Rroxscaffold_2G00113770
TCP Family

assists the folding of proteins upon ATP hydrolysis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005200
Physical Location & Seq
Forward (+)
39503235 .. 39508820
5586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113770.1

Sequence Viewer

Length: 282 bp
ATGGTGCCGAAAACTCTTGCTGAAAATGCGGGGCTTAATTCAATGGAGATAATATCTTCCCTATATGCTGAACATGCAGCCGGGAAAACCAAAGTTGGCATTGACTTGGAGGGAGGCCTTTGCAAAGATGTATCAACTTTACAAGTTTGGGACCTTCATGTTACTAAGTTCTTTGCTCTTAAGTATGCTTCAGATGCTGCCTGCACTGTACTACAAGTAGATCAAGGGTTACTCTACTGCCATGGACAGGTGTTGGCAACCTGTGGCCCCGAGTGGTGTTGA

Protein Analysis

93

Amino Acids

9.99

Weight (kDa)

5.1

Isoelectric Point (pI)

30.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cpn60_TCP1 PF00118 2 - 75 5.2e-20 TCP-1/cpn60 chaperonin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 247
AflII CTTAAG 1 cut(s) 179
AgsI TTSAA 1 cut(s) 42
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 115, 265
ApeKI GCWGC 2 cut(s) 77, 197
AspS9I GGNCC 2 cut(s) 151, 266
AsuC2I CCSGG 1 cut(s) 82
AvaI CYCGRG 1 cut(s) 269
AvaII GGWCC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 89, 184
BcnI CCSGG 1 cut(s) 82
BfrI CTTAAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 78, 198
BlsI GCNGC 2 cut(s) 79, 199
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 151
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 2 cut(s) 151, 266
BmiI GGNNCC 3 cut(s) 6, 152, 268
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 184
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 247
BseXI GCAGC 2 cut(s) 89, 184
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 2 cut(s) 117, 267
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 2 cut(s) 117, 267
BsoBI CYCGRG 1 cut(s) 269
Bsp143I GATC 1 cut(s) 220
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 1 cut(s) 29
BspANI GGCC 2 cut(s) 117, 267
BspLI GGNNCC 3 cut(s) 6, 152, 268
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 220
BssT1I CCWWGG 1 cut(s) 241
Bst4CI ACNGT 1 cut(s) 208
BstAFI CTTAAG 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 241
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 26, 74, 194
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 89, 184
BsuRI GGCC 2 cut(s) 117, 267
BtgI CCRYGG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 151, 266
Csp6I GTAC 1 cut(s) 209
CviAII CATG 3 cut(s) 74, 158, 242
CviJI RGCY 4 cut(s) 34, 80, 117, 267
CviKI_1 RGCY 4 cut(s) 34, 80, 117, 267
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 241
Eco147I AGGCCT 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 3 cut(s) 77, 161, 245
FaiI YATR 6 cut(s) 64, 66, 75, 159, 186, 243
FaqI GGGAC 1 cut(s) 164
FatI CATG 3 cut(s) 73, 157, 241
FauI CCCGC 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 78, 198
Fsp4HI GCNGC 2 cut(s) 78, 198
GluI GCNGC 2 cut(s) 78, 198
HaeIII GGCC 2 cut(s) 117, 267
HapII CCGG 1 cut(s) 81
Hin1II CATG 3 cut(s) 77, 161, 245
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 193
HpyAV CCTTC 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 3 cut(s) 77, 123, 204
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 74, 194
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 3 cut(s) 77, 161, 245
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 4 cut(s) 94, 214, 233, 274
Lsp1109I GCAGC 2 cut(s) 89, 184
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 160, 228
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 48
MluCI AATT 1 cut(s) 37
MnlI CCTC 2 cut(s) 103, 107
MseI TTAA 2 cut(s) 36, 180
MspCI CTTAAG 1 cut(s) 179
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 26, 74, 194
NciI CCSGG 1 cut(s) 82
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 220
NlaIII CATG 3 cut(s) 77, 161, 245
NlaIV GGNNCC 3 cut(s) 6, 152, 268
NspI RCATGY 1 cut(s) 77
PceI AGGCCT 1 cut(s) 117
PkrI GCNGC 2 cut(s) 79, 199
PpuMI RGGWCCY 1 cut(s) 151
Psp5II RGGWCCY 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 6, 152, 268
PspPI GGNCC 2 cut(s) 151, 266
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 2 cut(s) 36, 180
SatI GCNGC 2 cut(s) 78, 198
Sau3AI GATC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 151, 266
ScrFI CCNGG 1 cut(s) 82
SetI ASST 3 cut(s) 156, 252, 263
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 37
SseBI AGGCCT 1 cut(s) 117
SsiI CCGC 1 cut(s) 29
StuI AGGCCT 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 208
TasI AATT 1 cut(s) 37
TatI WGTACW 1 cut(s) 208
Tru1I TTAA 2 cut(s) 36, 180
Tru9I TTAA 2 cut(s) 36, 180
TscAI CASTG 1 cut(s) 211
TseI GCWGC 2 cut(s) 77, 197
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 211
Vha464I CTTAAG 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 151
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.