Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

1065386 .. 1065745

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTATTTCATGACTTATATGCAGGATAATTTTAAAGAAATGAGCAAAAAGGTGACAGTATTTGGTGGTGGATCAAGGCTATGTCCGGGGGCTGAACTCGCTAAAGTAGTCATTTCATTCTTCCTTCATCATCTTATCCTTAGTTATAGATGGAAAACAAAATCAGATGATTGCCCACTTGCTTACCCTTACGTGCAATTTCGGAGAGGTTTGCTATTAGAAATTGAACCAGCTGCTTCAGATCAACAAGAAAAAGAAAACAAATCGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

91

Amino Acids

10.44

Weight (kDa)

8.58

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	15 - 60	2.1e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	227
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
AlwI	GGATC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	1 cut(s)	144
BcnI	CCSGG	1 cut(s)	87
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	266
BsaAI	YACGTR	1 cut(s)	193
BsaJI	CCNNGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	86
Bsp143I	GATC	2 cut(s)	71, 241
BspDI	ATCGAT	1 cut(s)	266
BspHI	TCATGA	1 cut(s)	9
BspPI	GGATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	71, 241
Bst4CI	ACNGT	1 cut(s)	58
BstBAI	YACGTR	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	140
BstKTI	GATC	2 cut(s)	74, 244
BstMBI	GATC	2 cut(s)	71, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	220
Bsu15I	ATCGAT	1 cut(s)	266
BsuTUI	ATCGAT	1 cut(s)	266
CciI	TCATGA	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	266
CviAII	CATG	1 cut(s)	10
CviJI	RGCY	3 cut(s)	79, 92, 233
CviKI_1	RGCY	3 cut(s)	79, 92, 233
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	2 cut(s)	73, 243
DpnII	GATC	2 cut(s)	71, 241
DraI	TTTAAA	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	222
FaeI	CATG	1 cut(s)	13
FaiI	YATR	6 cut(s)	11, 18, 20, 82, 147, 271
FatI	CATG	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	1 cut(s)	13
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	166, 204, 241
Hpy188III	TCNNGA	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	22, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	71, 241
LpnPI	CCDG	3 cut(s)	8, 99, 243
Lsp1109I	GCAGC	1 cut(s)	220
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	2 cut(s)	73, 243
MboI	GATC	2 cut(s)	71, 241
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	3 cut(s)	28, 197, 222
MnlI	CCTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	71, 241
NlaIII	CATG	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	9
PkrI	GCNGC	1 cut(s)	235
Ppu21I	YACGTR	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	71, 241
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	4 cut(s)	54, 195, 211, 235
Sse9I	AATT	3 cut(s)	28, 197, 222
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	28, 197, 222
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	105, 116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.