Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

50565845 .. 50567613

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG344000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGTAGATCAAGGGTTACTCTACTGCCATGGACAGATAGGGCTGATGTAGAGGATCAACCGCCTGCGATTTCATTCTTCTTTCGTCAGCTGTTGTCAAGATTTGTTGTTTTGCGGGGACCTTTGGCCTTTTATAAGGGTTTCATCCCAAATTTTGGACGCCTTGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAACAGGGATTGACTTCTTGGAATTTAAACCTTAAGAGGTTGCGGCAGCAGCGGCCTGGGAGGAGGAAGCAAAGCATTAGATCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

95

Amino Acids

11.25

Weight (kDa)

11.94

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	4 cut(s)	62, 115, 241, 250
AclWI	GGATC	2 cut(s)	63, 175
AcsI	RAATTY	2 cut(s)	151, 220
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflII	CTTAAG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
AlwI	GGATC	2 cut(s)	63, 175
AoxI	GGCC	2 cut(s)	126, 251
ApeKI	GCWGC	2 cut(s)	244, 247
ApoI	RAATTY	2 cut(s)	151, 220
AspS9I	GGNCC	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	256, 259
BciT130I	CCWGG	1 cut(s)	255
BclI	TGATCA	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	230
BisI	GCNGC	4 cut(s)	242, 245, 248, 251
BlsI	GCNGC	4 cut(s)	243, 246, 249, 252
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	29, 163, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	255
BseDI	CCNNGG	3 cut(s)	29, 163, 254
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	256, 259
BshFI	GGCC	2 cut(s)	128, 253
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	128, 253
Bsp143I	GATC	5 cut(s)	8, 55, 167, 180, 278
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	4 cut(s)	62, 115, 241, 250
BspANI	GGCC	2 cut(s)	128, 253
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	63, 175
BspTI	CTTAAG	1 cut(s)	230
BssECI	CCNNGG	3 cut(s)	29, 163, 254
BssMI	GATC	5 cut(s)	8, 55, 167, 180, 278
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	29, 163
Bst2UI	CCWGG	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	5 cut(s)	11, 58, 170, 183, 281
BstMBI	GATC	5 cut(s)	8, 55, 167, 180, 278
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 250
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstV1I	GCAGC	2 cut(s)	256, 259
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	128, 253
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	119
CseI	GACGC	1 cut(s)	168
CviAII	CATG	2 cut(s)	30, 184
CviJI	RGCY	4 cut(s)	44, 91, 128, 253
CviKI_1	RGCY	4 cut(s)	44, 91, 128, 253
DpnI	GATC	5 cut(s)	10, 57, 169, 182, 280
DpnII	GATC	5 cut(s)	8, 55, 167, 180, 278
DraI	TTTAAA	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	29, 163
Eco47I	GGWCC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	29, 163
ErhI	CCWWGG	2 cut(s)	29, 163
FaeI	CATG	2 cut(s)	33, 187
FaiI	YATR	3 cut(s)	31, 135, 185
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	29, 183
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	242, 245, 248, 251
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	242, 245, 248, 251
GluI	GCNGC	4 cut(s)	242, 245, 248, 251
HaeIII	GGCC	2 cut(s)	128, 253
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	33, 187
Hpy188III	TCNNGA	1 cut(s)	99
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 250
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	2 cut(s)	33, 187
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	5 cut(s)	8, 55, 167, 180, 278
LpnPI	CCDG	4 cut(s)	78, 188, 240, 267
Lsp1109I	GCAGC	2 cut(s)	256, 259
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	5 cut(s)	10, 57, 169, 182, 280
MboI	GATC	5 cut(s)	8, 55, 167, 180, 278
MboII	GAAGA	1 cut(s)	70
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	2 cut(s)	151, 220
MnlI	CCTC	4 cut(s)	46, 228, 252, 255
MseI	TTAA	2 cut(s)	224, 231
MspA1I	CMGCKG	2 cut(s)	91, 250
MspCI	CTTAAG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	247, 250
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	5 cut(s)	8, 55, 167, 180, 278
NlaIII	CATG	2 cut(s)	33, 187
NlaIV	GGNNCC	1 cut(s)	120
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	4 cut(s)	243, 246, 249, 252
PpuMI	RGGWCCY	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	119
PspPPI	RGGWCCY	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	224, 231
SatI	GCNGC	4 cut(s)	242, 245, 248, 251
Sau3AI	GATC	5 cut(s)	8, 55, 167, 180, 278
Sau96I	GGNCC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	5 cut(s)	93, 124, 197, 231, 239
SinI	GGWCC	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	151, 220
SsiI	CCGC	4 cut(s)	62, 115, 241, 250
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	29, 163
TasI	AATT	2 cut(s)	151, 220
TauI	GCSGC	2 cut(s)	244, 253
Tru1I	TTAA	2 cut(s)	224, 231
Tru9I	TTAA	2 cut(s)	224, 231
TseI	GCWGC	2 cut(s)	244, 247
TspDTI	ATGAA	2 cut(s)	63, 133
Van91I	CCANNNNNTGG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	119
XapI	RAATTY	2 cut(s)	151, 220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.