Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006964.1

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1039

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 427 bp

cccattgctgctgcccttcttcttcgaacccgcgatacccaccgtctcactctcaaagtctcaacgaggactctcccggaggccggagcaaaaaaccttgccggcggagatcgtcaaagtcgttttccctgaccacctcatcctcgccgaccttccggtggccaaggtcattgggtcagccaccgcagcttcgcttgtcaagacgatcggtcgccggtcccgtcgtcagctcggtgaacgtgtccacttttgtgttcgctgtgatttccagattgctatctatggaagactaggatctttggcctcttataagggcttcagcccaaattttggaaggctaggatcttggaatgtgatcatgtttctaacctttgagcaggttctctggcctcttataagggcttcagcccaaattttggaaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006464 GO:0006725 GO:0006807 GO:0007162 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030100 GO:0030155 GO:0030334 GO:0030335 GO:0032259 GO:0032446 GO:0032879 GO:0032991 GO:0034641 GO:0034708 GO:0036211 GO:0036396 GO:0040012 GO:0040017 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045293 GO:0045807 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051270 GO:0051272 GO:0060627 GO:0065007 GO:0070647 GO:0071704 GO:0080009 GO:0090304 GO:0140096 GO:1901360 GO:1901564 GO:1902494 GO:1990234 GO:2000145 GO:2000147

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.69

Weight (kDa)

10.42

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	310, 396
Acc36I	ACCTGC	1 cut(s)	368
AccB7I	CCANNNNNTGG	2 cut(s)	330, 416
AccII	CGCG	1 cut(s)	33
AciI	CCGC	3 cut(s)	31, 105, 184
AclWI	GGATC	2 cut(s)	302, 350
AcoI	YGGCCR	1 cut(s)	160
AcsI	RAATTY	2 cut(s)	326, 412
AcuI	CTGAAG	2 cut(s)	302, 388
AfiI	CCNNNNNNNGG	4 cut(s)	83, 158, 330, 416
AflIII	ACRYGT	1 cut(s)	239
AhdI	GACNNNNNGTC	1 cut(s)	208
AleI	CACNNNNGTG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	189, 230
AluI	AGCT	2 cut(s)	189, 230
Alw26I	GTCTC	2 cut(s)	50, 64
AlwI	GGATC	2 cut(s)	302, 350
AoxI	GGCC	4 cut(s)	81, 160, 301, 387
ApeKI	GCWGC	3 cut(s)	8, 11, 186
ApoI	RAATTY	2 cut(s)	326, 412
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	246
AsuII	TTCGAA	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	50, 64
BfaI	CTAG	3 cut(s)	291, 339, 425
BfuAI	ACCTGC	1 cut(s)	368
BisI	GCNGC	3 cut(s)	9, 12, 187
BlsI	GCNGC	3 cut(s)	10, 13, 188
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	217
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	77
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 158, 330, 416
Bse118I	RCCGGY	2 cut(s)	101, 214
Bse8I	GATNNNNATC	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	83, 158, 330, 416
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	33
Bsh1285I	CGRYCG	2 cut(s)	208, 212
BshFI	GGCC	4 cut(s)	83, 162, 303, 389
BsiEI	CGRYCG	2 cut(s)	208, 212
BsiSI	CCGG	5 cut(s)	77, 84, 102, 156, 215
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	4 cut(s)	83, 158, 330, 416
BsmAI	GTCTC	2 cut(s)	50, 64
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	4 cut(s)	83, 162, 303, 389
Bsp119I	TTCGAA	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	109, 205, 294, 342, 355
BspACI	CCGC	3 cut(s)	31, 105, 184
BspANI	GGCC	4 cut(s)	83, 162, 303, 389
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	302, 350
BspT104I	TTCGAA	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	101, 214
BssAI	RCCGGY	2 cut(s)	101, 214
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	5 cut(s)	109, 205, 294, 342, 355
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	44
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	5 cut(s)	112, 208, 297, 345, 358
BstMAI	GTCTC	2 cut(s)	50, 64
BstMBI	GATC	5 cut(s)	109, 205, 294, 342, 355
BstMCI	CGRYCG	2 cut(s)	208, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	294, 342
BstYI	RGATCY	2 cut(s)	294, 342
BsuRI	GGCC	4 cut(s)	83, 162, 303, 389
BtsCI	GGATG	1 cut(s)	139
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	101, 214
Cfr13I	GGNCC	1 cut(s)	217
CviAII	CATG	1 cut(s)	359
DpnI	GATC	5 cut(s)	111, 207, 296, 344, 357
DpnII	GATC	5 cut(s)	109, 205, 294, 342, 355
DriI	GACNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	217
Eco57I	CTGAAG	2 cut(s)	302, 388
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	1 cut(s)	362
FaiI	YATR	4 cut(s)	283, 310, 360, 396
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	1 cut(s)	358
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	9, 12, 187
FokI	GGATG	1 cut(s)	126
Fsp4HI	GCNGC	3 cut(s)	9, 12, 187
FspBI	CTAG	3 cut(s)	291, 339, 425
GluI	GCNGC	3 cut(s)	9, 12, 187
HaeIII	GGCC	4 cut(s)	83, 162, 303, 389
HapII	CCGG	5 cut(s)	77, 84, 102, 156, 215
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	1 cut(s)	70
HpaII	CCGG	5 cut(s)	77, 84, 102, 156, 215
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	2 cut(s)	237, 245
Hpy188III	TCNNGA	2 cut(s)	200, 269
Hpy8I	GTNNAC	2 cut(s)	237, 245
Hpy99I	CGWCG	1 cut(s)	226
HpyAV	CCTTC	4 cut(s)	26, 162, 328, 414
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	362
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	109, 205, 294, 342, 355
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	9 cut(s)	90, 97, 115, 142, 169, 228, 282, 363, 371
Lsp1109I	GCAGC	1 cut(s)	198
MaeI	CTAG	3 cut(s)	291, 339, 425
MaeII	ACGT	1 cut(s)	239
MalI	GATC	5 cut(s)	111, 207, 296, 344, 357
MboI	GATC	5 cut(s)	109, 205, 294, 342, 355
MboII	GAAGA	3 cut(s)	11, 14, 298
MflI	RGATCY	2 cut(s)	294, 342
MlsI	TGGCCA	1 cut(s)	162
MluCI	AATT	2 cut(s)	326, 412
MluNI	TGGCCA	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	60, 73, 147, 153, 314, 400
Mox20I	TGGCCA	1 cut(s)	162
MroNI	GCCGGC	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	162
MspI	CCGG	5 cut(s)	77, 84, 102, 156, 215
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	186
NaeI	GCCGGC	1 cut(s)	103
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	5 cut(s)	109, 205, 294, 342, 355
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	25
OliI	CACNNNNGTG	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	2 cut(s)	118, 218
PdiI	GCCGGC	1 cut(s)	103
PflMI	CCANNNNNTGG	2 cut(s)	330, 416
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	10, 13, 188
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PsiI	TTATAA	2 cut(s)	310, 396
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	217
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
PsuI	RGATCY	2 cut(s)	294, 342
PvuI	CGATCG	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	250
SatI	GCNGC	3 cut(s)	9, 12, 187
Sau3AI	GATC	5 cut(s)	109, 205, 294, 342, 355
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	77
SetI	ASST	9 cut(s)	99, 139, 154, 169, 191, 232, 242, 372, 382
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	2 cut(s)	326, 412
SsiI	CCGC	3 cut(s)	31, 105, 184
SspMI	CTAG	3 cut(s)	291, 339, 425
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	1 cut(s)	25
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	2 cut(s)	326, 412
TseI	GCWGC	3 cut(s)	8, 11, 186
Van91I	CCANNNNNTGG	2 cut(s)	330, 416
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	2 cut(s)	326, 412
XspI	CTAG	3 cut(s)	291, 339, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.