Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

6846626 .. 6848238

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG042900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCTCGGCAAGAAGTTCATCAAAGCTTACATTCCAGGAATCACAGTTGCGAATTTTGGCCAGACCAGGAATGAATGTTTAAAGGGTCCTCTGGCCTTTTATAAGGGCTTCATCCCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACCCTTGAGCAGATTTCCCACCTACGGCATCGGAAGCCATTGGTGAGACACCAGGCTTCTTATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

75

Amino Acids

8.67

Weight (kDa)

10.51

Isoelectric Point (pI)

23.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	102
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	1 cut(s)	142
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	2 cut(s)	52, 118
AfiI	CCNNNNNNNGG	2 cut(s)	122, 183
AjnI	CCWGG	3 cut(s)	34, 65, 210
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	58, 93
ApoI	RAATTY	2 cut(s)	52, 118
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	60
BceAI	ACGGC	2 cut(s)	143, 200
BciT130I	CCWGG	3 cut(s)	36, 67, 212
BclI	TGATCA	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	131, 226
Bme1390I	CCNGG	3 cut(s)	36, 67, 212
Bme18I	GGWCC	1 cut(s)	86
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	3 cut(s)	36, 67, 212
BmsI	GCATC	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 183
BseBI	CCWGG	3 cut(s)	36, 67, 212
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	122, 183
BshFI	GGCC	2 cut(s)	60, 95
BslI	CCNNNNNNNGG	2 cut(s)	122, 183
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	60, 95
Bsp143I	GATC	2 cut(s)	134, 147
BspANI	GGCC	2 cut(s)	60, 95
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	142
BssMI	GATC	2 cut(s)	134, 147
Bst2UI	CCWGG	3 cut(s)	36, 67, 212
Bst4CI	ACNGT	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	137, 150
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	134, 147
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	3 cut(s)	36, 67, 212
BstSCI	CCNGG	3 cut(s)	34, 65, 210
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	2 cut(s)	60, 95
BtsCI	GGATG	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	86
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	7 cut(s)	26, 60, 95, 108, 130, 196, 215
CviKI_1	RGCY	7 cut(s)	26, 60, 95, 108, 130, 196, 215
DpnI	GATC	2 cut(s)	136, 149
DpnII	GATC	2 cut(s)	134, 147
DraI	TTTAAA	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	34, 65, 210
FaeI	CATG	1 cut(s)	154
FaiI	YATR	2 cut(s)	102, 152
FatI	CATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	147
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	2 cut(s)	131, 226
HaeIII	GGCC	2 cut(s)	60, 95
Hin1II	CATG	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	24
HinfI	GANTC	1 cut(s)	39
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	192
HpyCH4III	ACNGT	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	2 cut(s)	134, 147
LpnPI	CCDG	8 cut(s)	21, 48, 52, 74, 77, 79, 197, 224
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	131, 226
MalI	GATC	2 cut(s)	136, 149
MboI	GATC	2 cut(s)	134, 147
MflI	RGATCY	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	2 cut(s)	52, 118
MluNI	TGGCCA	1 cut(s)	60
MnlI	CCTC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	1 cut(s)	80
Msp20I	TGGCCA	1 cut(s)	60
MspR9I	CCNGG	3 cut(s)	36, 67, 212
MvaI	CCWGG	3 cut(s)	36, 67, 212
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	2 cut(s)	134, 147
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	34
PpuMI	RGGWCCY	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	86
Psp6I	CCWGG	3 cut(s)	34, 65, 210
PspGI	CCWGG	3 cut(s)	34, 65, 210
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	80
Sau3AI	GATC	2 cut(s)	134, 147
Sau96I	GGNCC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	36, 67, 212
SetI	ASST	2 cut(s)	28, 183
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	52, 118
SspMI	CTAG	2 cut(s)	131, 226
StyD4I	CCNGG	3 cut(s)	34, 65, 210
TaaI	ACNGT	1 cut(s)	46
TasI	AATT	2 cut(s)	52, 118
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TspDTI	ATGAA	3 cut(s)	7, 87, 100
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	52, 118
XspI	CTAG	2 cut(s)	131, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.