Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

2907736 .. 2908350

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGTGGATTCTTATTTAAAGTATGTTGTAGTTTGTGTTCTGTTTGCATATGTGGGGTTATTGAACTTTGGGTTGGTTTCAGTGAAGGCCGTTTGGTTCTTTGCTCTCAATTATGCTGCAGATGCTGCCTGCACCGTTCTACGGGTTGATCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005911 GO:0006457 GO:0006458 GO:0008150 GO:0009506 GO:0009987 GO:0016020 GO:0030054 GO:0032879 GO:0032991 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051082 GO:0055044 GO:0061077 GO:0065007 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

53

Amino Acids

5.8

Weight (kDa)

4.92

Isoelectric Point (pI)

24.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	116, 125
BbvI	GCAGC	2 cut(s)	103, 112
BceAI	ACGGC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	117, 126
BlsI	GCNGC	2 cut(s)	118, 127
BmsI	GCATC	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	103, 112
BsgI	GTGCAG	1 cut(s)	115
BshFI	GGCC	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	148
BspANI	GGCC	1 cut(s)	89
BspMAI	CTGCAG	1 cut(s)	121
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 125
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	103, 112
BsuRI	GGCC	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	130
CaiI	CAGNNNCTG	1 cut(s)	125
CviJI	RGCY	1 cut(s)	89
CviKI_1	RGCY	1 cut(s)	89
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
DraI	TTTAAA	1 cut(s)	18
FaiI	YATR	4 cut(s)	24, 49, 51, 114
FauNDI	CATATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	148
Fnu4HI	GCNGC	2 cut(s)	117, 126
Fsp4HI	GCNGC	2 cut(s)	117, 126
GluI	GCNGC	2 cut(s)	117, 126
HaeIII	GGCC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	8
Hpy188III	TCNNGA	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	3 cut(s)	47, 119, 132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 125
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LpnPI	CCDG	2 cut(s)	137, 142
Lsp1109I	GCAGC	2 cut(s)	103, 112
LweI	GCATC	1 cut(s)	112
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MluCI	AATT	1 cut(s)	109
MseI	TTAA	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	122, 125
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	2 cut(s)	118, 127
PsrI	GAACNNNNNNTAC	2 cut(s)	21, 53
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	117, 126
Sau3AI	GATC	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	117
SgeI	CNNG	2 cut(s)	141, 155
Sse9I	AATT	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	136
TasI	AATT	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	2 cut(s)	116, 125
TspRI	CASTG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.