Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

63831445 .. 63838305

Gene Structure 6861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030585

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGACCGAATTCAAAAAGTTCTGTGTTTGATTCCGGAGATGAGAAGAAAATACAAACCTTTAGCTGACAAGTATCATAGAGCAGCTTCTCTAAACACCAAATCCTTCATCCTCGGCAAGAAGTTCGTCAAAGCTTACATTCCAGGAATCACTGTTGCAAATTCCGCCCAGACAAGGAATGAATATAATAGTAACAATGCGCACAGCAAGAATTCAAGACATCCAACCCTTGGAAAACGACCTCCAAATCAAAGTGCAGATATGCAGACTCTGCCCATCTCCCTCAATTCCACTTCATTTATAATTAAGCTGAACCATAACGACAATATACCTGCAGCATCGTGCAGGCTGCAATATCTAGTATCAGACTATTTTCCTGTGGTCTGCAGGAAAATCCAGGACTTGATTCTATCTTGGTGCCAAGCCAACAGGTTCCCTTTGAGAAAAAGAAGCTTTCAGTTTGTGCGTTTGAACTTTGAAGGCGAAGTGGCCTTCAAAGTGCTGCATGAAAAGCAAATTAAGACTACAAAATCGAGCATATGTAGAGGTGCTCTGAAAATCCTCTTGTTCCAGATTAAGACCTTATATGTGGGCAATGACTTTATTGGAGATGTTCCTTTAACGAAGAAAATTCTTGCTGCATTAACTACAGGTGCTCTAGCAGTCAGCGCACCAAGGCGCTATTCTGGCGCACTGAATGCGTATTCCACCATTTTGAGACAGGAGGGAGTTGGGGATCTCTGGACTGGAATTGGACCTAACATTGCACGTAATGCTATCATTAATGCTGCTGAACTAGCCAGTTATGGTCAAGTGAAGAAGGGAGAGGCTCTGAAGCTCTGGATGAAGAAGCTTGAAGACATAGCTCAACATGCCGACAATGTGTTGGATGATTATGGATATGAGCTTCTCTGGCGTAAGAAAATTGAGAAGATCAACACATCTTTGGATGAGTTGAATAAGAAGGCAGGTGGTTCCAGCTCCGGAGGCATGGACAGCGACGACGGCTCTGGTGTTGGAAAAAACATGCTAAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

347

Amino Acids

38.55

Weight (kDa)

9.81

Isoelectric Point (pI)

30.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	227 - 274	1.2e-08	Mitochondrial carrier protein
Rx_N	PF18052	272 - 308	4.8e-06	Rx N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AarI	CACCTGC	1 cut(s)	959
Acc16I	TGCGCA	1 cut(s)	201
Acc36I	ACCTGC	2 cut(s)	340, 959
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccIII	TCCGGA	2 cut(s)	34, 983
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	744
AcsI	RAATTY	4 cut(s)	9, 160, 211, 630
AcuI	CTGAAG	1 cut(s)	854
AfiI	CCNNNNNNNGG	2 cut(s)	174, 230
AgsI	TTSAA	7 cut(s)	14, 216, 472, 479, 496, 857, 958
AjnI	CCWGG	2 cut(s)	142, 396
AjuI	GAANNNNNNNTTGG	2 cut(s)	667, 699
Alw21I	GWGCWC	2 cut(s)	553, 658
Alw26I	GTCTC	1 cut(s)	712
AlwI	GGATC	1 cut(s)	744
AlwNI	CAGNNNCTG	1 cut(s)	271
Aor13HI	TCCGGA	2 cut(s)	34, 983
AoxI	GGCC	2 cut(s)	489, 1035
ApeKI	GCWGC	6 cut(s)	83, 335, 349, 502, 638, 788
ApoI	RAATTY	4 cut(s)	9, 160, 211, 630
AseI	ATTAAT	1 cut(s)	783
AspLEI	GCGC	4 cut(s)	202, 671, 681, 692
AspS9I	GGNCC	2 cut(s)	4, 755
AvaII	GGWCC	2 cut(s)	4, 755
BanI	GGYRCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	864
Bbv12I	GWGCWC	2 cut(s)	553, 658
BbvI	GCAGC	6 cut(s)	95, 336, 347, 489, 625, 775
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	1021
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	2 cut(s)	144, 398
BcoDI	GTCTC	1 cut(s)	712
BfaI	CTAG	3 cut(s)	359, 659, 797
BfmI	CTRYAG	3 cut(s)	333, 385, 648
BfoI	RGCGCY	1 cut(s)	682
BfuAI	ACCTGC	2 cut(s)	340, 959
BisI	GCNGC	6 cut(s)	84, 336, 350, 503, 639, 789
BlsI	GCNGC	6 cut(s)	85, 337, 351, 504, 640, 790
Bme1390I	CCNGG	2 cut(s)	144, 398
Bme18I	GGWCC	2 cut(s)	4, 755
BmgT120I	GGNCC	2 cut(s)	4, 755
BmiI	GGNNCC	3 cut(s)	419, 434, 976
BmrFI	CCNGG	2 cut(s)	144, 398
BmsI	GCATC	1 cut(s)	347
BpiI	GAAGAC	1 cut(s)	864
BsaAI	YACGTR	1 cut(s)	770
BsaJI	CCNNGG	3 cut(s)	112, 229, 674
BsaWI	WCCGGW	2 cut(s)	34, 983
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 230
Bse1I	ACTGG	2 cut(s)	751, 801
Bse3DI	GCAATG	2 cut(s)	601, 762
BseAI	TCCGGA	2 cut(s)	34, 983
BseBI	CCWGG	2 cut(s)	144, 398
BseDI	CCNNGG	3 cut(s)	112, 229, 674
BseGI	GGATG	5 cut(s)	108, 220, 849, 895, 955
BseLI	CCNNNNNNNGG	2 cut(s)	174, 230
BseMI	GCAATG	2 cut(s)	601, 762
BseNI	ACTGG	2 cut(s)	751, 801
BseXI	GCAGC	6 cut(s)	95, 336, 347, 489, 625, 775
BsgI	GTGCAG	2 cut(s)	276, 364
BshFI	GGCC	2 cut(s)	491, 1037
BshNI	GGYRCC	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	553, 658
BsiSI	CCGG	2 cut(s)	35, 984
BslI	CCNNNNNNNGG	2 cut(s)	174, 230
BsmAI	GTCTC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	491, 1037
Bsp1286I	GDGCHC	2 cut(s)	553, 658
Bsp13I	TCCGGA	2 cut(s)	34, 983
Bsp143I	GATC	2 cut(s)	736, 933
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	491, 1037
BspEI	TCCGGA	2 cut(s)	34, 983
BspLI	GGNNCC	3 cut(s)	419, 434, 976
BspMAI	CTGCAG	2 cut(s)	337, 389
BspMI	ACCTGC	2 cut(s)	340, 959
BspPI	GGATC	1 cut(s)	744
BspT107I	GGYRCC	1 cut(s)	417
BsrDI	GCAATG	2 cut(s)	601, 762
BsrI	ACTGG	2 cut(s)	751, 801
BssECI	CCNNGG	3 cut(s)	112, 229, 674
BssMI	GATC	2 cut(s)	736, 933
BssT1I	CCWWGG	2 cut(s)	229, 674
Bst2UI	CCWGG	2 cut(s)	144, 398
Bst4CI	ACNGT	1 cut(s)	154
BstAPI	GCANNNNNTGC	3 cut(s)	271, 698, 773
BstBAI	YACGTR	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	347
BstF5I	GGATG	5 cut(s)	108, 220, 849, 895, 955
BstH2I	RGCGCY	1 cut(s)	682
BstHHI	GCGC	4 cut(s)	202, 671, 681, 692
BstKTI	GATC	2 cut(s)	739, 936
BstMAI	GTCTC	1 cut(s)	712
BstMBI	GATC	2 cut(s)	736, 933
BstNI	CCWGG	2 cut(s)	144, 398
BstNSI	RCATGY	2 cut(s)	875, 1030
BstSCI	CCNGG	2 cut(s)	142, 396
BstSFI	CTRYAG	3 cut(s)	333, 385, 648
BstV1I	GCAGC	6 cut(s)	95, 336, 347, 489, 625, 775
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	2 cut(s)	491, 1037
BtsCI	GGATG	5 cut(s)	108, 220, 849, 895, 955
BtsIMutI	CAGTG	2 cut(s)	150, 692
BveI	ACCTGC	2 cut(s)	340, 959
Cac8I	GCNNGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	4 cut(s)	202, 671, 681, 692
Cfr13I	GGNCC	2 cut(s)	4, 755
CviAII	CATG	4 cut(s)	506, 872, 991, 1027
DpnI	GATC	2 cut(s)	738, 935
DpnII	GATC	2 cut(s)	736, 933
EciI	GGCGGA	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	229, 674
Eco147I	AGGCCT	1 cut(s)	1037
Eco47I	GGWCC	2 cut(s)	4, 755
Eco57I	CTGAAG	1 cut(s)	854
EcoRI	GAATTC	2 cut(s)	9, 211
EcoRII	CCWGG	2 cut(s)	142, 396
EcoT14I	CCWWGG	2 cut(s)	229, 674
ErhI	CCWWGG	2 cut(s)	229, 674
FaeI	CATG	4 cut(s)	509, 875, 994, 1030
FatI	CATG	4 cut(s)	505, 871, 990, 1026
FauNDI	CATATG	1 cut(s)	539
Fnu4HI	GCNGC	6 cut(s)	84, 336, 350, 503, 639, 789
FokI	GGATG	5 cut(s)	95, 207, 856, 902, 962
Fsp4HI	GCNGC	6 cut(s)	84, 336, 350, 503, 639, 789
FspAI	RTGCGCAY	1 cut(s)	201
FspBI	CTAG	3 cut(s)	359, 659, 797
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	4 cut(s)	201, 670, 680, 691
GluI	GCNGC	6 cut(s)	84, 336, 350, 503, 639, 789
HaeII	RGCGCY	1 cut(s)	682
HaeIII	GGCC	2 cut(s)	491, 1037
HapII	CCGG	2 cut(s)	35, 984
HhaI	GCGC	4 cut(s)	202, 671, 681, 692
Hin1II	CATG	4 cut(s)	509, 875, 994, 1030
Hin6I	GCGC	4 cut(s)	200, 669, 679, 690
HinP1I	GCGC	4 cut(s)	200, 669, 679, 690
HindIII	AAGCTT	3 cut(s)	132, 451, 851
HinfI	GANTC	4 cut(s)	31, 147, 268, 406
HpaII	CCGG	2 cut(s)	35, 984
Hpy188I	TCNGA	3 cut(s)	367, 555, 834
Hpy188III	TCNNGA	6 cut(s)	35, 216, 571, 742, 841, 984
Hpy99I	CGWCG	2 cut(s)	1004, 1007
HpyAV	CCTTC	5 cut(s)	115, 473, 502, 814, 958
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	769
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	4 cut(s)	509, 875, 994, 1030
HspAI	GCGC	4 cut(s)	200, 669, 679, 690
Kpn2I	TCCGGA	2 cut(s)	34, 983
Kzo9I	GATC	2 cut(s)	736, 933
LmnI	GCTCC	1 cut(s)	986
Lsp1109I	GCAGC	6 cut(s)	95, 336, 347, 489, 625, 775
LweI	GCATC	1 cut(s)	347
MaeI	CTAG	3 cut(s)	359, 659, 797
MaeII	ACGT	1 cut(s)	769
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	2 cut(s)	738, 935
MboI	GATC	2 cut(s)	736, 933
MboII	GAAGA	6 cut(s)	57, 637, 829, 859, 869, 943
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	2 cut(s)	553, 658
MluCI	AATT	9 cut(s)	9, 160, 211, 286, 303, 516, 630, 750, 924
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	3 cut(s)	248, 867, 997
MnlI	CCTC	8 cut(s)	122, 252, 293, 539, 572, 718, 820, 980
MroI	TCCGGA	2 cut(s)	34, 983
MseI	TTAA	6 cut(s)	306, 519, 576, 620, 644, 783
MspI	CCGG	2 cut(s)	35, 984
MspR9I	CCNGG	2 cut(s)	144, 398
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	144, 398
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	2 cut(s)	736, 933
NlaIII	CATG	4 cut(s)	509, 875, 994, 1030
NlaIV	GGNNCC	3 cut(s)	419, 434, 976
NmeAIII	GCCGAG	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	201
NspI	RCATGY	2 cut(s)	875, 1030
PaqCI	CACCTGC	1 cut(s)	959
PceI	AGGCCT	1 cut(s)	1037
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	3 cut(s)	31, 147, 406
PflMI	CCANNNNNTGG	1 cut(s)	230
PfoI	TCCNGGA	2 cut(s)	142, 396
PkrI	GCNGC	6 cut(s)	85, 337, 351, 504, 640, 790
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
Ppu21I	YACGTR	1 cut(s)	770
PshBI	ATTAAT	1 cut(s)	783
PsiI	TTATAA	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	142, 396
PspGI	CCWGG	2 cut(s)	142, 396
PspN4I	GGNNCC	3 cut(s)	419, 434, 976
PspPI	GGNCC	2 cut(s)	4, 755
PstI	CTGCAG	2 cut(s)	337, 389
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	736
SaqAI	TTAA	6 cut(s)	306, 519, 576, 620, 644, 783
SatI	GCNGC	6 cut(s)	84, 336, 350, 503, 639, 789
Sau3AI	GATC	2 cut(s)	736, 933
Sau96I	GGNCC	2 cut(s)	4, 755
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	144, 398
SduI	GDGCHC	2 cut(s)	553, 658
SfaNI	GCATC	1 cut(s)	347
SfcI	CTRYAG	3 cut(s)	333, 385, 648
SinI	GGWCC	2 cut(s)	4, 755
Sse9I	AATT	9 cut(s)	9, 160, 211, 286, 303, 516, 630, 750, 924
SseBI	AGGCCT	1 cut(s)	1037
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	3 cut(s)	359, 659, 797
StuI	AGGCCT	1 cut(s)	1037
StyD4I	CCNGG	2 cut(s)	142, 396
StyI	CCWWGG	2 cut(s)	229, 674
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	1 cut(s)	533
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	9 cut(s)	9, 160, 211, 286, 303, 516, 630, 750, 924
TfiI	GAWTC	3 cut(s)	31, 147, 406
Tru1I	TTAA	6 cut(s)	306, 519, 576, 620, 644, 783
Tru9I	TTAA	6 cut(s)	306, 519, 576, 620, 644, 783
TscAI	CASTG	2 cut(s)	157, 699
TseI	GCWGC	6 cut(s)	83, 335, 349, 502, 638, 788
TspDTI	ATGAA	5 cut(s)	97, 195, 285, 522, 860
TspRI	CASTG	2 cut(s)	157, 699
Van91I	CCANNNNNTGG	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	4, 755
VspI	ATTAAT	1 cut(s)	783
XapI	RAATTY	4 cut(s)	9, 160, 211, 630
XceI	RCATGY	2 cut(s)	875, 1030
XspI	CTAG	3 cut(s)	359, 659, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.