Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Reverse (-)

43320061 .. 43325777

Gene Structure 5717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG331200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGGGAGAGGGTCTCGTTGATGAGGAGAGGAGGGTTTAGAGTGCGGCGGTGCTCTGCATCAGGATGGTTCTTTGCTCTTAAGTATGCTTCAGATGCTGCCTGCACTGTACTACGAGTAGATCAAGGGTTGCTCTACTGCCATGGACAGGTTAAGTCAAGAATAATGGGAGATTCTTTTCCTTACAAAAGTATGATTGATTGCTTTGTTGAAACTTTGAAGAATCATGGACCTTTGGCCTTTTATAAGGGTTTCATCCCAAATTTTGGACGCCTAGGATCTTGGAATGTGATCATGTTTCTAACCTTTGAGCAGCCTTTTGTGTTTTCTGGTCTGTGCCCTGGTTTTCTAATTTCACATCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006865 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009506 GO:0009507 GO:0009536 GO:0009853 GO:0009987 GO:0015075 GO:0015171 GO:0015318 GO:0015672 GO:0015711 GO:0015849 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022857 GO:0030054 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098805 GO:1902600 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

9.67

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	51 - 105	1.1e-10	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	266
AciI	CCGC	2 cut(s)	46, 49
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	271
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	148, 266
AflII	CTTAAG	1 cut(s)	80
AgsI	TTSAA	2 cut(s)	212, 220
AjnI	CCWGG	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	2 cut(s)	98, 313
ApoI	RAATTY	1 cut(s)	262
AspA2I	CCTAGG	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	85, 325
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	80
BisI	GCNGC	3 cut(s)	47, 99, 314
BlnI	CCTAGG	1 cut(s)	274
BlsI	GCNGC	3 cut(s)	48, 100, 315
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	2 cut(s)	68, 85
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	142, 274, 340
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 266
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	142, 274, 340
BseGI	GGATG	2 cut(s)	71, 255
BseLI	CCNNNNNNNGG	2 cut(s)	148, 266
BseRI	GAGGAG	2 cut(s)	40, 45
BseSI	GKGCMC	1 cut(s)	341
BseXI	GCAGC	2 cut(s)	85, 325
BsgI	GTGCAG	1 cut(s)	88
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	148, 266
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	56, 341
Bsp143I	GATC	3 cut(s)	121, 278, 291
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	2 cut(s)	46, 49
BspANI	GGCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	19
BssECI	CCNNGG	3 cut(s)	142, 274, 340
BssMI	GATC	3 cut(s)	121, 278, 291
BssNI	GRCGYC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	142, 274
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	271
BstAFI	CTTAAG	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	103
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	71, 255
BstKTI	GATC	3 cut(s)	124, 281, 294
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	121, 278, 291
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSLI	GKGCMC	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	85, 325
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	71, 255
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	230
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	3 cut(s)	143, 227, 295
CviJI	RGCY	2 cut(s)	239, 316
CviKI_1	RGCY	2 cut(s)	239, 316
CviQI	GTAC	1 cut(s)	110
DpnI	GATC	3 cut(s)	123, 280, 293
DpnII	GATC	3 cut(s)	121, 278, 291
Eco130I	CCWWGG	2 cut(s)	142, 274
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	2 cut(s)	142, 274
ErhI	CCWWGG	2 cut(s)	142, 274
FaeI	CATG	3 cut(s)	146, 230, 298
FaiI	YATR	6 cut(s)	87, 144, 194, 228, 246, 296
FatI	CATG	3 cut(s)	142, 226, 294
FbaI	TGATCA	1 cut(s)	291
Fnu4HI	GCNGC	3 cut(s)	47, 99, 314
FokI	GGATG	2 cut(s)	78, 242
Fsp4HI	GCNGC	3 cut(s)	47, 99, 314
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	3 cut(s)	47, 99, 314
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	146, 230, 298
HinfI	GANTC	2 cut(s)	173, 223
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	63, 159
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	59, 105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	146, 230, 298
Ksp22I	TGATCA	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	121, 278, 291
LpnPI	CCDG	6 cut(s)	48, 115, 134, 315, 327, 354
Lsp1109I	GCAGC	2 cut(s)	85, 325
LweI	GCATC	2 cut(s)	68, 85
MaeI	CTAG	1 cut(s)	275
MalI	GATC	3 cut(s)	123, 280, 293
MboI	GATC	3 cut(s)	121, 278, 291
MboII	GAAGA	1 cut(s)	232
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	56, 341
MluCI	AATT	2 cut(s)	262, 351
MnlI	CCTC	4 cut(s)	3, 18, 23, 26
MseI	TTAA	2 cut(s)	81, 153
MslI	CAYNNNNRTG	1 cut(s)	64
MspCI	CTTAAG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	3 cut(s)	121, 278, 291
NlaIII	CATG	3 cut(s)	146, 230, 298
PfeI	GAWTC	2 cut(s)	173, 223
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	48, 100, 315
PsiI	TTATAA	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	81, 153
SatI	GCNGC	3 cut(s)	47, 99, 314
Sau3AI	GATC	3 cut(s)	121, 278, 291
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	56, 341
SetI	ASST	3 cut(s)	153, 235, 308
SfaNI	GCATC	2 cut(s)	68, 85
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	2 cut(s)	262, 351
SsiI	CCGC	2 cut(s)	46, 49
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	142, 274
TaaI	ACNGT	1 cut(s)	109
TasI	AATT	2 cut(s)	262, 351
TatI	WGTACW	1 cut(s)	109
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	173, 223
Tru1I	TTAA	2 cut(s)	81, 153
Tru9I	TTAA	2 cut(s)	81, 153
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	2 cut(s)	98, 313
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	262
XmaJI	CCTAGG	1 cut(s)	274
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.