Rh1DG042000

Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
6696996 .. 6703221
6226 bp
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UTR
Exon/CDS
Intron
Rh1DG042000.1

Sequence Viewer

Length: 327 bp
ATGGTCACTGGGCAAAATCACTTGGATCTACCTTTTTCAGGTGGCTTGGATGGTCCCCTTTGTGGTCATTTCATTACTACCACTCATGGGTTCCAGACACCAAGGCATTCAGCACCTGTTCTTGAGAGAGGGGAATGGTCTGCTACTTTTGACTTCTTAGGACATAATGCACCTGTGATTGTGGGACCTTTGGCCTTTTATAAGAGCTTCATCCCAAATTTTGGAAGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAGCAGATAGAAAGAAAGAAGATGACATCTTGCTTCTGCGGATGGTATTGCCCATGGTTTTGA

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

6.94

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 221
AciI CCGC 1 cut(s) 303
AclWI GGATC 2 cut(s) 33, 241
AcsI RAATTY 1 cut(s) 217
AfiI CCNNNNNNNGG 4 cut(s) 38, 62, 87, 221
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 2 cut(s) 33, 241
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 217
AspS9I GGNCC 2 cut(s) 53, 185
AvaII GGWCC 2 cut(s) 53, 185
BccI CCATC 2 cut(s) 44, 300
BclI TGATCA 1 cut(s) 246
BfaI CTAG 1 cut(s) 230
Bme18I GGWCC 2 cut(s) 53, 185
BmgT120I GGNCC 2 cut(s) 53, 185
BmiI GGNNCC 3 cut(s) 55, 92, 186
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 101, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 62, 87, 221
Bse1I ACTGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 101, 317
BseGI GGATG 3 cut(s) 55, 210, 311
BseLI CCNNNNNNNGG 4 cut(s) 38, 62, 87, 221
BseNI ACTGG 1 cut(s) 13
BshFI GGCC 1 cut(s) 194
BslFI GGGAC 2 cut(s) 39, 198
BslI CCNNNNNNNGG 4 cut(s) 38, 62, 87, 221
BsmFI GGGAC 2 cut(s) 39, 198
BsmI GAATGC 1 cut(s) 106
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 25, 233, 246
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 1 cut(s) 303
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 55, 92, 186
BspPI GGATC 2 cut(s) 33, 241
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 101, 317
BssMI GATC 3 cut(s) 25, 233, 246
BssT1I CCWWGG 2 cut(s) 101, 317
BstDEI CTNAG 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 55, 210, 311
BstKTI GATC 3 cut(s) 28, 236, 249
BstMBI GATC 3 cut(s) 25, 233, 246
BstX2I RGATCY 2 cut(s) 25, 233
BstYI RGATCY 2 cut(s) 25, 233
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 3 cut(s) 55, 210, 311
BtsIMutI CAGTG 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 53, 185
CviAII CATG 3 cut(s) 86, 250, 318
CviJI RGCY 4 cut(s) 45, 194, 207, 229
CviKI_1 RGCY 4 cut(s) 45, 194, 207, 229
DdeI CTNAG 1 cut(s) 157
DpnI GATC 3 cut(s) 27, 235, 248
DpnII GATC 3 cut(s) 25, 233, 246
Eco130I CCWWGG 2 cut(s) 101, 317
Eco47I GGWCC 2 cut(s) 53, 185
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 185
EcoT14I CCWWGG 2 cut(s) 101, 317
ErhI CCWWGG 2 cut(s) 101, 317
FaeI CATG 3 cut(s) 89, 253, 321
FaiI YATR 5 cut(s) 87, 165, 201, 251, 319
FaqI GGGAC 2 cut(s) 39, 198
FatI CATG 3 cut(s) 85, 249, 317
FbaI TGATCA 1 cut(s) 246
FokI GGATG 3 cut(s) 62, 197, 318
FspBI CTAG 1 cut(s) 230
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 3 cut(s) 89, 253, 321
Hpy188III TCNNGA 2 cut(s) 94, 122
HpyAV CCTTC 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 3 cut(s) 89, 253, 321
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 3 cut(s) 25, 233, 246
LpnPI CCDG 4 cut(s) 24, 107, 129, 186
MaeI CTAG 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 4
MalI GATC 3 cut(s) 27, 235, 248
MboI GATC 3 cut(s) 25, 233, 246
MboII GAAGA 1 cut(s) 295
MflI RGATCY 2 cut(s) 25, 233
MluCI AATT 1 cut(s) 217
MnlI CCTC 1 cut(s) 122
Mva1269I GAATGC 1 cut(s) 106
NcoI CCATGG 1 cut(s) 317
NdeII GATC 3 cut(s) 25, 233, 246
NlaIII CATG 3 cut(s) 89, 253, 321
NlaIV GGNNCC 3 cut(s) 55, 92, 186
NmuCI GTSAC 1 cut(s) 4
PctI GAATGC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 185
PsiI TTATAA 1 cut(s) 201
Psp5II RGGWCCY 1 cut(s) 185
PspN4I GGNNCC 3 cut(s) 55, 92, 186
PspPI GGNCC 2 cut(s) 53, 185
PspPPI RGGWCCY 1 cut(s) 185
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 25, 233
Sau3AI GATC 3 cut(s) 25, 233, 246
Sau96I GGNCC 2 cut(s) 53, 185
SetI ASST 7 cut(s) 34, 43, 118, 175, 190, 209, 263
SinI GGWCC 2 cut(s) 53, 185
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 303
SspMI CTAG 1 cut(s) 230
StyI CCWWGG 2 cut(s) 101, 317
TasI AATT 1 cut(s) 217
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 61, 199
TspRI CASTG 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 53, 185
XagI CCTNNNNNAGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 217
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.