Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

2934931 .. 2936302

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTTTTGCGTTTACAAACACCAAGCGAAGTGTTGCTCCAGCGGGAGTGATCTTAGCCTCTGGAGGCCAACCAAGAATCTCAAGACCGGCCCTGACCGTCATTGCGGCGAAAGTCAGACTAATCCACTGCACCGCAGACGCACGAACCCAAAGGGTCCCTCAAATCTGCATGATGTGACAAAGGTTGTGCCACCTGATTGCCTAGATAAAACGAACTTGGAAGATAAAAGGCCTGGAGATATATTCATCGAGCAACATAGAGCTTTAAATGATCTCTTGGTGAATCAAAAGGAGATGTCATGGACGACCTTGCTTGCAATATTCGCTAGTTCCTTTGGGATTGTCGCAGCCCTAGTTGGTGCTGCAAATTTTGTGTTGCAACAGATTCGAAGCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

9.12

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 105, 133
AcsI	RAATTY	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
AoxI	GGCC	3 cut(s)	65, 88, 230
ApeKI	GCWGC	2 cut(s)	347, 362
ApoI	RAATTY	1 cut(s)	367
AspS9I	GGNCC	2 cut(s)	89, 155
AsuHPI	GGTGA	1 cut(s)	292
AsuII	TTCGAA	1 cut(s)	388
AvaII	GGWCC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	349, 359
BcgI	CGANNNNNNTGC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	3 cut(s)	203, 327, 353
BisI	GCNGC	3 cut(s)	106, 348, 363
BlsI	GCNGC	3 cut(s)	107, 349, 364
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	89, 155
BmiI	GGNNCC	2 cut(s)	156, 157
BmrFI	CCNGG	1 cut(s)	234
BpmI	CTGGAG	3 cut(s)	22, 82, 255
Bpu14I	TTCGAA	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	100
BseXI	GCAGC	2 cut(s)	349, 359
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	3 cut(s)	67, 90, 232
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	67, 90, 232
Bsp119I	TTCGAA	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	49, 271
BspACI	CCGC	3 cut(s)	42, 105, 133
BspANI	GGCC	3 cut(s)	67, 90, 232
BspLI	GGNNCC	2 cut(s)	156, 157
BspT104I	TTCGAA	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	86
BssAI	RCCGGY	1 cut(s)	86
BssMI	GATC	2 cut(s)	49, 271
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	52, 274
BstMBI	GATC	2 cut(s)	49, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	2 cut(s)	349, 359
BsuRI	GGCC	3 cut(s)	67, 90, 232
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	89, 155
CseI	GACGC	1 cut(s)	147
CviAII	CATG	2 cut(s)	170, 300
CviJI	RGCY	6 cut(s)	57, 67, 90, 232, 263, 350
CviKI_1	RGCY	6 cut(s)	57, 67, 90, 232, 263, 350
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	51, 273
DpnII	GATC	2 cut(s)	49, 271
DraI	TTTAAA	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	173, 303
FaiI	YATR	4 cut(s)	171, 242, 258, 301
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	169, 299
FauI	CCCGC	1 cut(s)	35
Fnu4HI	GCNGC	3 cut(s)	106, 348, 363
Fsp4HI	GCNGC	3 cut(s)	106, 348, 363
FspBI	CTAG	3 cut(s)	203, 327, 353
GluI	GCNGC	3 cut(s)	106, 348, 363
GsuI	CTGGAG	3 cut(s)	22, 82, 255
HaeIII	GGCC	3 cut(s)	67, 90, 232
HapII	CCGG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	2 cut(s)	173, 303
HinfI	GANTC	3 cut(s)	76, 283, 385
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	61, 82
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	130, 169, 317, 365, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	173, 303
KflI	GGGWCCC	1 cut(s)	155
Kzo9I	GATC	2 cut(s)	49, 271
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	7 cut(s)	46, 52, 100, 105, 207, 219, 246
Lsp1109I	GCAGC	2 cut(s)	349, 359
MaeI	CTAG	3 cut(s)	203, 327, 353
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	51, 273
MboI	GATC	2 cut(s)	49, 271
MboII	GAAGA	1 cut(s)	233
MluCI	AATT	1 cut(s)	367
MnlI	CCTC	3 cut(s)	57, 68, 169
MseI	TTAA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	49, 271
NlaIII	CATG	2 cut(s)	173, 303
NlaIV	GGNNCC	2 cut(s)	156, 157
NmuCI	GTSAC	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	388
PceI	AGGCCT	1 cut(s)	232
PfeI	GAWTC	3 cut(s)	76, 283, 385
PkrI	GCNGC	3 cut(s)	107, 349, 364
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	156, 157
PspPI	GGNCC	2 cut(s)	89, 155
PspPPI	RGGWCCY	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	3 cut(s)	106, 348, 363
Sau3AI	GATC	2 cut(s)	49, 271
Sau96I	GGNCC	2 cut(s)	89, 155
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	4 cut(s)	186, 196, 265, 311
SfuI	TTCGAA	1 cut(s)	388
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	367
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	3 cut(s)	42, 105, 133
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	3 cut(s)	203, 327, 353
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	249, 388
TasI	AATT	1 cut(s)	367
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	76, 283, 385
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	347, 362
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	3 cut(s)	203, 327, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.