Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

5243391 .. 5253091

Gene Structure 9701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG026600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTCATAACCCATTGCTGCTGCCCTTCTTCTTCGAACCCGCGAAACCCACCGTCTCACTCTCAAAAAACTTGCCGGCGGAGACCGTCACAGTCGCTTGCCCTGACCACCTTGTCCTCGCCGACCTTCCGGTGGCCAAGGGCATTGGGTCAGCCACCGCAGCATCGCTTGTCAAGACAGTCGGTCGCCGATCCCGTCGTCAGCTCGGTGAACGTGTTCGCTACACTCTTGAAAATTCCCGGGTTTAAGGACATTGTTGTCACTCATCTTTTTGCTAGTCTAGGGCAGGTTGGTTTGCCGTCTGCATTGGTTCACCAGTTGATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.01

Weight (kDa)

11.24

Isoelectric Point (pI)

66.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	112, 257
Acc36I	ACCTGC	1 cut(s)	277
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	41, 79, 158
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	132
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	232
AhdI	GACNNNNNGTC	1 cut(s)	182
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	60, 76
AlwI	GGATC	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	18, 21, 160
ApoI	RAATTY	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	215
AsuC2I	CCSGG	2 cut(s)	240, 241
AsuHPI	GGTGA	2 cut(s)	220, 305
AsuII	TTCGAA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	5, 8, 172
BceAI	ACGGC	1 cut(s)	283
BcnI	CCSGG	2 cut(s)	240, 241
BcoDI	GTCTC	2 cut(s)	60, 76
BfaI	CTAG	2 cut(s)	276, 281
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	19, 22, 161
BlsI	GCNGC	3 cut(s)	20, 23, 162
Bme1390I	CCNGG	2 cut(s)	240, 241
BmeRI	GACNNNNNGTC	1 cut(s)	182
BmeT110I	CYCGRG	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	240, 241
BmsI	GCATC	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	240, 241
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	137, 239
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	132
Bse118I	RCCGGY	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	137, 239
BseLI	CCNNNNNNNGG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	13
BseNI	ACTGG	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	5, 8, 172
Bsh1236I	CGCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	136
BsiEI	CGRYCG	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	76, 130, 240
BslI	CCNNNNNNNGG	1 cut(s)	132
BsmAI	GTCTC	2 cut(s)	60, 76
BsmBI	CGTCTC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	136
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	3 cut(s)	41, 79, 158
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	43
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	1 cut(s)	185
BspT104I	TTCGAA	1 cut(s)	35
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	13
BsrFI	RCCGGY	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	316
BssAI	RCCGGY	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	137, 239
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	137
Bst4CI	ACNGT	4 cut(s)	54, 87, 93, 180
BstBI	TTCGAA	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	77, 99
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	60, 76
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSCI	CCNGG	2 cut(s)	238, 239
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	5, 8, 172
BsuRI	GGCC	1 cut(s)	136
BtgZI	GCGATG	1 cut(s)	149
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	2 cut(s)	77, 99
Cfr10I	RCCGGY	1 cut(s)	75
Cfr9I	CCCGGG	1 cut(s)	239
CviJI	RGCY	3 cut(s)	136, 154, 204
CviKI_1	RGCY	3 cut(s)	136, 154, 204
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
DrdI	GACNNNNNNGTC	2 cut(s)	112, 257
DriI	GACNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	2 cut(s)	112, 257
EaeI	YGGCCR	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	182
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	60
FaiI	YATR	1 cut(s)	8
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	19, 22, 161
Fsp4HI	GCNGC	3 cut(s)	19, 22, 161
FspBI	CTAG	2 cut(s)	276, 281
GluI	GCNGC	3 cut(s)	19, 22, 161
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	3 cut(s)	76, 130, 240
HpaII	CCGG	3 cut(s)	76, 130, 240
HphI	GGTGA	2 cut(s)	220, 305
Hpy166II	GTNNAC	2 cut(s)	211, 313
Hpy188III	TCNNGA	2 cut(s)	174, 229
Hpy8I	GTNNAC	2 cut(s)	211, 313
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	36, 136
HpyCH4III	ACNGT	4 cut(s)	54, 87, 93, 180
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	75
KroNI	GCCGGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	5 cut(s)	89, 116, 143, 253, 272
Lsp1109I	GCAGC	3 cut(s)	5, 8, 172
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	276, 281
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	87, 259
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	21, 24
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	136
MnlI	CCTC	1 cut(s)	127
Mox20I	TGGCCA	1 cut(s)	136
MroNI	GCCGGC	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	3 cut(s)	76, 130, 240
MspR9I	CCNGG	2 cut(s)	240, 241
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	160
NaeI	GCCGGC	1 cut(s)	77
NciI	CCSGG	2 cut(s)	240, 241
NdeII	GATC	1 cut(s)	190
NgoMIV	GCCGGC	1 cut(s)	75
NmuCI	GTSAC	2 cut(s)	87, 259
NspV	TTCGAA	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	20, 23, 162
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	3 cut(s)	19, 22, 161
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	2 cut(s)	240, 241
SetI	ASST	5 cut(s)	113, 128, 206, 216, 291
SfaNI	GCATC	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	35
SmaI	CCCGGG	1 cut(s)	241
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	3 cut(s)	41, 79, 158
SspMI	CTAG	2 cut(s)	276, 281
StyD4I	CCNGG	2 cut(s)	238, 239
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	4 cut(s)	54, 87, 93, 180
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	35
TaqII	GACCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	234
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	2 cut(s)	87, 259
TseI	GCWGC	3 cut(s)	18, 21, 160
Tsp45I	GTSAC	2 cut(s)	87, 259
TspMI	CCCGGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	234
XmaI	CCCGGG	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	276, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.