Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

5312147 .. 5314996

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTTAACAAAGAAAAATCTTGCTGCATTAACTACAGGACGTAGTTGGGATCTCTGGACTGGAATTGGACCTAACATTGCATGTAATGCAATCATTAATGCTGCTGAACTAGCCAGTTATGATCAAGTGAAGCTGACACTCTTGAAAATTCCCGGGTTTAAGGACATTGTTGTCACTCATCTTTTTGCTAGTCTAGGGCAGGTTGGTTTGCCGTCCGCAGTGGTTCACCAGTTGATGTGGTGGATGACGGGCTGGCATTGGGCGTCGAGTATGGTGGGACCTTTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTTGAGCAGGTACAAGTTTCGACGCTGGAAAATGATTTGTGGCCGAGAAATTTTAAATACACACCCCTAATCACTCAATACACATCCCTATTATTTTATATTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

154

Amino Acids

17.35

Weight (kDa)

9.13

Isoelectric Point (pI)

19.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	2 cut(s)	190, 352
AccB7I	CCANNNNNTGG	1 cut(s)	314
AciI	CCGC	1 cut(s)	216
AclWI	GGATC	2 cut(s)	57, 334
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	3 cut(s)	147, 310, 403
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	1 cut(s)	366
AfiI	CCNNNNNNNGG	2 cut(s)	314, 361
AgsI	TTSAA	2 cut(s)	145, 459
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	2 cut(s)	57, 334
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	285, 395
ApeKI	GCWGC	2 cut(s)	23, 101
ApoI	RAATTY	3 cut(s)	147, 310, 403
AseI	ATTAAT	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	68, 278
AsuC2I	CCSGG	2 cut(s)	153, 154
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	68, 278
BbvI	GCAGC	2 cut(s)	10, 88
BceAI	ACGGC	2 cut(s)	196, 335
BclI	TGATCA	2 cut(s)	121, 339
BcnI	CCSGG	2 cut(s)	153, 154
BfaI	CTAG	4 cut(s)	110, 189, 194, 323
BfmI	CTRYAG	1 cut(s)	33
BfuAI	ACCTGC	2 cut(s)	190, 352
BisI	GCNGC	2 cut(s)	24, 102
BlsI	GCNGC	2 cut(s)	25, 103
Bme1390I	CCNGG	2 cut(s)	153, 154
Bme18I	GGWCC	2 cut(s)	68, 278
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	68, 278
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	2 cut(s)	153, 154
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	153, 154
BsaHI	GRCGYC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 361
Bse1I	ACTGG	3 cut(s)	64, 114, 229
Bse3DI	GCAATG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	3 cut(s)	249, 303, 437
BseLI	CCNNNNNNNGG	2 cut(s)	314, 361
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	64, 114, 229
BseXI	GCAGC	2 cut(s)	10, 88
BshFI	GGCC	2 cut(s)	287, 397
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	314, 361
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	2 cut(s)	287, 397
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	49, 121, 326, 339
BspACI	CCGC	1 cut(s)	216
BspANI	GGCC	2 cut(s)	287, 397
BspLI	GGNNCC	1 cut(s)	279
BspMI	ACCTGC	2 cut(s)	190, 352
BspPI	GGATC	2 cut(s)	57, 334
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	64, 114, 229
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	4 cut(s)	49, 121, 326, 339
BssNI	GRCGYC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	254
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	3 cut(s)	249, 303, 437
BstKTI	GATC	4 cut(s)	52, 124, 329, 342
BstMBI	GATC	4 cut(s)	49, 121, 326, 339
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 110
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	2 cut(s)	151, 152
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	2 cut(s)	10, 88
BstX2I	RGATCY	2 cut(s)	49, 326
BstYI	RGATCY	2 cut(s)	49, 326
BsuRI	GGCC	2 cut(s)	287, 397
BtsCI	GGATG	3 cut(s)	249, 303, 437
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	2 cut(s)	190, 352
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	68, 278
Cfr9I	CCCGGG	1 cut(s)	152
CseI	GACGC	2 cut(s)	252, 385
Csp6I	GTAC	1 cut(s)	365
CviAII	CATG	2 cut(s)	81, 343
CviJI	RGCY	7 cut(s)	113, 133, 252, 287, 300, 322, 397
CviKI_1	RGCY	7 cut(s)	113, 133, 252, 287, 300, 322, 397
CviQI	GTAC	1 cut(s)	365
DpnI	GATC	4 cut(s)	51, 123, 328, 341
DpnII	GATC	4 cut(s)	49, 121, 326, 339
DraI	TTTAAA	1 cut(s)	409
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EaeI	YGGCCR	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	68, 278
Eco88I	CYCGRG	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	278
FaeI	CATG	2 cut(s)	84, 346
FaiI	YATR	6 cut(s)	82, 120, 272, 294, 344, 453
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	80, 342
FbaI	TGATCA	2 cut(s)	121, 339
Fnu4HI	GCNGC	2 cut(s)	24, 102
FokI	GGATG	3 cut(s)	256, 290, 424
Fsp4HI	GCNGC	2 cut(s)	24, 102
FspBI	CTAG	4 cut(s)	110, 189, 194, 323
GluI	GCNGC	2 cut(s)	24, 102
HaeIII	GGCC	2 cut(s)	287, 397
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	2 cut(s)	252, 385
Hin1I	GRCGYC	1 cut(s)	263
Hin1II	CATG	2 cut(s)	84, 346
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	6, 226
Hpy188III	TCNNGA	2 cut(s)	55, 142
Hpy8I	GTNNAC	2 cut(s)	6, 226
Hpy99I	CGWCG	2 cut(s)	268, 379
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	26, 80, 89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 110
HpySE526I	ACGT	1 cut(s)	40
Hsp92I	GRCGYC	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	84, 346
Ksp22I	TGATCA	2 cut(s)	121, 339
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	4 cut(s)	49, 121, 326, 339
Lsp1109I	GCAGC	2 cut(s)	10, 88
MaeI	CTAG	4 cut(s)	110, 189, 194, 323
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	51, 123, 328, 341
MboI	GATC	4 cut(s)	49, 121, 326, 339
MflI	RGATCY	2 cut(s)	49, 326
MluCI	AATT	5 cut(s)	63, 147, 310, 403, 460
MseI	TTAA	6 cut(s)	5, 29, 96, 159, 408, 463
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	2 cut(s)	153, 154
MwoI	GCNNNNNNNGC	2 cut(s)	86, 110
NciI	CCSGG	2 cut(s)	153, 154
NdeII	GATC	4 cut(s)	49, 121, 326, 339
NlaIII	CATG	2 cut(s)	84, 346
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	423
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	84
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	25, 103
PpuMI	RGGWCCY	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	68, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	49, 326
RsaI	GTAC	1 cut(s)	366
RsaNI	GTAC	1 cut(s)	365
SaqAI	TTAA	6 cut(s)	5, 29, 96, 159, 408, 463
SatI	GCNGC	2 cut(s)	24, 102
Sau3AI	GATC	4 cut(s)	49, 121, 326, 339
Sau96I	GGNCC	2 cut(s)	68, 278
ScrFI	CCNGG	2 cut(s)	153, 154
SetI	ASST	6 cut(s)	43, 73, 135, 204, 283, 366
SfcI	CTRYAG	1 cut(s)	33
SinI	GGWCC	2 cut(s)	68, 278
SmaI	CCCGGG	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	5 cut(s)	63, 147, 310, 403, 460
SsiI	CCGC	1 cut(s)	216
SspMI	CTAG	4 cut(s)	110, 189, 194, 323
StyD4I	CCNGG	2 cut(s)	151, 152
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	2 cut(s)	266, 374
TasI	AATT	5 cut(s)	63, 147, 310, 403, 460
Tru1I	TTAA	6 cut(s)	5, 29, 96, 159, 408, 463
Tru9I	TTAA	6 cut(s)	5, 29, 96, 159, 408, 463
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	23, 101
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	292
TspMI	CCCGGG	1 cut(s)	152
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	68, 278
VspI	ATTAAT	1 cut(s)	96
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	147, 310, 403
XceI	RCATGY	1 cut(s)	84
XmaI	CCCGGG	1 cut(s)	152
XspI	CTAG	4 cut(s)	110, 189, 194, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.