Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005200

Physical Location & Seq

Genomic Coordinates Forward (+)

23333419 .. 23333712

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g27830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGCGCGACGGGCTTGGGACCCACGTGACGGCGAGCTTCGCGGCGGGGTTCGTGGCGGCGGTGGCGTCGAACCCGGTGGACGTGATCAAGACTCGGGTGATGAACATGAAAGTGGAGGCCGGGGCTGAGCCGCCGTACTCGGGGGCGTTGGATTGCGCTCTCAAAACGGTGCGTTCGGAGGGCCCCATGGCGCTTTATAAAGGCTTTGTGCCAACGATTTCGCGGCAGGGGCCTTTTACCGTTGTGCTGTTTGTGACGCTGGAGCAGGTTCGCAAGCTGCTCAAGGATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006817 GO:0006820 GO:0006835 GO:0006839 GO:0006855 GO:0008150 GO:0008272 GO:0008509 GO:0008514 GO:0015075 GO:0015103 GO:0015116 GO:0015117 GO:0015131 GO:0015140 GO:0015141 GO:0015238 GO:0015291 GO:0015297 GO:0015318 GO:0015556 GO:0015672 GO:0015698 GO:0015709 GO:0015711 GO:0015729 GO:0015740 GO:0015743 GO:0015744 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0017077 GO:0019866 GO:0022804 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071422 GO:0071423 GO:0071702 GO:0072348 GO:0098655 GO:0098656 GO:0098660 GO:0098661 GO:0098662 GO:1901682 GO:1902356 GO:1902358 GO:1902600 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

98

Amino Acids

10.39

Weight (kDa)

9.3

Isoelectric Point (pI)

18.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 95	1.4e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005200)

Species	Orthologous Gene IDs
malus_domestica	MD10G1023200.v1.1
pyrus_communis	pycom15g27830
rosa_chinensis	RchiOBHm_Chr1g0317751 RchiOBHm_Chr1g0317841 RchiOBHm_Chr3g0492291
rosa_laevigata	RLG00000030580 RLG00000030581 RLG00000030583 RLG00000030585
rosa_multiflora	Rmu_co8140940.1_g000001 Rmu_sc0000654.1_g000001 Rmu_sc0006964.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113770
rosa_rugosa	Rorug01G0017100 Rorug01G0017600 Rorug01G0018000
rosa_samantha	Rh1BG025500 Rh1CG026600 Rh1DG018400 Rh1DG041800 Rh1DG042000 Rh1DG042200 Rh1DG042900 Rh1DG043700 Rh2AG344000 Rh2BG352500 Rh2CG331200 Rh2DG370500
rosa_wichuraiana	Rw1G001560 Rw1G002150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
Acc36I	ACCTGC	1 cut(s)	256
AccII	CGCG	3 cut(s)	6, 41, 223
AciI	CCGC	6 cut(s)	41, 44, 56, 59, 131, 223
AcvI	CACGTG	1 cut(s)	25
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	28, 140
AjiI	CACGTC	1 cut(s)	82
AluBI	AGCT	2 cut(s)	36, 277
AluI	AGCT	2 cut(s)	36, 277
Ama87I	CYCGRG	2 cut(s)	93, 139
AoxI	GGCC	3 cut(s)	117, 181, 230
ApaI	GGGCCC	1 cut(s)	185
ApeKI	GCWGC	1 cut(s)	277
AspLEI	GCGC	3 cut(s)	6, 158, 193
AspS9I	GGNCC	4 cut(s)	18, 181, 182, 230
AsuC2I	CCSGG	2 cut(s)	74, 121
AsuHPI	GGTGA	1 cut(s)	109
AvaI	CYCGRG	2 cut(s)	93, 139
AvaII	GGWCC	1 cut(s)	18
BaeGI	GKGCMC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	185
BbrPI	CACGTG	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	264
BceAI	ACGGC	2 cut(s)	45, 118
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	2 cut(s)	74, 121
BfoI	RGCGCY	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	42, 57, 131, 224, 278
BlpI	GCTNAGC	1 cut(s)	126
BlsI	GCNGC	5 cut(s)	43, 58, 132, 225, 279
Bme1390I	CCNGG	2 cut(s)	74, 121
Bme18I	GGWCC	1 cut(s)	18
BmeT110I	CYCGRG	2 cut(s)	93, 139
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	4 cut(s)	18, 181, 182, 230
BmiI	GGNNCC	5 cut(s)	19, 20, 183, 184, 231
BmrFI	CCNGG	2 cut(s)	74, 121
BpmI	CTGGAG	1 cut(s)	281
Bpu1102I	GCTNAGC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	74, 121
BsaAI	YACGTR	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	120, 186
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 140
BseDI	CCNNGG	2 cut(s)	120, 186
BseLI	CCNNNNNNNGG	2 cut(s)	28, 140
BseMII	CTCAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	264
Bsh1236I	CGCG	3 cut(s)	6, 41, 223
BshFI	GGCC	3 cut(s)	119, 183, 232
BsiHKCI	CYCGRG	2 cut(s)	93, 139
BsiSI	CCGG	2 cut(s)	74, 120
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	28, 140
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	119, 183, 232
BsoBI	CYCGRG	2 cut(s)	93, 139
Bsp120I	GGGCCC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	84
Bsp1720I	GCTNAGC	1 cut(s)	126
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	6 cut(s)	41, 44, 56, 59, 131, 223
BspANI	GGCC	3 cut(s)	119, 183, 232
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	3 cut(s)	6, 41, 223
BspLI	GGNNCC	5 cut(s)	19, 20, 183, 184, 231
BspMI	ACCTGC	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	120, 186
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	169, 241
BstACI	GRCGYC	1 cut(s)	65
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	34, 275
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	3 cut(s)	6, 41, 223
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	3 cut(s)	6, 158, 193
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 38, 62, 229
BstSCI	CCNGG	2 cut(s)	72, 119
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	3 cut(s)	6, 41, 223
BstV1I	GCAGC	1 cut(s)	264
BsuRI	GGCC	3 cut(s)	119, 183, 232
BtgI	CCRYGG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	82
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	34, 275
CfoI	GCGC	3 cut(s)	6, 158, 193
Cfr13I	GGNCC	4 cut(s)	18, 181, 182, 230
CseI	GACGC	2 cut(s)	54, 265
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	2 cut(s)	106, 187
CviJI	RGCY	9 cut(s)	13, 36, 119, 125, 130, 183, 204, 232, 277
CviKI_1	RGCY	9 cut(s)	13, 36, 119, 125, 130, 183, 204, 232, 277
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	18
Eco72I	CACGTG	1 cut(s)	25
Eco88I	CYCGRG	2 cut(s)	93, 139
EcoO109I	RGGNCCY	4 cut(s)	18, 181, 182, 230
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	109, 190
FaiI	YATR	3 cut(s)	107, 188, 198
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	105, 186
FauI	CCCGC	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	42, 57, 131, 224, 278
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	5 cut(s)	42, 57, 131, 224, 278
GlaI	GCGC	3 cut(s)	5, 157, 192
GluI	GCNGC	5 cut(s)	42, 57, 131, 224, 278
GsuI	CTGGAG	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	3 cut(s)	119, 183, 232
HapII	CCGG	2 cut(s)	74, 120
HgaI	GACGC	2 cut(s)	54, 265
HhaI	GCGC	3 cut(s)	6, 158, 193
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	109, 190
Hin6I	GCGC	3 cut(s)	4, 156, 191
HinP1I	GCGC	3 cut(s)	4, 156, 191
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	74, 120
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	178, 293
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	11, 70
HpyCH4III	ACNGT	2 cut(s)	169, 241
HpyCH4IV	ACGT	2 cut(s)	24, 81
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 38, 62, 229
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	24, 81
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	109, 190
HspAI	GCGC	3 cut(s)	4, 156, 191
KflI	GGGWCCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	87, 133, 212, 245, 251
Lsp1109I	GCAGC	1 cut(s)	264
MaeII	ACGT	2 cut(s)	24, 81
MaeIII	GTNAC	2 cut(s)	25, 253
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	2 cut(s)	109, 172
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	2 cut(s)	74, 120
MspR9I	CCNGG	2 cut(s)	74, 121
MvnI	CGCG	3 cut(s)	6, 41, 223
MwoI	GCNNNNNNNGC	4 cut(s)	10, 38, 62, 229
NciI	CCSGG	2 cut(s)	74, 121
NcoI	CCATGG	1 cut(s)	186
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	2 cut(s)	109, 190
NlaIV	GGNNCC	5 cut(s)	19, 20, 183, 184, 231
NmuCI	GTSAC	2 cut(s)	25, 253
PkrI	GCNGC	5 cut(s)	43, 58, 132, 225, 279
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	25
PmlI	CACGTG	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	198
Psp5II	RGGWCCY	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	25
PspN4I	GGNNCC	5 cut(s)	19, 20, 183, 184, 231
PspOMI	GGGCCC	1 cut(s)	181
PspPI	GGNCC	4 cut(s)	18, 181, 182, 230
PspPPI	RGGWCCY	1 cut(s)	18
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	5 cut(s)	42, 57, 131, 224, 278
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	4 cut(s)	18, 181, 182, 230
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	74, 121
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	5 cut(s)	27, 38, 84, 270, 279
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SsiI	CCGC	6 cut(s)	41, 44, 56, 59, 131, 223
StyD4I	CCNGG	2 cut(s)	72, 119
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	2 cut(s)	169, 241
TaiI	ACGT	2 cut(s)	27, 84
TaqI	TCGA	1 cut(s)	68
TauI	GCSGC	4 cut(s)	44, 59, 133, 226
TseFI	GTSAC	2 cut(s)	25, 253
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	2 cut(s)	25, 253
TspDTI	ATGAA	2 cut(s)	116, 122
VpaK11BI	GGWCC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.