Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001045.1

Orthogroup ID

OG0001826

Physical Location & Seq

Genomic Coordinates Forward (+)

71638 .. 71919

Gene Structure 282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001045.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgttcgttcttcagaacgaagagaagctcttccaagccagttacccaaaaccggtccttggcattctcgggaagtactctttgctcaccgtctccggtgaccttcaccggaagctaaggaacattggcgtcagcttcatcgcctcttccaagtcctcgcctcattttcttcactggatcgagaagctctcgatcacgatgatgaactcgtggagtggccgaaatcaagtctccttcttcaaagaagctaaagctgtacattcactagtctcaagcttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005488 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009647 GO:0009791 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0020037 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0046906 GO:0048037 GO:0048856 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

93

Amino Acids

10.53

Weight (kDa)

10.0

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14400 AT5G14400 AT5G14400 AT5G14400
fragaria_vesca	FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g40310 FvH4_6g52040
malus_domestica	MD09G1020600.v1.1 MD09G1020700.v1.1 MD17G1120200.v1.1
prunus_persica	Prupe.3G147200_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G193900_v2.0.a1 Prupe.3G295600_v2.0.a1
pyrus_communis	pycom111g01730
rosa_chinensis	RchiOBHm_Chr2g0155501 RchiOBHm_Chr2g0173551
rosa_laevigata	RLG00000020841 RLG00000022201
rosa_multiflora	Rmu_co8071130.1_g000001 Rmu_sc0001045.1_g000022 Rmu_sc0001046.1_g000003 Rmu_sc0002538.1_g000025 Rmu_sc0003439.1_g000011 Rmu_sc0029872.1_g000004
rosa_roxburghii	Rroxscaffold_2G00078790 Rroxscaffold_2G00093660
rosa_rugosa	Rorug02G0447300 Rorug02G0447400 Rorug02G0571200 Rorug02G0571300
rosa_samantha	Rh2AG513800 Rh2AG650000 Rh2BG524700 Rh2BG660400 Rh2CG498700 Rh2CG625400 Rh2DG533700 Rh2DG675800 Rh5AG197900 Rh5BG196500 Rh5BG196600
rosa_wichuraiana	Rw2G042230 Rw2G053350 Rw5G018070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	2 cut(s)	77, 258
AfiI	CCNNNNNNNGG	2 cut(s)	52, 59
AgeI	ACCGGT	1 cut(s)	52
AgsI	TTSAA	1 cut(s)	241
AhlI	ACTAGT	1 cut(s)	265
AluBI	AGCT	7 cut(s)	28, 115, 135, 187, 248, 254, 276
AluI	AGCT	7 cut(s)	28, 115, 135, 187, 248, 254, 276
Alw26I	GTCTC	3 cut(s)	97, 235, 274
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	217
AsiGI	ACCGGT	1 cut(s)	52
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	79, 98, 110
AvaI	CYCGRG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	97, 235, 274
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BmcAI	AGTACT	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	3 cut(s)	52, 95, 108
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 59
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	2 cut(s)	39, 179
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	52, 59
BseNI	ACTGG	2 cut(s)	39, 179
BshFI	GGCC	1 cut(s)	219
BshTI	ACCGGT	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	53, 96, 109
BslI	CCNNNNNNNGG	2 cut(s)	52, 59
BsmAI	GTCTC	3 cut(s)	97, 235, 274
BsmBI	CGTCTC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	219
BsoBI	CYCGRG	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	177, 192
BspANI	GGCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	39, 179
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	177, 192
BssNI	GRCGYC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	15, 35, 151
BstACI	GRCGYC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	116
BstEII	GGTNACC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	180, 195
BstMAI	GTCTC	3 cut(s)	97, 235, 274
BstMBI	GATC	2 cut(s)	177, 192
BstPI	GGTNACC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	172
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	76, 257
CspAI	ACCGGT	1 cut(s)	52
CviJI	RGCY	9 cut(s)	28, 38, 115, 135, 187, 219, 248, 254, 276
CviKI_1	RGCY	9 cut(s)	28, 38, 115, 135, 187, 219, 248, 254, 276
CviQI	GTAC	2 cut(s)	76, 257
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	2 cut(s)	179, 194
DpnII	GATC	2 cut(s)	177, 192
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	3 cut(s)	15, 35, 151
EarI	CTCTTC	3 cut(s)	15, 35, 151
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	68
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
Esp3I	CGTCTC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	219
HapII	CCGG	3 cut(s)	53, 96, 109
HgaI	GACGC	1 cut(s)	118
Hin1I	GRCGYC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	274
HpaII	CCGG	3 cut(s)	53, 96, 109
HphI	GGTGA	3 cut(s)	79, 98, 110
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	4 cut(s)	70, 181, 190, 196
HpyAV	CCTTC	2 cut(s)	113, 244
HpyCH4III	ACNGT	1 cut(s)	91
HpyF3I	CTNAG	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	177, 192
LguI	GCTCTTC	1 cut(s)	35
LpnPI	CCDG	5 cut(s)	52, 66, 109, 122, 160
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	41, 98
MalI	GATC	2 cut(s)	179, 194
MboI	GATC	2 cut(s)	177, 192
MboII	GAAGA	5 cut(s)	22, 32, 138, 161, 229
MnlI	CCTC	3 cut(s)	154, 166, 171
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	280
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	3 cut(s)	53, 96, 109
Mva1269I	GAATGC	1 cut(s)	63
NdeII	GATC	2 cut(s)	177, 192
NmuCI	GTSAC	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	29
PinAI	ACCGGT	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	55
RsaI	GTAC	2 cut(s)	77, 258
RsaNI	GTAC	2 cut(s)	76, 257
RseI	CAYNNNNRTG	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	280
Sau3AI	GATC	2 cut(s)	177, 192
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	77
SetI	ASST	8 cut(s)	30, 105, 117, 137, 189, 250, 256, 278
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	58
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	2 cut(s)	180, 191
TatI	WGTACW	2 cut(s)	75, 256
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	127, 218
TspRI	CASTG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.