Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

63783143 .. 63785432

Gene Structure 2290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030580

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAACCACCCAGTCCACCTCAAGCCGGAGCAAAAAACCTTGCCGGCGGAGATCGTCAAAGTCGTTTTCCCTGACCACCTCATCCTCGCCGACCTTCCGGTGGCCAAGGGCATTGGGTCAGCCACCGCAGCTTCGCTTGTCAAGACAATCGGTCGCCGGTCCCGTCGTCAGCTCGGTGAACGTGTCCACTTTTGTGTTCACTGTGATTTCCCGATTGCCATCTATGGAAGACTAGGACCTTTGGCCTTTTATAAGGGCTTCAGCCCAAATTTTGGAAGACTAGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAGCAGATAGAAAGAAAGAAGACGACATCTTGCTTCTGCGGATGGTATTGCCCATGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.18

Weight (kDa)

9.58

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	272
AciI	CCGC	3 cut(s)	47, 126, 354
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	25, 100, 272
AflIII	ACRYGT	1 cut(s)	181
AhdI	GACNNNNNGTC	1 cut(s)	150
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	131, 172
AluI	AGCT	2 cut(s)	131, 172
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	2 cut(s)	102, 243
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	159, 236
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	2 cut(s)	159, 236
BalI	TGGCCA	1 cut(s)	104
BbsI	GAAGAC	3 cut(s)	235, 283, 341
BbvI	GCAGC	1 cut(s)	140
BccI	CCATC	2 cut(s)	227, 351
BclI	TGATCA	1 cut(s)	297
BfaI	CTAG	2 cut(s)	233, 281
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	159, 236
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	159, 236
BmiI	GGNNCC	1 cut(s)	161
BmrI	ACTGGG	1 cut(s)	5
BmuI	ACTGGG	1 cut(s)	5
BpiI	GAAGAC	3 cut(s)	235, 283, 341
BpuEI	CTTGAG	1 cut(s)	5
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	105, 368
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 100, 272
Bse118I	RCCGGY	2 cut(s)	43, 156
Bse1I	ACTGG	1 cut(s)	11
Bse8I	GATNNNNATC	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	105, 368
BseGI	GGATG	2 cut(s)	81, 362
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	25, 100, 272
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	104, 245
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	4 cut(s)	26, 44, 98, 157
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	3 cut(s)	25, 100, 272
BsmFI	GGGAC	1 cut(s)	145
BsnI	GGCC	2 cut(s)	104, 245
Bsp143I	GATC	3 cut(s)	51, 284, 297
Bsp19I	CCATGG	1 cut(s)	368
BspACI	CCGC	3 cut(s)	47, 126, 354
BspANI	GGCC	2 cut(s)	104, 245
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	292
BsrFI	RCCGGY	2 cut(s)	43, 156
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	2 cut(s)	43, 156
BssECI	CCNNGG	2 cut(s)	105, 368
BssMI	GATC	3 cut(s)	51, 284, 297
BssT1I	CCWWGG	2 cut(s)	105, 368
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	81, 362
BstKTI	GATC	3 cut(s)	54, 287, 300
BstMBI	GATC	3 cut(s)	51, 284, 297
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	140
BstV2I	GAAGAC	3 cut(s)	235, 283, 341
BstX2I	RGATCY	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	104, 245
BtgI	CCRYGG	1 cut(s)	368
BtsCI	GGATG	2 cut(s)	81, 362
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	45
Cfr10I	RCCGGY	2 cut(s)	43, 156
Cfr13I	GGNCC	2 cut(s)	159, 236
CviAII	CATG	2 cut(s)	301, 369
CviJI	RGCY	8 cut(s)	25, 104, 122, 131, 172, 245, 258, 264
CviKI_1	RGCY	8 cut(s)	25, 104, 122, 131, 172, 245, 258, 264
DpnI	GATC	3 cut(s)	53, 286, 299
DpnII	GATC	3 cut(s)	51, 284, 297
DriI	GACNNNNNGTC	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	105, 368
Eco47I	GGWCC	2 cut(s)	159, 236
Eco57I	CTGAAG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	105, 368
ErhI	CCWWGG	2 cut(s)	105, 368
FaeI	CATG	2 cut(s)	304, 372
FaiI	YATR	4 cut(s)	225, 252, 302, 370
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	300, 368
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	68, 369
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	233, 281
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	104, 245
HapII	CCGG	4 cut(s)	26, 44, 98, 157
Hin1II	CATG	2 cut(s)	304, 372
HpaII	CCGG	4 cut(s)	26, 44, 98, 157
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	16, 179, 187, 199
Hpy188III	TCNNGA	2 cut(s)	142, 211
Hpy8I	GTNNAC	4 cut(s)	16, 179, 187, 199
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	2 cut(s)	304, 372
KroI	GCCGGC	1 cut(s)	43
KroNI	GCCGGC	1 cut(s)	45
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	3 cut(s)	51, 284, 297
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	24, 39, 57, 84, 111, 170
Lsp1109I	GCAGC	1 cut(s)	140
MaeI	CTAG	2 cut(s)	233, 281
MaeII	ACGT	1 cut(s)	181
MalI	GATC	3 cut(s)	53, 286, 299
MboI	GATC	3 cut(s)	51, 284, 297
MboII	GAAGA	3 cut(s)	240, 288, 346
MflI	RGATCY	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	104
MnlI	CCTC	3 cut(s)	29, 89, 95
Mox20I	TGGCCA	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	43
MscI	TGGCCA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	4 cut(s)	26, 44, 98, 157
MwoI	GCNNNNNNNGC	1 cut(s)	128
NaeI	GCCGGC	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	368
NdeII	GATC	3 cut(s)	51, 284, 297
NgoMIV	GCCGGC	1 cut(s)	43
NlaIII	CATG	2 cut(s)	304, 372
NlaIV	GGNNCC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 160
PdiI	GCCGGC	1 cut(s)	45
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	159, 236
PspPPI	RGGWCCY	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	192
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	3 cut(s)	51, 284, 297
Sau96I	GGNCC	2 cut(s)	159, 236
SetI	ASST	9 cut(s)	21, 41, 81, 96, 133, 174, 184, 241, 314
SinI	GGWCC	2 cut(s)	159, 236
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	3 cut(s)	47, 126, 354
SspMI	CTAG	2 cut(s)	233, 281
StyI	CCWWGG	2 cut(s)	105, 368
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	184
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	268
TscAI	CASTG	1 cut(s)	206
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	159, 236
XapI	RAATTY	1 cut(s)	268
XspI	CTAG	2 cut(s)	233, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.