Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

63812037 .. 63815891

Gene Structure 3855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTGGCCGATGGTGGAGAACGCAATCAACTCCTCGGCCTATGAGGTTGAGTCGATGAGGCGCATATCAAGTATGATAAGTGAATGCGGTTGCACTGGAGCCATTTCTATCTATAGCCATGCCCAAAAGCTCCAACAGAAACTTGATGCTTTCATTGATAATTTCATTAGGCGGACTCTCCCGGAGGCCGGAGCAAAGAACTCGCCGGCGGAGATCGTCAAAGTCGTTTTCCCTGACCTCCTCATCCTCGCCGACCTTCCGGTGGCGAAGGGCATTGGTTCAGCCACCGCAGCTTCGCTTGTCAAGACAATCGGTCGCCGGTCCCGTCGTCAGCTCGGTGAACGTGTCCACTTTTGTGTTCGCTGTGATTTCCCGATTGCTATCTATGGAAGACTAGGACCTTTGGCCTTTTATAAGGGCTTCAGCCCAATTTTTGGAAGACTAGGATCTTGGAATGTGATCATGTGTCTAACCTTTGAGCAGCTAGCTGAGGAGAAGAATCCTCCGAAGGAACTGCTTATTGGAAACTCAAAATTTAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

20.08

Weight (kDa)

9.42

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	434
AciI	CCGC	4 cut(s)	87, 172, 209, 288
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	533
AcuI	CTGAAG	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	188, 262, 434
AflIII	ACRYGT	1 cut(s)	343
AhdI	GACNNNNNGTC	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	504, 536
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	130, 293, 334, 484, 488
AluI	AGCT	5 cut(s)	130, 293, 334, 484, 488
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	4 cut(s)	5, 36, 186, 405
ApeKI	GCWGC	2 cut(s)	290, 481
ApoI	RAATTY	1 cut(s)	533
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	321, 398
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	350
AsuNHI	GCTAGC	1 cut(s)	484
AvaII	GGWCC	2 cut(s)	321, 398
BbsI	GAAGAC	2 cut(s)	397, 445
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	2 cut(s)	302, 493
BccI	CCATC	1 cut(s)	4
BcgI	CGANNNNNNTGC	4 cut(s)	183, 217, 496, 530
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	182
BfaI	CTAG	3 cut(s)	395, 443, 485
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	2 cut(s)	291, 482
BlsI	GCNGC	2 cut(s)	292, 483
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	321, 398
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	321, 398
BmiI	GGNNCC	2 cut(s)	100, 323
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	488
BpiI	GAAGAC	2 cut(s)	397, 445
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 262, 434
Bse118I	RCCGGY	2 cut(s)	205, 318
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	243
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	3 cut(s)	188, 262, 434
BseMII	CTCAG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	22, 230, 506
BseXI	GCAGC	2 cut(s)	302, 493
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	4 cut(s)	7, 38, 188, 407
BsiEI	CGRYCG	1 cut(s)	316
BsiSI	CCGG	5 cut(s)	182, 189, 206, 260, 319
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	188, 262, 434
BsmFI	GGGAC	1 cut(s)	307
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	4 cut(s)	7, 38, 188, 407
Bsp143I	GATC	3 cut(s)	213, 446, 459
BspACI	CCGC	4 cut(s)	87, 172, 209, 288
BspANI	GGCC	4 cut(s)	7, 38, 188, 407
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	100, 323
BspOI	GCTAGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	454
BsrFI	RCCGGY	2 cut(s)	205, 318
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	2 cut(s)	205, 318
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	3 cut(s)	213, 446, 459
BstC8I	GCNNGC	2 cut(s)	207, 486
BstDEI	CTNAG	1 cut(s)	489
BstF5I	GGATG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	216, 449, 462
BstMBI	GATC	3 cut(s)	213, 446, 459
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	112
BstV1I	GCAGC	2 cut(s)	302, 493
BstV2I	GAAGAC	2 cut(s)	397, 445
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	4 cut(s)	7, 38, 188, 407
BtsCI	GGATG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	2 cut(s)	207, 486
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	2 cut(s)	205, 318
Cfr13I	GGNCC	2 cut(s)	321, 398
CviAII	CATG	2 cut(s)	119, 463
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	3 cut(s)	215, 448, 461
DpnII	GATC	3 cut(s)	213, 446, 459
DriI	GACNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	5
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EciI	GGCGGA	2 cut(s)	187, 224
Eco47I	GGWCC	2 cut(s)	321, 398
Eco57I	CTGAAG	1 cut(s)	406
EcoO109I	RGGNCCY	1 cut(s)	398
FaeI	CATG	2 cut(s)	122, 466
FaiI	YATR	8 cut(s)	42, 65, 74, 114, 120, 387, 414, 464
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	2 cut(s)	118, 462
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	2 cut(s)	291, 482
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	291, 482
FspBI	CTAG	3 cut(s)	395, 443, 485
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	291, 482
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	7, 38, 188, 407
HapII	CCGG	5 cut(s)	182, 189, 206, 260, 319
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	122, 466
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	50, 175, 499
HpaII	CCGG	5 cut(s)	182, 189, 206, 260, 319
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	341, 349
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	2 cut(s)	304, 373
Hpy8I	GTNNAC	2 cut(s)	341, 349
Hpy99I	CGWCG	1 cut(s)	330
HpyAV	CCTTC	3 cut(s)	262, 266, 502
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	122, 466
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	213, 446, 459
LmnI	GCTCC	3 cut(s)	98, 135, 191
LpnPI	CCDG	7 cut(s)	81, 195, 202, 219, 246, 273, 332
Lsp1109I	GCAGC	2 cut(s)	302, 493
LweI	GCATC	1 cut(s)	136
MaeI	CTAG	3 cut(s)	395, 443, 485
MaeII	ACGT	1 cut(s)	343
MalI	GATC	3 cut(s)	215, 448, 461
MboI	GATC	3 cut(s)	213, 446, 459
MboII	GAAGA	3 cut(s)	402, 450, 508
MflI	RGATCY	1 cut(s)	446
MluCI	AATT	3 cut(s)	160, 429, 533
MlyI	GAGTC	2 cut(s)	59, 169
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	9 cut(s)	37, 43, 51, 178, 248, 251, 257, 484, 513
MreI	CGCCGGCG	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	205
MseI	TTAA	1 cut(s)	537
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	5 cut(s)	182, 189, 206, 260, 319
MspR9I	CCNGG	1 cut(s)	182
Mva1269I	GAATGC	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	290
NaeI	GCCGGC	1 cut(s)	207
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	3 cut(s)	213, 446, 459
NgoMIV	GCCGGC	1 cut(s)	205
NheI	GCTAGC	1 cut(s)	484
NlaIII	CATG	2 cut(s)	122, 466
NlaIV	GGNNCC	2 cut(s)	100, 323
NmeAIII	GCCGAG	1 cut(s)	14
OliI	CACNNNNGTG	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 322
PctI	GAATGC	1 cut(s)	89
PdiI	GCCGGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	292, 483
PleI	GAGTC	2 cut(s)	58, 169
PpsI	GAGTC	2 cut(s)	58, 169
PpuMI	RGGWCCY	1 cut(s)	398
PsiI	TTATAA	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	100, 323
PspPI	GGNCC	2 cut(s)	321, 398
PspPPI	RGGWCCY	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	537
SatI	GCNGC	2 cut(s)	291, 482
Sau3AI	GATC	3 cut(s)	213, 446, 459
Sau96I	GGNCC	2 cut(s)	321, 398
SchI	GAGTC	2 cut(s)	59, 169
ScrFI	CCNGG	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	112
SgrAI	CRCCGGYG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	321, 398
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	160, 429, 533
SsiI	CCGC	4 cut(s)	87, 172, 209, 288
SspMI	CTAG	3 cut(s)	395, 443, 485
StyD4I	CCNGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	160, 429, 533
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	1 cut(s)	537
Tru9I	TTAA	1 cut(s)	537
TscAI	CASTG	1 cut(s)	100
TseI	GCWGC	2 cut(s)	290, 481
TspDTI	ATGAA	2 cut(s)	142, 154
TspRI	CASTG	1 cut(s)	100
Van91I	CCANNNNNTGG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	321, 398
XapI	RAATTY	1 cut(s)	533
XspI	CTAG	3 cut(s)	395, 443, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.