 cut(s)	27, 104, 191
PfeI	GAWTC	1 cut(s)	56
PfoI	TCCNGGA	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	214
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	217
RsaI	GTAC	2 cut(s)	239, 420
RsaNI	GTAC	2 cut(s)	238, 419
SacI	GAGCTC	1 cut(s)	159
SapI	GCTCTTC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	442
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	159
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	217
SmlI	CTYRAG	3 cut(s)	38, 152, 433
SmoI	CTYRAG	3 cut(s)	38, 152, 433
SpeI	ACTAGT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	90, 428
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	253, 418
TaqI	TCGA	2 cut(s)	353, 359
TatI	WGTACW	2 cut(s)	237, 418
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	442
Tru9I	TTAA	1 cut(s)	442
TscAI	CASTG	2 cut(s)	89, 341
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	289
TspRI	CASTG	2 cut(s)	89, 341
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	3 cut(s)	27, 104, 191
XspI	CTAG	2 cut(s)	90, 428
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.